BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644665|ref|NP_206834.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(91 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222750.1| putative [Helicobacter pylori J99] 131 3e-33
ref|NP_223099.1| putative [Helicobacter pylori J99] 26 0.12
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 25 0.28
ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Heli... 23 1.1
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.1
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 21 4.0
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 4.0
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 21 5.2
ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 6.8
ref|NP_223773.1| putative [Helicobacter pylori J99] 20 8.9
>ref|NP_222750.1| putative [Helicobacter pylori J99]
Length = 90
Score = 131 bits (329), Expect = 3e-33
Identities = 63/91 (69%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 1 MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY 60
MKM+ IPTPTM+QVIM++D ITT EF++SALRDFFDK LEEA+ L SIHRDG+GVCGVY
Sbjct: 1 MKMHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVY 60
Query: 61 PYDIARHRAAWVRDKAKALEFPLKLLVEEIK 91
PY+IA ++A VRDKA+A FPL+L+V+E+K
Sbjct: 61 PYEIAIYKAVCVRDKARA-RFPLRLMVQEVK 90
>ref|NP_223099.1| putative [Helicobacter pylori J99]
Length = 370
Score = 26.2 bits (56), Expect = 0.12
Identities = 14/32 (43%), Positives = 18/32 (55%), Gaps = 1/32 (3%)
Query: 49 IHRDGEGVCGVYPYDIARHRAAWVRDKAKALE 80
+H G +CGVY Y AR R + D KAL+
Sbjct: 242 VHLGGINLCGVYDY-FARKRQDFAPDIDKALK 272
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 25.0 bits (53), Expect = 0.28
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 8 TPTMAQVIMVDDPITTTEFVISALRDF 34
TPTM + + TTTE + + L DF
Sbjct: 94 TPTMISISGTNGKTTTTEMLTTLLEDF 120
>ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 618
Score = 23.1 bits (48), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 34 FFDKSLEEAKALTSSIHRDGEG---VCGVYPYDIARHRAAWVRDKAKALEFPLKLLVE 88
FFD ++ E ALTSS EG +Y + R + V D A P+KL ++
Sbjct: 353 FFDVAIAEQHALTSSSAMAKEGFKPFVSIYSTFLQRAYDSIVHD-ACISSLPIKLAID 409
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 47 SSIHRDGEGVCGVYPYDIARHRAAWVRD 74
SSI + +G+ YP + + AW+R+
Sbjct: 372 SSIEKIQQGLARFYPSNWINNYNAWMRE 399
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 49 IHRDGEGVCGVYPYDIARH 67
IH+D V YPY + H
Sbjct: 504 IHKDAPYVPLAYPYSVVPH 522
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 21.2 bits (43), Expect = 4.0
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 63 DIARHRAAWVRDKAKALEFPLKLLVE 88
++AR W+ KA++ P +L++E
Sbjct: 538 EVARFEEFWLLGGQKAIKEPRRLVLE 563
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 35 FDKSLEEAKALTSSIHRDG 53
F+K+ EE+K L + DG
Sbjct: 82 FEKAQEESKVLIENAKNDG 100
>ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 225
Score = 20.4 bits (41), Expect = 6.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 11 MAQVIMVDDPITTTEFV 27
M +V+M++D I EF+
Sbjct: 1 MIEVLMIEDDIELAEFL 17
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 18 DDPITTTEFVISALRDFFDKSLEEAK 43
++P + E + S+L DF +K+ + A+
Sbjct: 84 EEPEESLEDIFSSLNDFQEKTDKNAQ 109
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,043
Number of Sequences: 1491
Number of extensions: 2596
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 91
length of database: 494,079
effective HSP length: 67
effective length of query: 24
effective length of database: 394,182
effective search space: 9460368
effective search space used: 9460368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)