BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644954|ref|NP_207124.1| CMP-N-acetylneuraminic acid
synthetase (neuA) [Helicobacter pylori 26695]
(517 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSF... 35 0.005
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 29 0.33
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 28 0.43
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 28 0.56
ref|NP_223725.1| putative outer membrane protein [Helicobac... 28 0.73
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 27 1.6
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 27 1.6
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 2.1
ref|NP_223056.1| transketolase [Helicobacter pylori J99] 26 2.1
ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobac... 25 4.7
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 25 4.7
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 6.2
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 25 6.2
ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter py... 25 6.2
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 25 6.2
ref|NP_223663.1| putative [Helicobacter pylori J99] 24 8.1
ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Heli... 24 8.1
ref|NP_222746.1| putative [Helicobacter pylori J99] 24 8.1
>ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE [Helicobacter
pylori J99]
Length = 243
Score = 35.0 bits (79), Expect = 0.005
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 6 IVLARSSSKRIKNKNIIDFFNKPMLAYPIEVALNSKLFEKVFISSDSMEYVNLAKNYGAS 65
I+ AR S R +NK + D F PM+ + A N+ L ++ ++ D + + +
Sbjct: 3 IIPARLKSSRFENKMLEDIFGLPMV---VRCAKNANLVDECVVACDDESIMKACQKF--- 56
Query: 66 FLNLRPKILADDRATTLEVMAYHMEELELKDEDIACCLYGASALLQEKHLKNAFETLNKN 125
+++ + + + E + L LK+++ L G L++K + L
Sbjct: 57 --HIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVI---LALLEAT 111
Query: 126 QNTDYVFTCS 135
QN ++ TC+
Sbjct: 112 QNAPFMATCA 121
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 28.9 bits (63), Expect = 0.33
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 325 KILNFTLNALKHYHHLSKDYQYYLGVGF 352
K L+ NA Y+HL +DY YLG +
Sbjct: 241 KFLSAGPNATNLYYHLKRDYSLYLGYNY 268
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 28.5 bits (62), Expect = 0.43
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 314 EHAKGFYPKNTKILNFTLNAL----KHYHHLSKDYQYYLGVGFYPVDARFIYDRPINT 367
++A GF+ KN L +L A K Y + + ++ FY V A F+Y R T
Sbjct: 129 DYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRKETFINAIFYGVGADFLYKRAFGT 186
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 28.1 bits (61), Expect = 0.56
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 323 NTKILNFTLNALKHY-----HHLSKD---YQYYLGVGFYPVDARFIYDRPINT------- 367
NT+ L+F ++ K H S D YQ Y+ P D + I T
Sbjct: 30 NTEFLDFAISFFKDIVYAKMHDKSIDFSWYQQYVMDNKDPKDIAILCGTNIKTIFNTYGT 89
Query: 368 ENKEVLITLGGSEQKTLKEIVKILENKNV 396
KEV++ + + K L EI++ LEN N+
Sbjct: 90 STKEVVLDIAQNNLKYLYEILQNLENDNM 118
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 27.7 bits (60), Expect = 0.73
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 340 LSKDYQYYLGVGFYPVDARFIYDRPINTENKEVLITL-----GGSEQKTLKEIVKILENK 394
+ KD Q L + F D P N++ + L T + Q +++ +I N
Sbjct: 181 IPKDSQIILPASLFN---NFSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNL 237
Query: 395 NVNLHIISPYTPKNPPKNTHYYSPLNPLEFSSLMKSCACA-ISAAGQTLYEL 445
+ P++ N N SP E KSC A +S QT EL
Sbjct: 238 QMTYENTDPFSSGNNDPNGPLASPKPHYECPGYKKSCQVASVSFTPQTAEEL 289
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 26.6 bits (57), Expect = 1.6
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 379 SEQKTLKEIVKILENKNVNLHIISPYTPKNPPKNTHYYSPLNPLEFSSLMKSCAC--AIS 436
+E K K+++K+ +++LH+ TPK+ P + +S+M S C AI
Sbjct: 705 AENKKKKKVLKVYNAYDLHLHVPEGATPKD--------GPSAGIAMASVMASILCDRAIR 756
Query: 437 AAGQTLYELALSQTPSLILPI 457
+ EL LS +LPI
Sbjct: 757 SEVAMTGELTLS---GEVLPI 774
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 26.6 bits (57), Expect = 1.6
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 11/123 (8%)
Query: 40 SKLFEKVFISSDSMEYVNLAKNYGASFLNLRPKILADDRATTLEVMAYHMEELELKDEDI 99
SK+F+K D +E+ L YG + + KI + + + + EL
Sbjct: 567 SKIFQKAIEKHDEVEFTTLQVGYGTTQNPFKAKIFVQLKPLKERKKEHELGQFEL----- 621
Query: 100 ACCLYGASALLQEKHLKNAFETLNKNQNTDYVFTCSPFSASPYRSFSLENGVQMAFKEHS 159
SAL +E + L+ ++ +SP+++F + + K
Sbjct: 622 ------MSALKKELKSMPEAKDLDSINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVE 675
Query: 160 NTR 162
N R
Sbjct: 676 NLR 678
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.2 bits (56), Expect = 2.1
Identities = 11/43 (25%), Positives = 26/43 (59%)
Query: 354 PVDARFIYDRPINTENKEVLITLGGSEQKTLKEIVKILENKNV 396
P+++ IY++ ++EN + L+ + TLKE+++ + N+
Sbjct: 1214 PLNSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNI 1256
>ref|NP_223056.1| transketolase [Helicobacter pylori J99]
Length = 641
Score = 26.2 bits (56), Expect = 2.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 365 INTENKEVLITL--GGSEQKTLKEIVKILENKNVNLHIIS 402
+ +K+ +ITL GSE E KILE +N+ ++S
Sbjct: 525 VKHHSKDPIITLVASGSEVSLALESAKILERENIPTQVVS 564
>ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobacter pylori J99]
Length = 224
Score = 25.0 bits (53), Expect = 4.7
Identities = 15/46 (32%), Positives = 20/46 (42%)
Query: 302 EKAKSLMVIEDTEHAKGFYPKNTKILNFTLNALKHYHHLSKDYQYY 347
++ K+ +I D H KG Y + FTL L LS YY
Sbjct: 105 DQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYY 150
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 25.0 bits (53), Expect = 4.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 121 TLNKNQNTDYVFTCSPFSASPYRSFSLEN-----------GVQMAFKE 157
+LN+ Q + + T F +P+RS L N GVQ+ +K+
Sbjct: 285 SLNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYKQ 332
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 24.6 bits (52), Expect = 6.2
Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 441 TLYELALSQTPSLILPIASNQIIQSKEFESLGIFKQTSLKTLAKDFENLQIQ 492
T +L P ++ ++++ KEFE +GI + + L KD+ N +Q
Sbjct: 537 TFNDLEPGFNPKTLIESVCSKVL--KEFEKVGILDKYGVYQLFKDYYNEVLQ 586
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 24.6 bits (52), Expect = 6.2
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 296 DFYLLKEKAKSLMVIEDTEHAKGFYPKNTKILN--------------FTLNALK--HYHH 339
DF +KE+ L + + KN KIL L+ALK +
Sbjct: 49 DFSEIKEEGYGLDFVGKKIALNQAFKKNHKILKPLNESTSKHILIKGDNLDALKILKQSY 108
Query: 340 LSKDYQYYLGVGFYPVDARFIYDRPINTENKEVLITLGGSEQK 382
K Y+ + + FIY + N+EVL TL S++K
Sbjct: 109 SEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTLDYSKEK 151
>ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
Length = 273
Score = 24.6 bits (52), Expect = 6.2
Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 281 GNDFLITDSYCLNSKDFYLLKEK---------AKSLMVI---EDTEHAKGFYPKNTKILN 328
GNDFLIT S+ KDF L ++ A L+V+ +D ++ FY +
Sbjct: 10 GNDFLITQSF--KKKDFSNLAQQVCHRHEGFGADGLVVVLPSKDYDYEWDFYNSDGSKAG 67
Query: 329 FTLNA-----LKHYHHLSKDYQYYLGVGFYPVDARFIYDRPI--NTENKEVLITLGGSEQ 381
NA L Y H ++ G + R + N N ++L T+
Sbjct: 68 MCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQILDTIPNLRC 127
Query: 382 KTLKEIVKILENKNVNLHIISPYTPK--NPPKNTHYYSPLNPLEFSSL 427
K +LEN + ++I+ P KN + LN LE +L
Sbjct: 128 KKFFTNNSVLENIPM-FYLINTGVPHLVGFVKNKGLLNSLNTLELRAL 174
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 24.6 bits (52), Expect = 6.2
Identities = 27/114 (23%), Positives = 52/114 (44%), Gaps = 12/114 (10%)
Query: 12 SSKRIKNKNIIDFFNKPMLAYPIEVALNSKLFEKVFISSDSMEYVNLAKNYGASFLNLRP 71
+ +I +++ I + K L+ I + L K E+ +S ++ + AS L L P
Sbjct: 446 NENKIHSESEIKNYIKVYLSGTIILELLYK--ERYSLSKQDLQKAKFLNEFMASELLLAP 503
Query: 72 KILADDRATTLEVMAYHMEELELKDEDIACCLYGASALLQEKHLKNA--FETLN 123
T + + E+LE IA C ++ LL+++ L++A ++ LN
Sbjct: 504 --------TKESLSVLYEEQLEFLKPQIAACKRLSALLLEQECLEHANFYDLLN 549
>ref|NP_223663.1| putative [Helicobacter pylori J99]
Length = 145
Score = 24.3 bits (51), Expect = 8.1
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Query: 327 LNFTLNALKHYHHLSKDYQYYLGV--GFY 353
+N T + LK+ HLS DY Y+ + G+Y
Sbjct: 62 INRTQSVLKNELHLSNDYLKYVEIHQGYY 90
>ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Helicobacter pylori J99]
Length = 178
Score = 24.3 bits (51), Expect = 8.1
Identities = 23/101 (22%), Positives = 41/101 (39%), Gaps = 19/101 (18%)
Query: 419 LNPLEFSSLMKSCACAISAAGQTLYELALSQTPS-------------------LILPIAS 459
L PLEF KSC S AG LAL + + +LP+ +
Sbjct: 38 LKPLEFVKDFKSCLDIGSGAGLPAIPLALEKPEAQFILLEPRVKRAAFLNYLKSVLPLNN 97
Query: 460 NQIIQSKEFESLGIFKQTSLKTLAKDFENLQIQKNQAWAKN 500
+II+ + + + + + + A + I+K+Q + K+
Sbjct: 98 IEIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKD 138
>ref|NP_222746.1| putative [Helicobacter pylori J99]
Length = 175
Score = 24.3 bits (51), Expect = 8.1
Identities = 19/72 (26%), Positives = 29/72 (39%), Gaps = 5/72 (6%)
Query: 376 LGGSEQKTLKEIVKILENKNV-----NLHIISPYTPKNPPKNTHYYSPLNPLEFSSLMKS 430
+ G E K + E NK V +++ + Y PK+ T Y + F K
Sbjct: 36 ISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKF 95
Query: 431 CACAISAAGQTL 442
+ ISA Q+L
Sbjct: 96 NSADISALAQSL 107
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,608
Number of Sequences: 1491
Number of extensions: 28412
Number of successful extensions: 114
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 21
length of query: 517
length of database: 494,079
effective HSP length: 82
effective length of query: 435
effective length of database: 371,817
effective search space: 161740395
effective search space used: 161740395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)