BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644955|ref|NP_207125.1| flagellar protein G (flaG)
[Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 342 3e-96
ref|NP_223331.1| putative [Helicobacter pylori J99] 29 0.085
ref|NP_222754.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 26 0.55
ref|NP_224096.1| putative [Helicobacter pylori J99] 25 0.94
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 24 2.1
ref|NP_222755.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacte... 24 2.7
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 23 4.7
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 23 4.7
ref|NP_223994.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C... 23 4.7
ref|NP_223460.1| putative [Helicobacter pylori J99] 23 6.1
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 23 6.1
ref|NP_223252.1| putative [Helicobacter pylori J99] 23 6.1
ref|NP_222924.1| putative [Helicobacter pylori J99] 23 6.1
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 23 6.1
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 7.9
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 22 7.9
ref|NP_223101.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222824.1| putative [Helicobacter pylori J99] 22 7.9
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 342 bits (877), Expect = 3e-96
Identities = 169/180 (93%), Positives = 171/180 (94%)
Query: 1 MKKNYSYKNIQAIDFTNLNDGEKLLVLEFRNHPNTALWMYSTFISLKTHLQFIEDLKNSP 60
MKKNYSYKNIQAIDFT LND EKLLVLEFRNHPNTALWMYS ISLKTHLQFIEDLKNSP
Sbjct: 1 MKKNYSYKNIQAIDFTQLNDEEKLLVLEFRNHPNTALWMYSANISLKTHLQFIEDLKNSP 60
Query: 61 NHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQL 120
+HRYFLFKEE VYLGVGSITKINFFHKHGYLGIYKNPFLKN G TILKALE IAFEEFQL
Sbjct: 61 SHRYFLFKEESVYLGVGSITKINFFHKHGYLGIYKNPFLKNKGGTILKALERIAFEEFQL 120
Query: 121 HSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSLLKL 180
+SLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQS LKL
Sbjct: 121 NSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSPLKL 180
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 28.9 bits (63), Expect = 0.085
Identities = 28/97 (28%), Positives = 36/97 (36%), Gaps = 29/97 (29%)
Query: 85 FHKHGYLGIYKNPFLKNGGETIL----KALEFIAFEEFQLH------SLHLEVMENNFKA 134
FH GYL YKN K L K L + E +LH +H V N ++
Sbjct: 1004 FHHKGYLEKYKNSLAKEAPRIALSEDFKELSMLGKELAELHLNYESGEMHTSVKHNLLES 1063
Query: 135 IAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKG 171
E+EG + DV+ KDKKG
Sbjct: 1064 A--------EMEG-----------YYDVIQMKKDKKG 1081
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 27.7 bits (60), Expect = 0.19
Identities = 31/108 (28%), Positives = 48/108 (43%), Gaps = 26/108 (24%)
Query: 65 FLFKEEGVYLGVGSITKINFFHKHGYLGIY-----KNPFLKNGGETILKALEFIAFEEFQ 119
FL ++E Y +G ++ HK + + KNPFLKN E +A +++
Sbjct: 162 FLNQQEPYYGDIG--VRLEERHKRLVVAQFDPFFPKNPFLKND--------EILAINDYK 211
Query: 120 LHSL-HLEVMENNFK----AIAFYEKNHYELEGRLK------GFISKD 156
+HSL E + +N A ++NH E LK GF+ KD
Sbjct: 212 IHSLAEFEWVVSNLSYQSLAKVKIKRNHQIKEVTLKVNKRYGGFLLKD 259
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 26.2 bits (56), Expect = 0.55
Identities = 18/77 (23%), Positives = 37/77 (47%), Gaps = 6/77 (7%)
Query: 94 YKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFI 153
Y FL+ T++K + + + F +EV++ + + Y K++ ELE +K +
Sbjct: 40 YAKMFLQVVARTLIKNVNILEEQGF------IEVIKGKQRYLYVYLKDYRELECLVKSKM 93
Query: 154 SKDKEFIDVLLYYKDKK 170
+K ++ Y D+K
Sbjct: 94 AKYVMYLRQFFDYLDRK 110
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 25.4 bits (54), Expect = 0.94
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 107 LKALEFIA----FEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKE 158
+KA F+ F+ F+ L L+ + +FKA F Y LEG++ S D E
Sbjct: 14 IKASRFLGYLMPFDNFEKTLLQLK--KEHFKAAHFVTAFRYSLEGKITEGFSDDGE 67
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 24.3 bits (51), Expect = 2.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 100 KNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDK 157
+N E I LE I + L+ L+ + KA + Y K Y L L +SK K
Sbjct: 159 ENQRERIESLLESIHRHKIPLNEQELQAFDLAIKANSSYYKLSYNLLPLLLSLLSKKK 216
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 24.3 bits (51), Expect = 2.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 115 FEEFQLHSLHLEVMENNFKAIAF 137
F EF L++LH +++ N+ A+AF
Sbjct: 24 FAEFFLYTLHAQLVFNSAVALAF 46
>ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacter pylori J99]
Length = 407
Score = 23.9 bits (50), Expect = 2.7
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 17 NLNDGEKLLVLEFRNHPNTALWMYSTFISLKTHLQFIEDL----------KNSPNHRYFL 66
NL+ +KL + P L ++S ++L +L + D+ K+ +H++F+
Sbjct: 167 NLSLIDKLADAKSVQMPYLGLAVFSLLLALVMYLLKLPDVEKEMPKETTQKSLFSHKHFV 226
Query: 67 FKEEGVYLGVGSITKINFF 85
F G++ VG I F
Sbjct: 227 FGALGIFFYVGGEVAIGSF 245
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.9 bits (50), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 153 ISKDKEFIDVLLYYKDKKGYN 173
I+KD EF +L Y D K YN
Sbjct: 207 ITKDGEFDYTILSYSDFKDYN 227
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 23.1 bits (48), Expect = 4.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 8 KNIQAIDFTNLNDGEKLLVLEFRNHPNTALW 38
K + +DF + DG + + F+N TAL+
Sbjct: 304 KPLVVVDFAHTTDGMQQVFESFKNQKITALF 334
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 23.1 bits (48), Expect = 4.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 128 MENNFKAIAFYEKNHYELEGRLKGFISK-DKEF 159
+E +AIA Y+K ELEG L+ F +K KEF
Sbjct: 29 LERLREAIAHYKKQLIELEG-LQAFQNKVSKEF 60
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Query: 112 FIAFEEFQLHSLHLE-VMENNFKAIAFYEKNHYELEGRLKG 151
++ +EF LE ++ +++ Y K ELEGRL+G
Sbjct: 27 YLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEG 67
>ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C [Helicobacter pylori
J99]
Length = 158
Score = 23.1 bits (48), Expect = 4.7
Identities = 14/43 (32%), Positives = 20/43 (45%)
Query: 129 ENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKG 171
EN K + +K E G IS +KE D ++ + KKG
Sbjct: 9 ENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHGVKKG 51
>ref|NP_223460.1| putative [Helicobacter pylori J99]
Length = 206
Score = 22.7 bits (47), Expect = 6.1
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 108 KALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLK 150
+A++++ E H++H +N ++ + + N+ L RLK
Sbjct: 150 EAIDYVIIHELA-HTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 22.7 bits (47), Expect = 6.1
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 53 IEDLK----NSPNHRYFLFKEEGVYLGVGSITKINFFH-----KHGYLGIYKNPFLKNGG 103
I+DLK N+P ++ EGVY SI +F+ + +L + + G
Sbjct: 140 IKDLKQKLFNAPKNKLKFIAIEGVYSMDASIAPYDFYEIIQETPNAFLIVDEAHSFGTIG 199
Query: 104 ETILKALEFIAFEE 117
E +L LE+ +E
Sbjct: 200 ENLLGFLEYHRIKE 213
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 22.7 bits (47), Expect = 6.1
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 8/61 (13%)
Query: 115 FEEFQLHSLHLEVMENNFKAIAFYEKNHYELE-GRLKGFIS----KDKEFIDVLLYYKDK 169
FE+ ++ + ++++ KA F++ N YELE +KG S K+ + + L +KD
Sbjct: 100 FEKLKVKEI---ILDDKNKANIFFDGNKYELEFPGIKGEFSLEDDKNIKLKIINLLFKDV 156
Query: 170 K 170
K
Sbjct: 157 K 157
>ref|NP_222924.1| putative [Helicobacter pylori J99]
Length = 385
Score = 22.7 bits (47), Expect = 6.1
Identities = 28/111 (25%), Positives = 49/111 (43%), Gaps = 10/111 (9%)
Query: 13 IDFTNLNDGEKLLVLEF-RNHPNTALWMYSTFISLKTHLQFIEDLKNSPNHRY-FLFKEE 70
I F + +DG K +VLEF + P+ Y + LK L + N+ F+ K E
Sbjct: 171 IGFNDCDDGSKEVVLEFCKKFPSFIPISYPYEVILKDCPSLWHQLYHYCNYTLSFIPKNE 230
Query: 71 GVYLGVGSITKINFFHKHGYLGIYKNPFL-KNGGETILKALEFIAFEEFQL 120
V KI+ H + +YK+ ++ KN E ++ + +F++
Sbjct: 231 WV-------VKIDCDHIYDAKKLYKSFYIPKNIKEVVMYSRINFVVRDFEV 274
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 22.7 bits (47), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 146 EGRLKGFISKDKEFIDVLLYYKDKKGYNDQSLLKL 180
+GRL + +K IDV + +D+K + ++L K+
Sbjct: 159 DGRLVQVVDIEKMLIDVFPWIEDEKHNDLETLSKI 193
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/37 (24%), Positives = 20/37 (53%)
Query: 135 IAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKG 171
+ +YEK + + + +KD D+ + Y+++KG
Sbjct: 164 LKWYEKGLIVQDNYMVNWCTKDGALSDIEVEYEERKG 200
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/22 (36%), Positives = 11/22 (49%)
Query: 2 KKNYSYKNIQAIDFTNLNDGEK 23
KK Y Y +DF ++N K
Sbjct: 202 KKQYQYYQNMLLDFNDINQSRK 223
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 161 DVLLYYKDKKGYNDQSL 177
D +YY+DKKG+ S+
Sbjct: 248 DCSVYYQDKKGFLSYSM 264
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 22.3 bits (46), Expect = 7.9
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 46 LKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNGGET 105
+KT+LQ +E + + +E L V T N+F + K L +
Sbjct: 22 VKTYLQTLEPISSKR-------LKELANLKVSCATIRNYFQI-----LSKEGMLHQAHSS 69
Query: 106 ILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKN 141
+ F AFE + SL EV++ N K + +N
Sbjct: 70 GARLPTFKAFENYWHKSLRFEVLKVNEKRLKSASEN 105
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.142 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,755
Number of Sequences: 1491
Number of extensions: 12498
Number of successful extensions: 49
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 23
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)