BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644960|ref|NP_207130.1| cell division topological
specificity factor (minE) [Helicobacter pylori 26695]
(77 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223034.1| putative cell division topological specifi... 147 4e-38
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 0.38
ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99] 24 0.50
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 23 1.1
ref|NP_223659.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223234.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223014.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_224004.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 20 7.2
ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobac... 20 7.2
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 20 7.2
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 20 7.2
>ref|NP_223034.1| putative cell division topological specificity factor
[Helicobacter pylori J99]
Length = 77
Score = 147 bits (371), Expect = 4e-38
Identities = 75/77 (97%), Positives = 76/77 (98%)
Query: 1 MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL 60
MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL
Sbjct: 1 MSLFDFFKNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL 60
Query: 61 DSNQSVETIEVEIILPR 77
D NQSVETIEVEIILP+
Sbjct: 61 DGNQSVETIEVEIILPK 77
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 24.6 bits (52), Expect = 0.38
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 8 KNKGSAATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQ 64
KN+ A TD + ILA + +++ KEI A++ + +D KT++ Q
Sbjct: 1196 KNQELADKITDCAEQILALKAKDPKANTQKLEKEIDALVYQLYHLTDEEIKTIEDGQ 1252
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
Length = 459
Score = 24.3 bits (51), Expect = 0.50
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 11/52 (21%)
Query: 31 NLPYM-----------EEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEV 71
NLPY EE + EII +Q+ K+ HF T+ S++ + V
Sbjct: 364 NLPYSYTTPEEKIAVSEEEKFEIIRNLQEALKNPPSHFPTIKEIISIDGVRV 415
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/42 (23%), Positives = 23/42 (53%)
Query: 30 LNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEV 71
+N P++ + K+I VI++ + ++ + NQ +T+ V
Sbjct: 129 INAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSV 170
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Query: 22 LILAKERTLNLPY-MEEMRKEIIAVIQKYTKSSDIHFKT 59
L+LAKER L L +++ +E + Y KSS + +T
Sbjct: 500 LLLAKERLLFLEQDLKQKEEEFERAKEHYVKSSKHYRET 538
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/35 (31%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Query: 42 IIAVIQKYTKSSDIHFKT-LDSNQSVETIEVEIIL 75
I+ V++ + + H +D +ETIE+E+IL
Sbjct: 101 ILQVVRCFEDDNITHVNDKIDPLNDIETIELELIL 135
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 21.2 bits (43), Expect = 4.2
Identities = 7/21 (33%), Positives = 12/21 (56%)
Query: 36 EEMRKEIIAVIQKYTKSSDIH 56
E ++ E + + + KSSD H
Sbjct: 78 ETLKNETLRALSDFAKSSDTH 98
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 20.4 bits (41), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
Query: 3 LFDFFKNKGSAATATDRLK--LILAKERTLN 31
+F F KGS++ +DR+K L+ AK L+
Sbjct: 16 IFYFLDIKGSSSYISDRVKSALMSAKNSLLD 46
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 15 TATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSN 63
TA ++ L + + +P + + ++ + Q +TK+ + D N
Sbjct: 187 TAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDGN 235
>ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 20.4 bits (41), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 30 LNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVET 68
+NL +EE+ KE A + K HF+ + +S T
Sbjct: 1 MNLSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAYT 39
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/16 (43%), Positives = 13/16 (80%)
Query: 36 EEMRKEIIAVIQKYTK 51
E ++KEI+A+++K K
Sbjct: 348 EALQKEIVALLEKLKK 363
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 15 TATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSN 63
TA ++ L + + +P + + ++ + Q +TK+ + D N
Sbjct: 187 TAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTEYTYPDGN 235
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.133 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,215
Number of Sequences: 1491
Number of extensions: 2449
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 77
length of database: 494,079
effective HSP length: 53
effective length of query: 24
effective length of database: 415,056
effective search space: 9961344
effective search space used: 9961344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)