BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644962|ref|NP_207132.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(134 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223036.1| putative [Helicobacter pylori J99] 245 4e-67
ref|NP_222991.1| putative [Helicobacter pylori J99] 29 0.052
ref|NP_223788.1| putative [Helicobacter pylori J99] 26 0.44
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 26 0.44
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 25 0.75
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 24 1.3
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 24 1.3
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 24 1.7
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 23 2.8
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 23 2.8
ref|NP_223710.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_224181.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 22 6.3
ref|NP_223357.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 8.2
ref|NP_222988.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_223036.1| putative [Helicobacter pylori J99]
Length = 134
Score = 245 bits (625), Expect = 4e-67
Identities = 123/132 (93%), Positives = 130/132 (98%)
Query: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES 60
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLR+K+IQVLVVGKP+ES
Sbjct: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPNES 60
Query: 61 YADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSAC 120
YADT+ARIEHFIKLVDFKGEIVFINED SS+EAYENLEHLGKKNKR+A KDGRLDSLSAC
Sbjct: 61 YADTHARIEHFIKLVDFKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGRLDSLSAC 120
Query: 121 RILERYCQKVLK 132
RILERYCQ+VLK
Sbjct: 121 RILERYCQQVLK 132
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 28.9 bits (63), Expect = 0.052
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 25 LEAILRHNRNQASRDLSDLLREKNIQV---LVVGKPHES 60
LE + R NR ++ R+L +++ KN + +VG P ES
Sbjct: 256 LERMNRRNRTKSDRELLEIIASKNFAIGTDFIVGHPGES 294
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.8 bits (55), Expect = 0.44
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 6/69 (8%)
Query: 38 RDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENL 97
+ LS +LRE IQV + K E+ D + H++ +F ++ + IE +E L
Sbjct: 319 KGLSAVLREGVIQVSLAKKSQENKGDKVNLLYHYLTSSEFSMQV------NAIIEGFEQL 372
Query: 98 EHLGKKNKR 106
+ KR
Sbjct: 373 RADLESEKR 381
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 25.8 bits (55), Expect = 0.44
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 40 LSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYEN 96
LS L+ E LV+ +P ++ D A I L F G ++ ++ DR I+AY N
Sbjct: 450 LSKLMLEGG-NFLVLDEP-TNHLDLEAIIALGEALFKFDGALICVSHDRELIDAYAN 504
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 25.0 bits (53), Expect = 0.75
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 72 IKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKD 111
IK V + E+ ++ +S++ + + + G+K K +KD
Sbjct: 383 IKSVLLQNEVALLSPSAASLDQFSSYKERGEKFKAFVLKD 422
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 24.3 bits (51), Expect = 1.3
Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 95 ENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKN 133
EN++ +G+ ++ + + G++D LSA + L+ K+L N
Sbjct: 911 ENVDEVGQIHEEIEDRFGKMDDLSA-QFLQIITLKILAN 948
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 24.3 bits (51), Expect = 1.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 47 KNIQVLVVGKPHESYADTNARIEHFIKLVDFK 78
K++Q L+V PH ++ A++ H K+ FK
Sbjct: 68 KSMQALIVDNPHLAF----AKVSHAFKIPFFK 95
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori
J99]
Length = 329
Score = 23.9 bits (50), Expect = 1.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 50 QVLVVGKPHESYADTNAR---IEHFIKLVDFKGEIV 82
+V+V+ K + +N R + HF L+ FKGE++
Sbjct: 38 KVVVLDKFRSNTLSSNNRPSSLGHFKNLIGFKGEVI 73
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 23.1 bits (48), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 88 RSSIEAYENLEHLGKKNKRLAIKDG 112
++ ++AYE + LG K LA +DG
Sbjct: 124 KNVLKAYEKAKDLGMKTLSLAGRDG 148
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 23.1 bits (48), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Query: 83 FINEDRSS-IEAYENLEHLGKKNKRLAIKDGR-LDSLSACRILERYCQK 129
F ++D+ I E E+L + K + G LD L A +LE+Y QK
Sbjct: 406 FYSKDKGEWISLKEYKENLKENQKSIYYLLGENLDLLKASPLLEKYAQK 454
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 22.7 bits (47), Expect = 3.7
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 6 DVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYA 62
+V LK+I + LNGV+L E I+ +R +L ++ I++ + K ++ Y+
Sbjct: 144 EVLLKKIYNSLALNGVLLVGEKIMSEDR---------ILDKQMIELYYLYKQNQGYS 191
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 21.9 bits (45), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 91 IEAYENLEHLGKKNKRL 107
IE Y+N EHL +N +L
Sbjct: 7 IENYKNFEHLKMENFKL 23
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 21.9 bits (45), Expect = 6.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 77 FKGEIVFINEDRSSIEAYENLEHLG 101
F + +N+D I AY L LG
Sbjct: 291 FGASMALVNKDLKRIVAYSTLSQLG 315
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 21.9 bits (45), Expect = 6.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 67 RIEHFIKLVDFKGEIVFINEDRSSIEAYENLE----HLGKKNKRLAIKDGRLDSLSACRI 122
+ E F K+ E+ F++ S I ++NL+ L K + L+I + I
Sbjct: 60 KCEGFFKIACVSKELRFLDPQNSPIMDFKNLKIKLHSLDKSSLTLSIHSQIQSPILEQSI 119
Query: 123 LERYCQKVLKN 133
++ Q LKN
Sbjct: 120 QQKISQIPLKN 130
>ref|NP_223382.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 328
Score = 21.6 bits (44), Expect = 8.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 7/30 (23%)
Query: 68 IEHFIKLVDF---KGEIVFINEDRSSIEAY 94
+EHF K+V+F +G I+F R ++ AY
Sbjct: 252 LEHFDKMVEFYGDRGVIMF----RKNLHAY 277
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 21.6 bits (44), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 78 KGEIVFINEDRSSIEAYENLEHLGKKNKRL 107
KGEI+ I+ SI AY ++ + +K R+
Sbjct: 152 KGEIMEIDVPFGSIFAYRHIGSIRQKEYRI 181
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,421
Number of Sequences: 1491
Number of extensions: 5941
Number of successful extensions: 28
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 16
length of query: 134
length of database: 494,079
effective HSP length: 69
effective length of query: 65
effective length of database: 391,200
effective search space: 25428000
effective search space used: 25428000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)