BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644963|ref|NP_207133.1| hypothetical protein
[Helicobacter pylori 26695]
(62 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223741.1| putative [Helicobacter pylori J99] 40 1e-05
ref|NP_222918.1| putative [Helicobacter pylori J99] 39 2e-05
ref|NP_223037.1| putative [Helicobacter pylori J99] 37 8e-05
ref|NP_224155.1| putative [Helicobacter pylori J99] 30 0.007
ref|NP_222941.1| putative [Helicobacter pylori J99] 25 0.40
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 23 1.5
ref|NP_222976.1| putative [Helicobacter pylori J99] 22 2.0
ref|NP_223762.1| putative [Helicobacter pylori J99] 21 5.8
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 39.7 bits (91), Expect = 1e-05
Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 7/47 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRG 47
MAE P+E V LG KS K +DF + +KY EKAC+L + G
Sbjct: 24 MAEQDPKELVGLGAKSY-------KEQDFTQAKKYFEKACDLKENSG 63
Score = 28.9 bits (63), Expect = 0.021
Identities = 14/26 (53%), Positives = 17/26 (64%), Gaps = 2/26 (7%)
Query: 24 GKV--EDFIRGRKYIEKACELNDGRG 47
GKV DF + +Y KAC+LNDG G
Sbjct: 146 GKVVTRDFKKAVEYFTKACDLNDGDG 171
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 38.9 bits (89), Expect = 2e-05
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRG 47
MAEP +E V LG++S+ K +DF + + + EKACEL +G G
Sbjct: 24 MAEPDAKELVSLGIESV-------KKQDFAQAKAHFEKACELKEGFG 63
Score = 25.4 bits (54), Expect = 0.24
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 20 GNVSGKVEDFIRGRKYIEKACELNDGRG 47
G + G ++F KACEL DGRG
Sbjct: 176 GYMYGVAKNFKEAIVRYSKACELKDGRG 203
Score = 23.9 bits (50), Expect = 0.69
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 21 NVSGKVEDFIRGRKYIEKACELNDGRG 47
N G +D + +Y K+CELN G
Sbjct: 109 NGQGVSKDAKKASQYYSKSCELNHAEG 135
Score = 21.2 bits (43), Expect = 4.4
Identities = 9/24 (37%), Positives = 12/24 (49%)
Query: 24 GKVEDFIRGRKYIEKACELNDGRG 47
G +D + EKAC+L D G
Sbjct: 148 GTPKDLRKALDLYEKACDLKDSPG 171
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 37.0 bits (84), Expect = 8e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 19 LGNVSGKVEDFIRGRKYIEKACELNDGRG 47
+G S K +DFI+ +KY EKAC LN G G
Sbjct: 1 MGVKSNKAKDFIQAKKYFEKACNLNYGGG 29
Score = 28.9 bits (63), Expect = 0.021
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 24 GKVEDFIRGRKYIEKACELNDGRG 47
G +D I+ +Y KAC+LN+G G
Sbjct: 114 GVEKDLIKAAQYASKACDLNNGSG 137
Score = 26.2 bits (56), Expect = 0.14
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 24 GKVEDFIRGRKYIEKACELNDGRG 47
G ++ I+ +Y KAC+LN+G G
Sbjct: 78 GVEKNLIKAAQYASKACDLNNGVG 101
Score = 24.6 bits (52), Expect = 0.40
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 21 NVSGKVEDFIRGRKYIEKACELND 44
N G +D + +YI KAC+L D
Sbjct: 218 NGQGVEKDLTKADQYISKACKLGD 241
Score = 23.9 bits (50), Expect = 0.69
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 20 GNVSGKVEDFIRGRKYIEKACELNDGRG 47
G+ G ++ + + KAC+LN+G G
Sbjct: 146 GSGKGVEKNLTKAAYFYSKACDLNEGLG 173
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 30.4 bits (67), Expect = 0.007
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRG 47
MAE P+E + G+ N F R +KY EKAC+ ND G
Sbjct: 25 MAEQDPKELIFSGITIYTDKN-------FTRAKKYFEKACKSNDADG 64
Score = 29.6 bits (65), Expect = 0.012
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 24 GKVEDFIRGRKYIEKACELNDGRG 47
G +DF + +Y KACELND +G
Sbjct: 188 GVTKDFKKAFEYSAKACELNDAKG 211
Score = 29.3 bits (64), Expect = 0.016
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 13/46 (28%)
Query: 15 KSMRLGNVSGKV------EDFIRGRK-------YIEKACELNDGRG 47
KS +L NV G + D I+G K Y KACELN+G G
Sbjct: 130 KSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNNGGG 175
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 26 VEDFIRGRKYIEKACELNDGRG 47
V D +Y K+C+LN+ G
Sbjct: 118 VNDLKNALEYYSKSCKLNNVEG 139
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 24.6 bits (52), Expect = 0.40
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 23 SGKVEDFIRGRKYIEKACELNDGRG 47
+G EDF Y++KAC LN+ G
Sbjct: 217 AGLDEDFEVAFDYLQKACALNNSGG 241
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/12 (58%), Positives = 9/12 (74%)
Query: 35 YIEKACELNDGR 46
Y KAC LN+G+
Sbjct: 192 YYLKACRLNEGQ 203
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 22.7 bits (47), Expect = 1.5
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKV 26
+AEPT E+ + +K R G+++GK+
Sbjct: 173 VAEPTCEKVLGDSIKIGRRGSINGKL 198
>ref|NP_222976.1| putative [Helicobacter pylori J99]
Length = 217
Score = 22.3 bits (46), Expect = 2.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 13 GLKSMRLGNVSGKVEDFIRGRKYIEKACEL 42
G K++R + G V+ I G K +++ C++
Sbjct: 90 GFKNIRGSSKKGGVKVLIEGLKRLKEGCDV 119
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 20.8 bits (42), Expect = 5.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 21 NVSGKVEDFIRGRKYIEKACELNDGRGWN 49
N G +D+ + +Y +KA + + RG+N
Sbjct: 74 NGRGVPKDYKKAVEYFQKAVDNDIPRGYN 102
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,217
Number of Sequences: 1491
Number of extensions: 2022
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 62
length of database: 494,079
effective HSP length: 38
effective length of query: 24
effective length of database: 437,421
effective search space: 10498104
effective search space used: 10498104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)