BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644964|ref|NP_207134.1| hypothetical protein
[Helicobacter pylori 26695]
(138 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224155.1| putative [Helicobacter pylori J99] 118 5e-29
ref|NP_223741.1| putative [Helicobacter pylori J99] 116 2e-28
ref|NP_223037.1| putative [Helicobacter pylori J99] 115 4e-28
ref|NP_222918.1| putative [Helicobacter pylori J99] 114 8e-28
ref|NP_222941.1| putative [Helicobacter pylori J99] 96 4e-22
ref|NP_222869.1| putative [Helicobacter pylori J99] 91 2e-20
ref|NP_223289.1| putative [Helicobacter pylori J99] 62 4e-12
ref|NP_223762.1| putative [Helicobacter pylori J99] 52 8e-09
ref|NP_223186.1| putative [Helicobacter pylori J99] 50 3e-08
ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 31 0.014
ref|NP_223714.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 24 1.8
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 24 1.8
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 3.0
ref|NP_223877.1| ALIPHATIC AMIDASE [Helicobacter pylori J99] 23 3.9
ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobac... 23 3.9
ref|NP_223477.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicob... 22 6.7
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 22 6.7
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 22 8.7
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 118 bits (296), Expect = 5e-29
Identities = 61/133 (45%), Positives = 84/133 (62%), Gaps = 8/133 (6%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN+G GC
Sbjct: 120 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNNGGGCSK 178
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y G+ V KD +KA +Y +KAC LND GC L GKGV K+EKQ + EK
Sbjct: 179 LGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEK 238
Query: 123 ACRLGSEDACGIL 135
+C+LG ++AC IL
Sbjct: 239 SCKLGLKEACDIL 251
Score = 68.6 bits (166), Expect = 6e-14
Identities = 49/170 (28%), Positives = 74/170 (42%), Gaps = 47/170 (27%)
Query: 9 KDLKKAIQYYVKACELNEMFGC-------------------------LSLVSNSQINK-- 41
K+ +A +Y+ KAC+ N+ GC L + +++ K
Sbjct: 44 KNFTRAKKYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKALEHTATAKVCKLN 103
Query: 42 ------------------QKLFQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQ 82
+ +Y SK+C+LN+ GC FY + K +KKD +K +
Sbjct: 104 DAEKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLE 162
Query: 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
YYSKAC LN+ GC LG + G+GV K+ K+A + KAC L C
Sbjct: 163 YYSKACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGC 212
Score = 52.4 bits (124), Expect = 5e-09
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 43/149 (28%)
Query: 27 MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK----------- 75
+F +++ ++ + K +Y KAC+ N +GC L + Y +GK + +
Sbjct: 34 IFSGITIYTDKNFTRAK--KYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKAL 91
Query: 76 ----------------------------DLRKAAQYYSKACGLNDQDGCLILG-YKQYAG 106
DL+ A +YYSK+C LN+ +GC++ +
Sbjct: 92 EHTATAKVCKLNDAEKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMI 151
Query: 107 KGVVKNEKQAVKTFEKACRLGSEDACGIL 135
KG +K +K+ ++ + KAC L + C L
Sbjct: 152 KG-LKKDKKDLEYYSKACELNNGGGCSKL 179
Score = 47.0 bits (110), Expect = 2e-07
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 63
G V KD KKA +Y KACELN+ GC +L +
Sbjct: 186 GEGVTKDFKKAFEYSAKACELNDAKGCYALAA---------------------------- 217
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
FY GK V KD ++ + K+C L ++ C IL
Sbjct: 218 --FYNEGKGVAKDEKQTTENLEKSCKLGLKEACDIL 251
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 116 bits (291), Expect = 2e-28
Identities = 61/136 (44%), Positives = 80/136 (57%), Gaps = 8/136 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACELNS 56
G V+K+LKKA +Y KAC+LN GC L+ N N K QY SKAC+L
Sbjct: 74 GHGVEKNLKKAASFYSKACDLNYSNGC-HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
GC LG Y +GK V +D +KA +Y++KAC LND DGC ILG AG+G K+ K+A
Sbjct: 133 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 192
Query: 117 VKTFEKACRLGSEDAC 132
+ +++KAC L C
Sbjct: 193 LASYDKACDLKDSPGC 208
Score = 112 bits (280), Expect = 4e-27
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V +D KKA++Y+ KAC+LN+ GC L S + +K KAC+L
Sbjct: 146 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 205
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC G+ Y +G+ K+ ++A YSKAC L + GC LG QY G+G +NEKQA+
Sbjct: 206 PGCFNAGNMYHHGEGAAKNFKEALARYSKACELENGGGCFNLGAMQYNGEGATRNEKQAI 265
Query: 118 KTFEKACRLGSEDACGIL 135
+ F+K C+LG++ AC IL
Sbjct: 266 ENFKKGCKLGAKGACDIL 283
Score = 105 bits (262), Expect = 5e-25
Identities = 56/136 (41%), Positives = 79/136 (57%), Gaps = 6/136 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCR 61
++D +A +Y+ KAC+L E GC +L + N +K + SKAC+LN NGC
Sbjct: 42 EQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCH 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y +G+ V ++ KA QYYSKAC L +GC LG + GK V ++ K+AV+ F
Sbjct: 102 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 161
Query: 122 KACRLGSEDACGILNN 137
KAC L D C IL +
Sbjct: 162 KACDLNDGDGCTILGS 177
Score = 60.1 bits (144), Expect = 2e-11
Identities = 27/66 (40%), Positives = 37/66 (55%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Y ++D +A +Y+ KAC L + GC LG Y G GV KN K+A + KAC L +
Sbjct: 40 YKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNG 99
Query: 132 CGILNN 137
C +L N
Sbjct: 100 CHLLGN 105
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 115 bits (288), Expect = 4e-28
Identities = 67/135 (49%), Positives = 81/135 (59%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V+K+L KA Q Y KACEL E GC L S + N K QY SKAC+LN+G
Sbjct: 40 GKGVEKNLIKAAQPYTKACELKEGLGCERLWSLYYYGRGVEKNLIKAAQYASKACDLNNG 99
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC+ LG YE G+ V+KDL KAAQY SKAC LN+ GC +LG+ +GKGV KN +A
Sbjct: 100 VGCKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAA 159
Query: 118 KTFEKACRLGSEDAC 132
+ KAC L C
Sbjct: 160 YFYSKACDLNEGLGC 174
Score = 105 bits (263), Expect = 4e-25
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACELNSG 57
G V+K+L KA QY KAC+LN GC +L + K K QY SKAC+LN+G
Sbjct: 76 GRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNG 135
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
+GC LG Y +GK V+K+L KAA +YSKAC LN+ GC LG Y G+GV K+ +
Sbjct: 136 SGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCFNLG-GLYNGQGVEKDLTKVA 194
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC L CG L
Sbjct: 195 YLYSKACELKESFGCGAL 212
Score = 100 bits (248), Expect = 2e-23
Identities = 62/138 (44%), Positives = 78/138 (55%), Gaps = 7/138 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNS----QINKQKLFQYLSKACELNSG 57
G V+KDL KA QY KAC+LN GC L + S + N K + SKAC+LN G
Sbjct: 112 GEGVEKDLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEG 171
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC LG Y NG+ V+KDL K A YSKAC L + GC L G+GV K+ +A
Sbjct: 172 LGCFNLGGLY-NGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKAD 230
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC+LG ++AC L
Sbjct: 231 QYISKACKLGDQEACEAL 248
Score = 88.6 bits (218), Expect = 6e-20
Identities = 55/133 (41%), Positives = 72/133 (53%), Gaps = 6/133 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGNGCRF 62
KD +A +Y+ KAC LN GC +L + N K Q +KACEL G GC
Sbjct: 9 KDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELKEGLGCER 68
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
L Y G+ V+K+L KAAQY SKAC LN+ GC LG+ G+GV K+ +A + K
Sbjct: 69 LWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIKAAQYASK 128
Query: 123 ACRLGSEDACGIL 135
AC L + C +L
Sbjct: 129 ACDLNNGSGCDVL 141
Score = 82.4 bits (202), Expect = 4e-18
Identities = 50/104 (48%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL--VSNSQ-INKQ--KLFQYLSKACELNSGN 58
G V+K+L KA +Y KAC+LNE GC +L + N Q + K K+ SKACEL
Sbjct: 148 GKGVEKNLTKAAYFYSKACDLNEGLGCFNLGGLYNGQGVEKDLTKVAYLYSKACELKESF 207
Query: 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK 102
GC L Y NG+ V+KDL KA QY SKAC L DQ+ C L K
Sbjct: 208 GCGALAVLYINGQGVEKDLTKADQYISKACKLGDQEACEALKEK 251
Score = 80.9 bits (198), Expect = 1e-17
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 40 NKQKLF----QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
NK K F +Y KAC LN G GC LGD Y++GK V+K+L KAAQ Y+KAC L + G
Sbjct: 6 NKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELKEGLG 65
Query: 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC---GILNNY 138
C L Y G+GV KN +A + KAC L + C G L Y
Sbjct: 66 CERLWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEY 111
Score = 48.9 bits (115), Expect = 5e-08
Identities = 28/69 (40%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACEL 54
+ G V+KDL K Y KACEL E FGC +L ++ + K K QY+SKAC+L
Sbjct: 180 LYNGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKL 239
Query: 55 NSGNGCRFL 63
C L
Sbjct: 240 GDQEACEAL 248
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 114 bits (286), Expect = 8e-28
Identities = 57/131 (43%), Positives = 80/131 (60%), Gaps = 6/131 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
K+D +A ++ KACEL E FGC+ L + + K +K Q+ +K CELN G GCR
Sbjct: 42 KQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCR 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y NG+ V KD +KA+QYYSK+C LN +GC +LG + G G K+ ++A+ +E
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 122 KACRLGSEDAC 132
KAC L C
Sbjct: 162 KACDLKDSPGC 172
Score = 111 bits (278), Expect = 6e-27
Identities = 63/136 (46%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
G V KDLKKAIQ+Y K CELN+ +GC L+ N N Q K QY SK+CELN
Sbjct: 74 GKGVGKDLKKAIQFYTKGCELNDGYGC-RLLGNLYYNGQGVSKDAKKASQYYSKSCELNH 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
GC LG + G KDLRKA Y KAC L D GC+ GY GV KN K+A
Sbjct: 133 AEGCTVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYMY----GVAKNFKEA 188
Query: 117 VKTFEKACRLGSEDAC 132
+ + KAC L C
Sbjct: 189 IVRYSKACELKDGRGC 204
Score = 97.1 bits (240), Expect = 2e-22
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 39 INKQKLFQ---YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
+ KQ Q + KACEL G GC FLG FYE GK V KDL+KA Q+Y+K C LND G
Sbjct: 40 VKKQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYG 99
Query: 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
C +LG Y G+GV K+ K+A + + K+C L + C +L +
Sbjct: 100 CRLLGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGS 141
>ref|NP_222941.1| putative [Helicobacter pylori J99]
Length = 355
Score = 95.9 bits (237), Expect = 4e-22
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKL-------FQYLSKACELNSGNG 59
VK+ KA+ YY+KAC LNE C +L S + L F YL KAC LN+ G
Sbjct: 182 VKQSNHKAVIYYLKACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGG 241
Query: 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
C LG Y G+YVKKD +KA Y+ +AC + C +G+ G V K+ ++A+
Sbjct: 242 CASLGSMYMLGRYVKKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDN 301
Query: 120 FEKACRLGSEDAC 132
+E+ C +G E C
Sbjct: 302 YERGCDMGDEVGC 314
Score = 90.1 bits (222), Expect = 2e-20
Identities = 47/136 (34%), Positives = 68/136 (49%), Gaps = 10/136 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNS 56
G + +D + A Y KAC LN GC SL S + + QK F Y +AC++ S
Sbjct: 215 GDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGS 274
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
C +G Y G V KDLRKA Y + C + D+ GC L Y +K+++ A
Sbjct: 275 AVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCFALAGMYYN----MKDKENA 330
Query: 117 VKTFEKACRLGSEDAC 132
+ ++K C+LG + AC
Sbjct: 331 IMIYDKGCKLGMKQAC 346
Score = 73.2 bits (178), Expect = 3e-15
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N K Y KAC GC LG YENG+ + D +KA +YY AC +D++GC L
Sbjct: 42 NYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
G G G +N ++A+ + KAC L ++C
Sbjct: 102 GGLYDEGLGTAQNYQEAIDAYAKACVLKHPESC 134
Score = 69.7 bits (169), Expect = 3e-14
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNS 56
G GT + D KKA++YY AC+ ++ GC L + N Q+ +KAC L
Sbjct: 72 GQGT-RIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTAQNYQEAIDAYAKACVLKH 130
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK-NEKQ 115
C LG Y+ + +K + +A YY K+C + GC ILG G VK + +
Sbjct: 131 PESCYNLGIIYD--RKIKGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHK 188
Query: 116 AVKTFEKACRLGSEDACGILNN 137
AV + KACRL AC L +
Sbjct: 189 AVIYYLKACRLNEGQACRALGS 210
Score = 62.4 bits (150), Expect = 4e-12
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 13 KAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRFLGDF 66
KA Y+ KAC GC L ++I+ +K +Y AC+ + GC LG
Sbjct: 45 KAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y+ G ++ ++A Y+KAC L + C LG + + N QAV ++K+C
Sbjct: 105 YDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGI--IYDRKIKGNAAQAVTYYQKSCNF 162
Query: 127 GSEDACGIL 135
C IL
Sbjct: 163 DMAKGCYIL 171
Score = 41.2 bits (95), Expect = 1e-05
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y++G Y KAA Y+ KAC +GC LG G+G + K+A++ ++ AC+
Sbjct: 38 YKSGNY-----SKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQA 92
Query: 127 GSEDAC 132
+ C
Sbjct: 93 DDREGC 98
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 90.5 bits (223), Expect = 2e-20
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V+KD KAI YY + C L C SL + + N K + AC LN G
Sbjct: 109 GDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYG 168
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C F+G Y++ K V+KDL+KA + + C L D C+ LGY AG V +NE+QA+
Sbjct: 169 ISCNFVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMDVKQNEEQAL 228
Query: 118 KTFEKACRLGSEDAC 132
++K C L C
Sbjct: 229 NLYKKGCSLKEGSGC 243
Score = 77.8 bits (190), Expect = 1e-16
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V +++ KA+ YY + C L C SL S Q + K Y + C L G
Sbjct: 73 GDGVDQNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGG 132
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C LG Y NG VK++ KA + AC LN C +GY + KGV K+ K+A+
Sbjct: 133 VSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYGISCNFVGYMYKSAKGVEKDLKKAL 192
Query: 118 KTFEKACRLGSEDAC 132
F++ C L +C
Sbjct: 193 ANFKRGCHLKDGASC 207
Score = 72.8 bits (177), Expect = 3e-15
Identities = 42/132 (31%), Positives = 61/132 (45%), Gaps = 6/132 (4%)
Query: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFL 63
D +A+ +Y ++C L GC SL S + N K Y + C L + C L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
G YE+G V+KD KA YY + C L C LG+ + G GV +N +A+ + A
Sbjct: 103 GSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYA 162
Query: 124 CRLGSEDACGIL 135
C L +C +
Sbjct: 163 CSLNYGISCNFV 174
Score = 39.7 bits (91), Expect = 3e-05
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
D +A +Y ++C L GC LG G GV +N +AV + + C L + AC L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 136 NN 137
+
Sbjct: 103 GS 104
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 62.4 bits (150), Expect = 4e-12
Identities = 50/146 (34%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQ----YLSKACE 53
G V KD KA+ YY +CE GC L L+SN I+K +L Q YL AC
Sbjct: 185 GSGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACN 242
Query: 54 LNSGNGCRFLGDFYENGKY-VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKN 112
GC LG Y NG + AA+Y+ AC C LG G GV ++
Sbjct: 243 AGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQD 302
Query: 113 EKQAVKTFEKACRLGSEDACGILNNY 138
+++A+ F AC G E +C N+
Sbjct: 303 DQRALDLFSYACDNGFESSCRNYGNF 328
Score = 50.4 bits (119), Expect = 2e-08
Identities = 29/95 (30%), Positives = 45/95 (46%), Gaps = 1/95 (1%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101
Q F+ S++C+ + GC +G Y NG ++ + KAA+YY C D C L
Sbjct: 84 QGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQ 143
Query: 102 KQYAGKGVVKNEKQ-AVKTFEKACRLGSEDACGIL 135
K N+K+ A++ + AC+ G AC L
Sbjct: 144 MYENKKNADSNDKENALQLYAVACQGGDMLACNNL 178
Score = 50.4 bits (119), Expect = 2e-08
Identities = 39/141 (27%), Positives = 54/141 (37%), Gaps = 9/141 (6%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQIN-KQKLFQYLSKACELNS 56
G ++ + KA +YY C + C +L N+ N K+ Q + AC+
Sbjct: 112 GVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGD 171
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK--GVVKNEK 114
C LG + NG V KD KA YY +C + GC LG G+ K +
Sbjct: 172 MLACNNLGWMFANGSGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQL 231
Query: 115 QAVKTFEKACRLGSEDACGIL 135
V AC G C L
Sbjct: 232 SQVDLNYLACNAGDMMGCANL 252
Score = 36.2 bits (82), Expect = 3e-04
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
K D + A + +S++C + GC +G G G+ N +A + +E C G AC
Sbjct: 80 KGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACA 139
Query: 134 IL 135
L
Sbjct: 140 NL 141
Score = 23.1 bits (48), Expect = 3.0
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 14 AIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFLGDFY 67
A +Y+ AC+ + C +L Q + Q+ S AC+ + CR G+F
Sbjct: 270 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFK 329
Query: 68 ENGKYVKKDLRKAAQYYS 85
E+ +V + + Y+
Sbjct: 330 EHLLHVNPNYGRLFMPYN 347
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 51.6 bits (122), Expect = 8e-09
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG YENG+ V KD +KA +Y+ KA + G LG GKGV K+EK+AV+ F
Sbjct: 68 LGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRI 127
Query: 123 ACRLGSEDA 131
A G +A
Sbjct: 128 ATEKGYTNA 136
Score = 50.4 bits (119), Expect = 2e-08
Identities = 36/135 (26%), Positives = 61/135 (44%), Gaps = 6/135 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCRF 62
K+ ++A +Y A + E + L + + +K +Y KA + + G
Sbjct: 44 KEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNN 103
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y+ GK V KD +KA +Y+ A + + LG G+GV N +A + F K
Sbjct: 104 LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRK 163
Query: 123 ACRLGSEDACGILNN 137
A G+ +A +L +
Sbjct: 164 AMHKGNVEAYILLGD 178
Score = 40.8 bits (94), Expect = 1e-05
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V KD KKA++Y+ A E ++L N K + KA +
Sbjct: 111 GKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNV 170
Query: 58 NGCRFLGDFYENGKY---VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEK 114
LGD Y +G ++ D KA YY A ++ L G GV K++K
Sbjct: 171 EAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKK 230
Query: 115 QAVKTFEKACRLGSEDAC 132
+A + +KAC + C
Sbjct: 231 KAEEYMQKACDFDIDKNC 248
Score = 36.2 bits (82), Expect = 3e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 64 GDFYENGK--YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
G++ G+ Y K+ +AA +Y A + ++LG G+GV K+ K+AV+ F+
Sbjct: 31 GNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQ 90
Query: 122 KA 123
KA
Sbjct: 91 KA 92
Score = 26.9 bits (58), Expect = 0.21
Identities = 14/61 (22%), Positives = 29/61 (46%), Gaps = 6/61 (9%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGC 60
++ D KA+ YY A +++ L + + +K+K +Y+ KAC+ + C
Sbjct: 189 IEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYMQKACDFDIDKNC 248
Query: 61 R 61
+
Sbjct: 249 K 249
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 49.7 bits (117), Expect = 3e-08
Identities = 35/101 (34%), Positives = 50/101 (48%), Gaps = 5/101 (4%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS----KACGLNDQDGCL 97
++ F+ A E + G G +L Y GK VK D +KA Q+Y+ K G G L
Sbjct: 74 KQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKA-QFYAQNAIKGYGSGLLGGAL 132
Query: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138
ILG Q G G+ K+ KQA+KT+ R+ S + N +
Sbjct: 133 ILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSANFANKF 173
>ref|NP_222786.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 256
Score = 30.8 bits (68), Expect = 0.014
Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLF--------QYLSKACE 53
V ++ +LKKA+++Y+ A N + C+ V SQ + QK+ Q + K E
Sbjct: 167 VFAASLNMELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLE 226
Query: 54 LNSGNGC 60
L+ + C
Sbjct: 227 LDESHLC 233
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 24.3 bits (51), Expect = 1.3
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 63 LGDFYENGKYVKKDLRKAAQY 83
L DFY GK VK+ ++KA ++
Sbjct: 125 LYDFYIEGKKVKRKIKKAHEH 145
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 23.9 bits (50), Expect = 1.8
Identities = 13/40 (32%), Positives = 18/40 (44%)
Query: 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 70
L +V + + L Y +AC N G C F+G E G
Sbjct: 2 LKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVREEG 41
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 23.9 bits (50), Expect = 1.8
Identities = 18/68 (26%), Positives = 32/68 (46%), Gaps = 6/68 (8%)
Query: 25 NEMFGCLSLVSNSQINKQKLFQYLSKACELNSG------NGCRFLGDFYENGKYVKKDLR 78
N M S+++NS+ K+KL + L + LN+ + + + DF++ K L
Sbjct: 3 NNMRKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALD 62
Query: 79 KAAQYYSK 86
K + Y K
Sbjct: 63 KVLRNYMK 70
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.1 bits (48), Expect = 3.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 89 GLNDQDGCLILGYKQYAGK-GVVKNEKQAVKTFEKACRLG 127
GL+D + LILG K+ A + + ++ ++ KTF+ G
Sbjct: 1392 GLSDSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKG 1431
>ref|NP_223877.1| ALIPHATIC AMIDASE [Helicobacter pylori J99]
Length = 334
Score = 22.7 bits (47), Expect = 3.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 13 KAIQYYVKACELNEMFGCLSLVSNS 37
K + Y KAC+ +++G LS++ +
Sbjct: 83 KETELYAKACKEAKVYGVLSIMERN 107
>ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobacter pylori J99]
Length = 233
Score = 22.7 bits (47), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (49%)
Query: 13 KAIQYYVKACELNEMFGCLSLVSNSQINKQKL 44
+A Y A ELN CL VS+ I K+ L
Sbjct: 181 EAAGLYATAMELNAKALCLCSVSDHLITKEAL 212
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 22.7 bits (47), Expect = 3.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 87 ACGLNDQDGCLILGY 101
ACGL++ D ILGY
Sbjct: 80 ACGLDELDALEILGY 94
>ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 201
Score = 21.9 bits (45), Expect = 6.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124
++ G I+ + A +G+ K +K E AC
Sbjct: 130 EEKGAQIVAFGALANRGICKRAHSHLKAQEGAC 162
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 21.9 bits (45), Expect = 6.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 11 LKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL 54
+++ + +K +NE G ++ + NK++L L+K C L
Sbjct: 827 IEEVLSPKLKFNPINEDIGLYTMCALKLENKEELLLNLAKKCTL 870
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 21.6 bits (44), Expect = 8.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGK 71
S S+I K+KL + C N NG + Y N K
Sbjct: 131 SLSRIQKEKLKELAQDYCNPNHFNGNKLDKRDYHNWK 167
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,455
Number of Sequences: 1491
Number of extensions: 6865
Number of successful extensions: 137
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 59
length of query: 138
length of database: 494,079
effective HSP length: 69
effective length of query: 69
effective length of database: 391,200
effective search space: 26992800
effective search space used: 26992800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)