BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644965|ref|NP_207135.1| hypothetical protein
[Helicobacter pylori 26695]
(101 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223038.1| putative [Helicobacter pylori J99] 169 1e-44
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.050
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 27 0.11
ref|NP_223383.1| putative [Helicobacter pylori J99] 27 0.14
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 0.25
ref|NP_223555.1| Hydrogenase expression/formation protein [... 25 0.32
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.32
ref|NP_223600.1| putative [Helicobacter pylori J99] 25 0.42
ref|NP_223357.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_222847.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_224074.1| putative [Helicobacter pylori J99] 24 0.71
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 24 0.71
ref|NP_223534.1| putative [Helicobacter pylori J99] 24 0.71
ref|NP_222824.1| putative [Helicobacter pylori J99] 24 0.71
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 0.93
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 24 0.93
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 24 0.93
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 1.2
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 1.2
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 1.2
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 1.6
ref|NP_222839.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 2.1
ref|NP_223149.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223088.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_222979.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 23 2.1
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 22 2.7
ref|NP_223331.1| putative [Helicobacter pylori J99] 22 2.7
ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [... 22 2.7
ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTE... 22 3.5
ref|NP_223411.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 22 4.6
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 22 4.6
ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobac... 22 4.6
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 22 4.6
ref|NP_223174.1| putative Outer membrane protein [Helicobac... 22 4.6
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 21 6.1
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 6.1
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 21 6.1
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 21 7.9
ref|NP_223670.1| putative [Helicobacter pylori J99] 21 7.9
ref|NP_223208.1| cag island protein [Helicobacter pylori J99] 21 7.9
ref|NP_223187.1| putative cag island protein [Helicobacter ... 21 7.9
ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter... 21 7.9
ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicoba... 21 7.9
ref|NP_222988.1| putative [Helicobacter pylori J99] 21 7.9
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 169 bits (429), Expect = 1e-44
Identities = 89/112 (79%), Positives = 93/112 (82%), Gaps = 11/112 (9%)
Query: 1 MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL 60
MKIMHQV+DFLD CKQTI KNS+E FQKTKRA FKE+SQKIREQAVKIVEKRL KE M+L
Sbjct: 1 MKIMHQVKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQL 60
Query: 61 SDFNEEELKIMFEAEEKRLLEQIQ-----------TKHFKEVWEKGDNEQGK 101
SDFNEEELKIMFEAEEKRLLEQI TKHFKEVWEKGDNEQ K
Sbjct: 61 SDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.1 bits (61), Expect = 0.050
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 8 RDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVE--KRLKKEGMKLSDFNE 65
+DF DSC + + K + E F++ F ++E K + + +K E K + E + L +
Sbjct: 156 KDFTDSCWKNLYKKNEEEFKEILEGFKRKE--KFKGKILKEFENDKHNQSEIVGLEKL-K 212
Query: 66 EELKIMFEAEEKRL 79
E+++I+F + L
Sbjct: 213 EKIEIVFSKNQTEL 226
Score = 26.9 bits (58), Expect = 0.11
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 17 TIQKNSSEVFQKT---KRAFFKEESQKIREQA-VKIVEKRLKKEGMKLSDFNEEELKIMF 72
T+ K ++E +K K + KE +KI+ +A ++++ ++ +KE +D + L
Sbjct: 111 TLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEKEEKDFTDSCWKNLYKKN 170
Query: 73 EAEEKRLLEQIQTK 86
E E K +LE + K
Sbjct: 171 EEEFKEILEGFKRK 184
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 26.9 bits (58), Expect = 0.11
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 31 RAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQ 84
R F KE S+ I E + L +E + +D N EE++ + E++ +L +IQ
Sbjct: 209 RLFCKEMSEAILEG------RELMQEEIVHADENSEEIEFVSNEEKEEMLAEIQ 256
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 26.6 bits (57), Expect = 0.14
Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 3/46 (6%)
Query: 40 KIREQAVKIVEKRLKKEGMKLSDFNEEELKIMF---EAEEKRLLEQ 82
K A+ +V+K LKK+G LS +EE+K F E +K ++E+
Sbjct: 232 KHSHNALFMVDKILKKKGYVLSFLQKEEIKHHFFSLEIAQKFIIEK 277
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.8 bits (55), Expect = 0.25
Identities = 17/88 (19%), Positives = 40/88 (45%)
Query: 2 KIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLS 61
K++ + + + + + K +E +K E++K+ E+A + V+ +
Sbjct: 1155 KLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 1214
Query: 62 DFNEEELKIMFEAEEKRLLEQIQTKHFK 89
+ ++E + + E ++LLEQ K K
Sbjct: 1215 EKEKQECEKLLTPEARKLLEQEVKKSVK 1242
Score = 25.4 bits (54), Expect = 0.32
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 7 VRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEE 66
VR +LD + K +E +K E++K+ E+A + V+ ++ ++
Sbjct: 980 VRVYLDC----VSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQ 1035
Query: 67 ELKIMFEAEEKRLLEQIQTKHFK 89
E + + E ++LLEQ K K
Sbjct: 1036 ECEKLLTPEARKLLEQEVKKSVK 1058
Score = 25.0 bits (53), Expect = 0.42
Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 2 KIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLS 61
K++ + + + + + K +E +K E++K+ E+A + V+ +
Sbjct: 788 KLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 847
Query: 62 DFNEEELKIMFEAEEKRLLEQIQ--TKHFKEVWEKGDNE 98
+ ++E + + E ++LLE+ + K + + K NE
Sbjct: 848 EKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNE 886
Score = 24.3 bits (51), Expect = 0.71
Identities = 15/80 (18%), Positives = 37/80 (45%)
Query: 2 KIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLS 61
K++ + + + + + K +E +K E++K+ E+A + V+ +
Sbjct: 864 KLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 923
Query: 62 DFNEEELKIMFEAEEKRLLE 81
+ ++E + + E K+LLE
Sbjct: 924 EKEKQECEKLLTPEAKKLLE 943
Score = 23.5 bits (49), Expect = 1.2
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 7 VRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEE 66
V+ +LD Q +E +K E++K E+A K V L ++ +
Sbjct: 614 VKAYLDCVSQA----KTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERK 669
Query: 67 ELKIMFEAEEKRLLE 81
E + + E K+LLE
Sbjct: 670 ECEKLLTPEAKKLLE 684
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 242
Score = 25.4 bits (54), Expect = 0.32
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 36 EESQKIREQAVKIVEKRLKKEGMKLSDFNEEELK 69
+ + + ++ +KIVEK L K +K ++ E LK
Sbjct: 10 QNNPNLSKKDIKIVEKILSKNDIKAAEMKERYLK 43
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 25.4 bits (54), Expect = 0.32
Identities = 21/77 (27%), Positives = 31/77 (39%), Gaps = 1/77 (1%)
Query: 16 QTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKE-GMKLSDFNEEELKIMFEA 74
+ I N EV T FFK + + +K+VE R E G + N+ L+
Sbjct: 324 RAIVSNRLEVVSSTLSHFFKLLNNQAHSSDIKLVEARSNDELGRMQTAINKNILQTQKTM 383
Query: 75 EEKRLLEQIQTKHFKEV 91
+E R Q K +V
Sbjct: 384 QEDRQAVQDTIKVVSDV 400
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 25.0 bits (53), Expect = 0.42
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 1 MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQK 40
+++ H+ +DF KQ + +++ + F KTK FK + K
Sbjct: 68 IRLYHEKKDFDKLLKQILSQDTQKTFLKTK---FKSDLAK 104
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 24.6 bits (52), Expect = 0.55
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 33 FFKEESQKIREQ-AVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEV 91
FF+E + +E ++K + K L + K + +++L+ + +L IQ +HFK V
Sbjct: 176 FFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFL----APKLSVSIQARHFKNV 231
Query: 92 WE 93
E
Sbjct: 232 LE 233
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 24.6 bits (52), Expect = 0.55
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 19 QKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFN 64
+K ++F++ A ++EE +K+ A K + K + M +S N
Sbjct: 163 RKQIGKIFEEKLNAAYEEEPEKLNAIARKHMRKEFESFKMGISGVN 208
>ref|NP_224074.1| putative [Helicobacter pylori J99]
Length = 225
Score = 24.3 bits (51), Expect = 0.71
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 3 IMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGM 58
I H+ L++ KN S+ FQ++ + S + ++A+ +++K ++ + +
Sbjct: 165 IKHENISSLENKTTKTSKNGSQDFQESAIQSLQHVSTQAMQEAISLIKKAVEAQSV 220
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 24.3 bits (51), Expect = 0.71
Identities = 11/36 (30%), Positives = 22/36 (60%)
Query: 35 KEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKI 70
++ES+K +EQ KI ++ +KK + + + LK+
Sbjct: 150 EDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV 185
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 24.3 bits (51), Expect = 0.71
Identities = 23/90 (25%), Positives = 36/90 (39%), Gaps = 4/90 (4%)
Query: 5 HQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKR---LKKEGMKLS 61
HQ + L Q I + ++ KR+ ++ES K KR LK + ++L
Sbjct: 480 HQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQESVKDAYSEFVFALKRLKILKAQMLELQ 539
Query: 62 DFNEEELKIMFEAEEKRLLEQIQTKH-FKE 90
N E + E I TK+ FK+
Sbjct: 540 KINNECYAKLISIENSFQHASITTKNPFKQ 569
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 24.3 bits (51), Expect = 0.71
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 6/68 (8%)
Query: 19 QKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDF------NEEELKIMF 72
Q +SS T +AF + +R + +K+ EKRLK F + E L+ +
Sbjct: 65 QAHSSGARLPTFKAFENYWHKSLRFEVLKVNEKRLKSASENFGLFTLLKKPSLERLERVI 124
Query: 73 EAEEKRLL 80
E E++ L+
Sbjct: 125 ECEKRFLI 132
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 23.9 bits (50), Expect = 0.93
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 48 IVEKRLKKEGMKLSDFNEEE-LKIMFEAEEK---RLLEQIQ 84
+VEK+L +G+K D E+ ++ ++E +EK +LEQ++
Sbjct: 96 VVEKQLLSQGVKKEDLGREKFIQKVWEWKEKSGGAILEQMK 136
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 23.9 bits (50), Expect = 0.93
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 59 KLSDFNEEELKIMFEAEEKRLLEQIQTK 86
K+ DF EE+L EA+ ++LE+I TK
Sbjct: 453 KVVDF-EEQLHPFLEAKYPQVLEEIHTK 479
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 23.9 bits (50), Expect = 0.93
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 38 SQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKH--FKEV 91
S +R+ I + KKE + + E EL + E+K++++QI+T H FK++
Sbjct: 2 SNNMRKLFSMIANSKDKKEKL-IESLQENEL--LNTDEKKKIIDQIKTMHDFFKQM 54
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 1.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 28 KTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNE 65
KT+ + E + A EK K E +K DFNE
Sbjct: 957 KTQEPLYPLELANAEKLAKLETEKAFKAEAVKKLDFNE 994
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 23.5 bits (49), Expect = 1.2
Identities = 11/37 (29%), Positives = 23/37 (61%)
Query: 34 FKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKI 70
+++++ + ++ +KI EKRLK + F ++EL I
Sbjct: 287 YRKKAPFLLDKNIKIAEKRLKPIKQNHTLFGKKELPI 323
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.5 bits (49), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 28 KTKRAFFKEESQKIREQAVKIVEK 51
K KR F + SQK+ + A+ I E+
Sbjct: 354 KKKRVFRNDNSQKVIQSAIAIPEE 377
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.1 bits (48), Expect = 1.6
Identities = 17/57 (29%), Positives = 32/57 (55%), Gaps = 4/57 (7%)
Query: 26 FQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLS--DFNEEELKIMFEAEEKRLL 80
F + ++ + S + +++ K +E+RL E MKL D E+E + + E+K+LL
Sbjct: 164 FTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLL--EQKKLL 218
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 23.1 bits (48), Expect = 1.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 15 KQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSD 62
K+ + KN + + Q+ + KE + I + + K ++EG+ L D
Sbjct: 71 KKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHD 118
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.7 bits (47), Expect = 2.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 28 KTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKR--------- 78
+ + A F +K + A+KI + K+S+ N ++LK F ++
Sbjct: 628 RIEHALFVPCYRKEQTNALKISQSA----SFKMSEKNFKDLKEHFHLMSEKHFILKHEIY 683
Query: 79 -------LLEQIQTKHFKEV 91
L E IQT HFK+V
Sbjct: 684 DPKDYALLKEMIQTAHFKKV 703
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 22.7 bits (47), Expect = 2.1
Identities = 14/61 (22%), Positives = 29/61 (46%)
Query: 8 RDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEE 67
++FL + K + + ++ K+A KE+ K + Q + ++ +KE + N E
Sbjct: 123 QEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLEN 182
Query: 68 L 68
L
Sbjct: 183 L 183
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 22.7 bits (47), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 FFKEESQKIREQAVKIVEKRLKKEGMKLSDFNE 65
F +E + I + +KIV K LK + L DF E
Sbjct: 157 FTRENDRNISLEHLKIVLKLLKPFCVTLLDFEE 189
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 22.7 bits (47), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 37 ESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGD 96
E ++ + + EKR + ++L + NE KI +EK LLE+I K + KG+
Sbjct: 41 EENTPKDAPILLEEKRAQT--LELKEENEVAKKI----DEKSLLEEIHKKKRQLYMLKGE 94
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 22.7 bits (47), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 64 NEEELKIMFEAEEKRLLEQIQTKHF 88
+E LKI + E +R+LE+I K F
Sbjct: 84 SESLLKIFNDEESRRILEKILKKCF 108
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 22.7 bits (47), Expect = 2.1
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 37 ESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAE-EKRLLEQI 83
E Q + + + KR+++ +LSD EE++++ + E EK + ++I
Sbjct: 422 EKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEI 469
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori
J99]
Length = 328
Score = 22.3 bits (46), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 30 KRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFN 64
K+AF K K + +E+RLKKE + +S FN
Sbjct: 57 KQAFEKAFELKKKAIMELELEERLKKEKIDVSLFN 91
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 22.3 bits (46), Expect = 2.7
Identities = 16/70 (22%), Positives = 33/70 (46%), Gaps = 11/70 (15%)
Query: 12 DSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQ------AVKIVEKRLKKEGMKL----- 60
++ + QK+ E+ + FFKE +K E+ +++V+ L+ L
Sbjct: 391 EAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFN 450
Query: 61 SDFNEEELKI 70
+DFN++ + I
Sbjct: 451 TDFNDQSITI 460
Score = 21.2 bits (43), Expect = 6.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 73 EAEEKRLLEQIQTKHFKEVWE 93
E+E K L E ++ +F+ +W+
Sbjct: 178 ESEIKNLDEAVKNTNFQNIWK 198
>ref|NP_222985.1| LIPOPOLYSACCHARIDE HEPTOSYLTRANSFERASE-1 [Helicobacter pylori J99]
Length = 336
Score = 22.3 bits (46), Expect = 2.7
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 16 QTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAE 75
+ I K +S + + KE SQ + +A + K + + N + KI+F E
Sbjct: 134 EPILKRNSTLLSQALNLPEKEISQGLSSRAKAFSYQPSPK--INALNLNGNKPKILFVLE 191
Query: 76 EKRLLEQIQTKHFKEV 91
++ + T+ FKE+
Sbjct: 192 TSKINKTYPTERFKEL 207
>ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 157
Score = 21.9 bits (45), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 71 MFEAEEKRLLEQIQTKHFKEV 91
MF +E+ + Q+ TK FK V
Sbjct: 45 MFSLDERLKMMQLATKSFKNV 65
>ref|NP_223411.1| putative [Helicobacter pylori J99]
Length = 48
Score = 21.9 bits (45), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 7/40 (17%)
Query: 59 KLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNE 98
+L DF EEEL+ E +E + +K V++ D E
Sbjct: 7 ELEDFEEEELEGFEEEDE-------EYNDYKNVYDDDDYE 39
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 21.6 bits (44), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 64 NEEELKIMFEAEEKRLLE 81
N+E +I FE EEK+ +E
Sbjct: 221 NQEGEEIDFELEEKKFIE 238
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 21.6 bits (44), Expect = 4.6
Identities = 14/68 (20%), Positives = 33/68 (47%)
Query: 20 KNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRL 79
K+ + FQ+ + F + + +++ + K L+K+ + + + L IMF + R
Sbjct: 406 KDHLKAFQRLQVQDFDGRIKPLDTISIEYIHKILRKDDFQGLNAMQVLLGIMFFPNDWRS 465
Query: 80 LEQIQTKH 87
++ I T +
Sbjct: 466 IKMIYTSN 473
>ref|NP_223606.1| putative aldehyde dehydrogenase [Helicobacter pylori J99]
Length = 210
Score = 21.6 bits (44), Expect = 4.6
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 46 VKIVEKRLKKEGMKLSDFNEEELK 69
V + K LKK+ S FNEE +K
Sbjct: 55 VMVTNKDLKKQIAAHSYFNEEMIK 78
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 21.6 bits (44), Expect = 4.6
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 31 RAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNE 65
R + +++ K +EQ K+ L E + SDF+E
Sbjct: 305 RYYDNDQAFKAKEQFSKVFSANLLPEILLESDFDE 339
>ref|NP_223174.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 406
Score = 21.6 bits (44), Expect = 4.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 59 KLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEV 91
K D+ + + I+F +E+ LL +QT ++++
Sbjct: 116 KGEDYFLDFIPIVFTRKERTLLLSLQTSPYQDI 148
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 21.2 bits (43), Expect = 6.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 46 VKIVEKRLKKEGMK 59
+KI+ KR+K+ GMK
Sbjct: 25 IKILAKRIKELGMK 38
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 6.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 20 KNSSEVFQKTKRAFFKEESQKIREQAVKIVEKR 52
KN+ +K FK + KIR + I+EK+
Sbjct: 1481 KNNPRETKKPNERAFKNKLDKIRAKYDAILEKQ 1513
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 21.2 bits (43), Expect = 6.1
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 35 KEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEK 94
K E++++ E K++ + ++E + + + EEL + E + E ++ KEV +K
Sbjct: 186 KIEAEELLEHIQKVLNQMSEREQILIQLYYFEELNLSEIKEILGITESRISQIIKEVIKK 245
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 20.8 bits (42), Expect = 7.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 60 LSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWE 93
L + NE ++K + EA+ + E + + +VW+
Sbjct: 396 LGEINENKIKRLQEADAIFIEELKKANLYDKVWQ 429
>ref|NP_223670.1| putative [Helicobacter pylori J99]
Length = 74
Score = 20.8 bits (42), Expect = 7.9
Identities = 9/43 (20%), Positives = 23/43 (52%)
Query: 15 KQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEG 57
K+ ++ + V ++ + K ++++ ++ K V KR+ K G
Sbjct: 28 KRVNKRVNKRVNKRVNKRVNKRVNKRVNKRVNKRVNKRVNKRG 70
>ref|NP_223208.1| cag island protein [Helicobacter pylori J99]
Length = 142
Score = 20.8 bits (42), Expect = 7.9
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 46 VKIVEKRLKKEGMKLSDFNEEELKIMFE 73
++I ++ L+++ L+D+N++ + I F+
Sbjct: 56 IEIPKETLEQKVAILNDYNDKNVNIKFD 83
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 20.8 bits (42), Expect = 7.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 46 VKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTK 86
VK+VEK KK+ + N E K + E +TK
Sbjct: 74 VKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKETK 114
>ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 351
Score = 20.8 bits (42), Expect = 7.9
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 18 IQKNSSEVFQKTKRAFFKE 36
+ K S E+F++ +AFF +
Sbjct: 265 LTKKSREIFKELAKAFFNK 283
>ref|NP_223116.1| FERRIC UPTAKE REGULATION PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 20.8 bits (42), Expect = 7.9
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 43 EQAVKIVEKRLKKEGMKLSDFNEEELKIMFEA 74
E ++ + +KK G+K S EE + +++ +
Sbjct: 8 ESILERLRMSIKKNGLKNSKQREEVVSVLYRS 39
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 20.8 bits (42), Expect = 7.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 60 LSDFNEEELKIMFEAEEKRLLEQIQTKHFKEV 91
L+D + I+ + +E+R++ +I HFK +
Sbjct: 65 LNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRM 96
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.129 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,516
Number of Sequences: 1491
Number of extensions: 4672
Number of successful extensions: 56
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 101
length of database: 494,079
effective HSP length: 65
effective length of query: 36
effective length of database: 397,164
effective search space: 14297904
effective search space used: 14297904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 42 (20.8 bits)