BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644966|ref|NP_207136.1| hypothetical protein
[Helicobacter pylori 26695]
(188 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223039.1| putative [Helicobacter pylori J99] 287 1e-79
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 31 0.024
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 28 0.15
ref|NP_223405.1| putative [Helicobacter pylori J99] 27 0.26
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 27 0.45
ref|NP_223025.1| putative [Helicobacter pylori J99] 26 0.76
ref|NP_223773.1| putative [Helicobacter pylori J99] 25 0.99
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.99
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 25 1.7
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 25 1.7
ref|NP_223610.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 25 1.7
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 25 1.7
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 24 2.2
ref|NP_223472.1| putative osmoprotection binding protein [H... 24 2.9
ref|NP_222831.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 23 3.8
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 3.8
ref|NP_222742.1| putative [Helicobacter pylori J99] 23 3.8
ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter... 23 4.9
ref|NP_223520.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223490.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_224153.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223830.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 6.4
ref|NP_223236.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 22 8.4
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 287 bits (734), Expect = 1e-79
Identities = 147/188 (78%), Positives = 165/188 (87%), Gaps = 2/188 (1%)
Query: 1 MSKENSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVIWVDIW 60
M+K+NSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVI VDIW
Sbjct: 1 MNKKNSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIW 60
Query: 61 VYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKN 120
VYSDVRQFLLDTSSSF+WLL ALLIKWGVIV SARKCY+FSQKMFALIQ+KRQIRENLKN
Sbjct: 61 VYSDVRQFLLDTSSSFIWLLIALLIKWGVIVISARKCYQFSQKMFALIQRKRQIRENLKN 120
Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEEL 180
R N D KN E+LS++ EEIISKKQEE KE ++ ++LS++TEE+I KK EEL
Sbjct: 121 RSNRKDAKNF--EKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEEL 178
Query: 181 KAKNNKGN 188
KA+ +KG+
Sbjct: 179 KARKDKGD 186
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 30.8 bits (68), Expect = 0.024
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 111 KRQIRENLKNRPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTE 170
K ++ +L+N+ P +TK + + + ++ ++ E+Q KET E G+ L T+
Sbjct: 474 KIALKHHLENKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAV--GKALQ--TK 529
Query: 171 EIISKKLEELKAKNNK 186
E +K+++E + K K
Sbjct: 530 ENDTKEVQENETKETK 545
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.1 bits (61), Expect = 0.15
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQ----EE------LQSKETPEGKHDGERLSSVTE 170
+P+P T+ +P+ + EE+I+ Q EE L KE E + +L +
Sbjct: 268 QPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETELAKYKLKDLEN 327
Query: 171 EIISKKLE-ELKAKNNK 186
+ K LE ELK KN K
Sbjct: 328 QKKLKALEAELKKKNTK 344
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 27.3 bits (59), Expect = 0.26
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 80 LSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKNRPNPLDTKNSPKERLSSVT 139
L +L + ++ S +K Y + +L++K+RQ L R N + +ER+S
Sbjct: 191 LKSLQTEQNKLILSMQKDYAIYNQRLSLLEKERQNLNALLKRLNIIKQNRENEERVS--- 247
Query: 140 EEIISKKQEELQSKE 154
+ K + L+ K+
Sbjct: 248 ---LKKSSQALEVKQ 259
Score = 23.1 bits (48), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 108 IQKKRQIRENLKNRPNPLDTKNSPKERLSSVTEEIISKKQEELQ 151
I K Q +E L + + + KN RLSS+ E I SK+ ++++
Sbjct: 23 IAKDIQHKETLLKKTH--EEKNQLNSRLSSLGEAIRSKELQKVE 64
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 26.6 bits (57), Expect = 0.45
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 12/88 (13%)
Query: 110 KKRQIRENLKNRPNPLDT---------KNSPKERLSSVTEEIISKKQEELQSKETPEGKH 160
KK + ++ K +P P K PK + EE KK+E + + E K
Sbjct: 87 KKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEE--PKKEEPKEEPKKEEAKE 144
Query: 161 DGERLSSVTEEIISKKLEELKAKNNKGN 188
+ + SV +++ +K + + K K + N
Sbjct: 145 EAKE-KSVPKQVTTKDIVKEKDKQEESN 171
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.8 bits (55), Expect = 0.76
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 132 KERLSSVTEEIISK-KQEELQSKETPEGKHDGERLSSVT---EEIISKKLE 178
KE + + EE+ K KQE ++ + E D E SV +E +SK+LE
Sbjct: 183 KEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELE 233
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 25.4 bits (54), Expect = 0.99
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 74 SSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKNRPNPLDTKNSPKE 133
S F+ L L+ +G+++ + K ++K+ + KK + +L P + KN E
Sbjct: 10 SGFLAFLLYALLLYGLLL---ERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKN---E 63
Query: 134 RLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNK 186
++ VTE K+ + L+ KE P+ E E+I S L + + K +K
Sbjct: 64 KIEKVTE----KQGDFLEPKEEPK-----EEPEESLEDIFS-SLNDFQEKTDK 106
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 25.4 bits (54), Expect = 0.99
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 87 WGVIVFSARKCYKFSQKMFA--------LIQKKRQIRENLKNRPNPLDTKNSPKERLSSV 138
+ V+ RK + +QK + L+Q E++KN+ ++ N+ E L SV
Sbjct: 582 FAVVADEVRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRSV 641
Query: 139 TEEIISKKQEELQ-SKETPEGKHD 161
TE + + L+ S+E + +D
Sbjct: 642 TEGNLKIASDSLEISQEIDKVSND 665
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 25.0 bits (53), Expect = 1.3
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Query: 128 KNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNN 185
+N P +L+ T E++SK+ ++ Q+ K ERL + +++ K+ E +AK +
Sbjct: 473 QNDPTYKLNDNTYELVSKQLQDYQNTMLLLAK---ERLLFLEQDLKQKEEEFERAKEH 527
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 100 FSQKMFALIQKKRQIRENLKNRPNPLDTKNSPKERLSSVTEEIISK 145
F ++ F L+Q +I +N L+T S + +TEE I +
Sbjct: 453 FKERRFILVQLDEKIEKNKSAYDFCLNTLKSTSPSIFDITEERIKR 498
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/42 (23%), Positives = 24/42 (56%)
Query: 113 QIRENLKNRPNPLDTKNSPKERLSSVTEEIISKKQEELQSKE 154
++++ K++ D +E++ +T+E I K E +++KE
Sbjct: 138 KVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKE 179
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 24.6 bits (52), Expect = 1.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 115 RENLKNRPNPLDTKNSPKERLSSV--TEEIISKKQEELQSKETPE 157
+E L+ L+ +N + + ++ T++II KK+EEL K P+
Sbjct: 130 KEMLELEKLALELENLVENEVKNIKETQQIIFKKKEELVEKTEPK 174
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 24.6 bits (52), Expect = 1.7
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 39 FRFKSIAFSILITLLVIW----VDIWVYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSA 94
FRF + SI T+ I + W D+++F S + +A+++ G +
Sbjct: 173 FRFFNTVMSITPTMDAIGFMDDIQNWTLKDIKKF----HSLYYQPKNAIVLVVGDVN--- 225
Query: 95 RKCYKFSQKMFALIQKKRQIRENLKNRPNPLDTKNSPKE 133
SQK+F L +K + +NL + P PK+
Sbjct: 226 ------SQKVFELTKKHFESLKNLDEKAIPTPYMKEPKQ 258
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 24.6 bits (52), Expect = 1.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 127 TKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNK 186
T+ S KE L V +++ EL+S +P +L+SV +E I K N K
Sbjct: 276 TQESLKEYLEKVLKDL--PYTLELESSSSPFITASHSKLTSVLQENILKTCHTTPLLNTK 333
Query: 187 G 187
G
Sbjct: 334 G 334
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 24.3 bits (51), Expect = 2.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 125 LDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKN 184
L +N+ + T EI SK EEL+ G + L + + +K + K KN
Sbjct: 56 LGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKN 115
Query: 185 NK 186
K
Sbjct: 116 FK 117
>ref|NP_223472.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 161
Score = 23.9 bits (50), Expect = 2.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 21 RWLLAHRHTRGFVIVAWLFR-FKSIAFSILITLL---VIWVDIWVYSDVRQFLLDTSSSF 76
++L+ H R + + + F +A S LI L+ +I V ++ S R FLL +
Sbjct: 40 KYLIKEFHDRFIYFIDLIAQHFIIVALSSLIVLVFGVLIGVFVFYNSKARAFLLPVVNFL 99
Query: 77 VWLLSALLIKWGVIVFSARKCYKFS 101
+ S L + V K Y FS
Sbjct: 100 YTIPSLALFALFIPVIGVYKSYYFS 124
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.9 bits (50), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQS 152
+P L P+ + S +E+I+ Q+EL+S
Sbjct: 279 QPKHLPNSKQPRSQRGSKAQELIAYLQKELES 310
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 23.5 bits (49), Expect = 3.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 78 WLLSALLIKWGVIVFSARKC 97
WL SAL++ + ++V + R C
Sbjct: 178 WLFSALVVLFDIVVVAERFC 197
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 3.8
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 133 ERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKK 176
++L ++T + + +E +KE PE + E EE+ + K
Sbjct: 124 KKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANK 167
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 23.5 bits (49), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 79 LLSALLIKWGVIVFS 93
L+SA L++W IVFS
Sbjct: 68 LISAYLMRWSAIVFS 82
>ref|NP_223839.1| 50S RIBOSOMAL PROTEIN L7/L12 [Helicobacter pylori J99]
Length = 125
Score = 23.1 bits (48), Expect = 4.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 125 LDTKNSPKERLSSVTEEI--ISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKA 182
L + K ++ V EI + K+ + +++TP +G ++ E I KKLEE+ A
Sbjct: 63 LADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEG--VNKEEAETIKKKLEEVGA 120
Query: 183 K 183
K
Sbjct: 121 K 121
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 23.1 bits (48), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 139 TEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNK 186
T E++ K + EL+ + K L + +EI KKLE+ ++NK
Sbjct: 15 TREVLKKIRLELKQVQEILRKKKSV-LKGLKQEICQKKLEKENFRSNK 61
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 23.1 bits (48), Expect = 4.9
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 83 LLIKWGVIVFSARKCYKFSQKMFALIQKKRQIREN-LKNRPNPLDT 127
L+ K GV++ SQ+ F +QKK Q +EN RP+ +D+
Sbjct: 3 LVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDS 48
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 22.7 bits (47), Expect = 6.4
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 116 ENLKNRPNPLDTK-NSPKERLSSVTEEIISKKQEELQSKE 154
+ L+++ N + + N+ KERL E++ K +L++KE
Sbjct: 179 KELEHKKNQIIKRLNAQKERLKEKLEKLEDPKTLQLEAKE 218
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 22.7 bits (47), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQS 152
+P L P + S +E+I+ Q+EL+S
Sbjct: 246 QPKHLPNSKQPHSQRGSKAQELIAYLQKELES 277
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 22.7 bits (47), Expect = 6.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 123 NPLDTKNSPKERLSSVTEEII 143
+P++ NSP + +SSV E +
Sbjct: 556 SPIEAINSPNKEISSVATEFL 576
>ref|NP_223236.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.7 bits (47), Expect = 6.4
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 51 TLLVIWVDIWVYSDVRQFLLDTSSSFVWLLSALLIKW 87
T++ I + + YS ++ +++ S+ VW +++ W
Sbjct: 113 TIIPISIGLTRYSALKFAIINLISAMVWASITIILAW 149
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 22.3 bits (46), Expect = 8.4
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 59 IWVYSDVRQFLLDTSSSFVWLLSALLIKWGVI---VFSARKCYKFSQKMFALIQ-----K 110
IW + R F V L + W I + S CY +S + K
Sbjct: 461 IWFEENQRMF-----EKSVKLTKNYHLWWSYIPHFIHSPFYCYAYSYGQLLTLALYGLYK 515
Query: 111 KRQIRENLKNRPN--PLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSV 168
K +E +K L SPKE +S +I SK+ E+ +E + ERL +
Sbjct: 516 KSDAKEFVKTYTEFLSLGGSKSPKELVSMFGFDIDSKEFWEIGMQEVRHLLEEFERLLAC 575
Query: 169 TE 170
E
Sbjct: 576 KE 577
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,199
Number of Sequences: 1491
Number of extensions: 8134
Number of successful extensions: 56
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 30
length of query: 188
length of database: 494,079
effective HSP length: 73
effective length of query: 115
effective length of database: 385,236
effective search space: 44302140
effective search space used: 44302140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)