BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644967|ref|NP_207137.1| hypothetical protein
[Helicobacter pylori 26695]
(116 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERA... 25 0.43
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 25 0.74
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 23 1.6
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 2.8
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 4.8
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 22 4.8
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 22 6.3
ref|NP_223061.1| putative Outer membrane protein [Helicobac... 22 6.3
ref|NP_222942.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_222740.1| putative carboxynorspermidine decarboxylas... 22 6.3
ref|NP_224107.1| putative ribosomal protein L25 [Helicobact... 21 8.2
ref|NP_222848.1| putative [Helicobacter pylori J99] 21 8.2
>ref|NP_223609.1| 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE [Helicobacter pylori
J99]
Length = 393
Score = 25.4 bits (54), Expect = 0.43
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 23 GYNLSVYSYEGKRITKTYGLLTDILSYGWYKNLDAMRRMVILD 65
G+ L+ +Y+ + + L + L + W KNL ++ +V+ +
Sbjct: 84 GFELAAQTYQHSQHIEVRYLPFETLLFAWEKNLKRLKTLVVTE 126
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 24.6 bits (52), Expect = 0.74
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 70 LGLNGLLK--FKQFIKAIEDKNYALAVERLQKSPYFNQVKKER 110
+ L G+LK K FI E+ + L E S YF Q+K+++
Sbjct: 22 IALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKEKK 64
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 23.5 bits (49), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (67%), Gaps = 1/19 (5%)
Query: 18 PTI-GYGYNLSVYSYEGKR 35
PTI GY YN+ Y Y+ K+
Sbjct: 354 PTIWGYNYNIKPYEYDLKK 372
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 22.7 bits (47), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 75 LLKFKQFIKAIEDKNYALAVERLQKSPYFN 104
LL FK+ +K L++E +P FN
Sbjct: 557 LLDFKETLKRTSSNQLGLSLEPYLNNPLFN 586
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 21.9 bits (45), Expect = 4.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 78 FKQFIKAIEDKNYALAVERLQKSPYFNQVKKER 110
FK IKA+++ Y + L + + K+ER
Sbjct: 126 FKTIIKALQEAGYTTHYQILNSADFQLAQKRER 158
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 21.9 bits (45), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (47%)
Query: 56 DAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQ 98
DA+R + L S LG K+ + A +D L+ ERLQ
Sbjct: 158 DALRILRALRFSATLGFKIAASTKRAVFACKDLLKHLSKERLQ 200
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 21.6 bits (44), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 39 TYGLLTDILSYGWYKNLDA 57
+YG L + YG YK DA
Sbjct: 501 SYGQLLTLALYGLYKKSDA 519
>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 6.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 19 TIGYGYNLSVYSYEGKRIT 37
T+ YG +L Y+YE K ++
Sbjct: 245 TLNYGIHLVDYTYERKGVS 263
>ref|NP_222942.1| putative [Helicobacter pylori J99]
Length = 123
Score = 21.6 bits (44), Expect = 6.3
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 42 LLTDILSYGWYKNLDAMRRMVILDLSYNLGL 72
LL ++ + W+ NL A I D Y L L
Sbjct: 3 LLIALVLFLWWLNLGAKEADFISDWEYGLAL 33
>ref|NP_222740.1| putative carboxynorspermidine decarboxylase [Helicobacter pylori
J99]
Length = 405
Score = 21.6 bits (44), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 84 AIEDKNYALAVERLQKSPYFNQVKKERQG 112
AI YAL ERL+K+ ++ +++ G
Sbjct: 6 AIPTPCYALESERLEKNAKILEIVRQQSG 34
>ref|NP_224107.1| putative ribosomal protein L25 [Helicobacter pylori J99]
Length = 178
Score = 21.2 bits (43), Expect = 8.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 87 DKNYALAVERLQKSPYFNQV 106
DK + + V+ QK+P N++
Sbjct: 63 DKTFEVVVQEYQKNPVTNEL 82
>ref|NP_222848.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.2 bits (43), Expect = 8.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 24 YNLSVYSYEGKRITKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNL 70
Y LS + K++ Y + L W+ N A+R ++D + NL
Sbjct: 109 YELS--EFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNL 153
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,610
Number of Sequences: 1491
Number of extensions: 6046
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 12
length of query: 116
length of database: 494,079
effective HSP length: 67
effective length of query: 49
effective length of database: 394,182
effective search space: 19314918
effective search space used: 19314918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)