BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644968|ref|NP_207138.1| hypothetical protein
[Helicobacter pylori 26695]
(88 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223971.1| putative [Helicobacter pylori J99] 30 0.009
ref|NP_223591.1| putative [Helicobacter pylori J99] 28 0.033
ref|NP_223371.1| putative abc transporter, ATP-binding prot... 27 0.074
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 25 0.28
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 0.48
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 0.82
ref|NP_223387.1| putative [Helicobacter pylori J99] 23 0.82
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 23 1.4
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 22 1.8
ref|NP_223712.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_222932.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223897.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223322.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 3.1
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 22 3.1
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 21 4.1
ref|NP_223410.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 21 5.3
ref|NP_223643.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223623.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223915.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANS... 20 6.9
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 20 9.0
ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 20 9.0
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 20 9.0
ref|NP_222764.1| putative [Helicobacter pylori J99] 20 9.0
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 30.0 bits (66), Expect = 0.009
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 1 MEILKLEGCEKHCKKKYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQ 60
+E+ KL+ EKH K+ E++IKE L + PY +L + +N E + +
Sbjct: 98 LELEKLQALEKHLKESMEHERLIKE-SQALFLQEHCPYLSGVKNLEEASNALEVQEKNNA 156
Query: 61 IISILMKTPK 70
+ L+K PK
Sbjct: 157 L--FLLKEPK 164
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 28.1 bits (61), Expect = 0.033
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 19 IEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQII 62
++K IKEV EL + +P EY +NA+ K+ E+L I+
Sbjct: 5 LDKSIKEVVDELNGRYFLPDIQREYVWLQNADGKKIEQLFDSIL 48
>ref|NP_223371.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 240
Score = 26.9 bits (58), Expect = 0.074
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 4/36 (11%)
Query: 1 MEILKLEGCEKHCKKKYAIEKVIKEVGLELKSKSVM 36
M+ILK E K KK K++ +V LE+KS V+
Sbjct: 1 MDILKAEHLNKQIKKT----KIVSDVSLEVKSGEVV 32
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 55 ERLRSQIISILMKTPK 70
ER R +I LMK PK
Sbjct: 141 ERRRVEIARALMKNPK 156
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.4 bits (54), Expect = 0.21
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 14 KKKYAIEKVIKEVGLELKSKSVM 36
KK IEKV++E GL+ K+K M
Sbjct: 8 KKSTLIEKVLQEQGLQEKAKPFM 30
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 47 KNANRKEPERLRSQIISILMKTPKGREILKEYLNEGCIL 85
+NA + +L + + +++ K P RE+ ++ G IL
Sbjct: 342 ENAQKSLSSQLNNIMGALIEKYPNQREVFEKAKQNGVIL 380
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 25.0 bits (53), Expect = 0.28
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 1 MEILKLEGCEKHCKK--KYAIEKVIK-EVGLELKSKSVMPYFFNEYDLTKNANRKEPERL 57
++ L+ +G K KK + A E V+ EV + KS ++ + KN KE +
Sbjct: 38 IDFLREKGLSKAAKKADRIAAEGVVALEVAPDFKSAMMVEINSETDFVAKNEGFKELVKK 97
Query: 58 RSQIISI--------LMKTPKGREILKEYLNEGCILLGE 88
+ I L+K+P + +EYL+ ++GE
Sbjct: 98 TLETIKTHNIHTTEELLKSPLDNKPFEEYLHSQIAVIGE 136
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.3 bits (51), Expect = 0.48
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 20 EKVIKEVGLELKSKSVMPYFFNEYDLTKNAN 50
E E+ LE + ++ + N++DLTK+ N
Sbjct: 95 ETAYNEMFLECDKQFILESWLNDFDLTKDYN 125
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 70 KGREILKEYLNE 81
KGRE KE+ NE
Sbjct: 194 KGREDCKEFFNE 205
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 0.82
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 42 EYDLTKNANRKEPERLRSQI 61
E +L K+AN K PE +R+ +
Sbjct: 133 ELELLKDANFKHPENIRASL 152
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.5 bits (49), Expect = 0.82
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Query: 22 VIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQIISILMKTPKGREILKEYLN 80
+I VGL L + F + D K+ RKE ++ QI +++ K R ++ Y N
Sbjct: 261 LIAGVGLALVGVGKSIWSFFDSDYKKSQQRKEVDKNLHQICEKIVQDVKSR--IESYKN 317
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 18 AIEKVIKEVGLELKSKSVMPYFFNEYDL 45
+I+K + E+ L L+ K + Y F +DL
Sbjct: 445 SIQKSVLELLLNLQEKQDLSYLFISHDL 472
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/28 (28%), Positives = 18/28 (63%)
Query: 43 YDLTKNANRKEPERLRSQIISILMKTPK 70
Y+++ N ++ +R+R +I ++ TPK
Sbjct: 7 YNVSNNFSKFNIKRVRGYLICLVCNTPK 34
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 7/29 (24%)
Query: 55 ERLRSQIISILMKTPKGREILKEYLNEGC 83
ER +Q ++ L E+LK+YL+E C
Sbjct: 35 ERFHNQELNAL-------ELLKDYLHESC 56
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/28 (35%), Positives = 14/28 (49%)
Query: 32 SKSVMPYFFNEYDLTKNANRKEPERLRS 59
S + P F E +AN K PE+ R+
Sbjct: 119 SSNKKPEHFEEMHFDLHANNKTPEKKRA 146
>ref|NP_223897.1| putative [Helicobacter pylori J99]
Length = 152
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 10 EKHCKKKYAIEKVIKEVGLELKSKSVMPYFFNEY 43
+K+ +KK A+E +K + L L+ K+ + F Y
Sbjct: 7 KKNKEKKQALENPLKGLYLSLRLKAFITDIFMIY 40
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 21.6 bits (44), Expect = 3.1
Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 5 KLEGCEKHCKKKYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLR 58
K+E E K++ +++K I++ ELKSK + DL +KE + R
Sbjct: 25 KVEALEGR-KQESSLDKKIRQ---ELKSKELKNKELKNKDLKNKEEKKETKAKR 74
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 10 EKHCKKKYAIEKVIKEVGLELK 31
E K+Y EK IK+ LE K
Sbjct: 1469 EPDITKQYETEKTIKDKSLEAK 1490
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 10 EKHCKKKYAIEKVIKE 25
+KH +K++A EK +KE
Sbjct: 57 KKHAEKEHAKEKHVKE 72
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 21.2 bits (43), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
Query: 55 ERLRSQIISIL--MKTPKG---REILKEYLNEGCI 84
E +R Q IL +K P+ E+LKEYL E I
Sbjct: 422 ENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEDLI 456
>ref|NP_223410.1| putative [Helicobacter pylori J99]
Length = 235
Score = 21.2 bits (43), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 12 HCKKKYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQI 61
HC + + V GL++ S+ V D+ KN R+ ERLR +I
Sbjct: 191 HCIELGSFNAVTASFGLQIASEVVQ-------DIIKN-ERQWNERLRRRI 232
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 20.8 bits (42), Expect = 5.3
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 10 EKHCKKKYAIEKVIKEVGLELKSK 33
+K CK Y I VIK L++ K
Sbjct: 408 DKKCKDHYKIGDVIKVKILKINKK 431
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 30 LKSKSVMPYFFNEYDLTKNANRKEPERLRSQII 62
+K+K +P N +L + N K+P+ + +I
Sbjct: 170 IKNKEPVPLVDNNGELVIDKNTKKPKHKQFAVI 202
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 20.8 bits (42), Expect = 5.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 37 PYFFNEYDLTKN 48
PY FNE + KN
Sbjct: 71 PYIFNETSMVKN 82
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 20 EKVIKEVGLELKSKS 34
+K +KE G++LK KS
Sbjct: 53 KKQLKERGIQLKEKS 67
>ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 20.4 bits (41), Expect = 6.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 30 LKSKSVMPYFFNEYDLTKNANRKEPERLRSQIISILMKTPKGREI 74
L+ K + YFF + + K + +SQ + I+ ++ G+ I
Sbjct: 3 LEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSI 47
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 20.0 bits (40), Expect = 9.0
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 14 KKKYAIEKVIKEVGLELKSKSVMPY 38
++ + IE++ KE+ ++ +K + P+
Sbjct: 318 EEAFLIERLRKELNFKIYNKDLYPF 342
>ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 350
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 17 YAIEKVIKEVGLELKSKSV 35
+ I VIKEVG E+K V
Sbjct: 64 HEIAGVIKEVGKEVKKFKV 82
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 31 KSKSVMPYFFNEYDLTKNANRKEPERLRSQ 60
K + PY T NAN +P +Q
Sbjct: 246 KPNIIAPYSLYRLKETNNANEAQPSPYATQ 275
>ref|NP_222764.1| putative [Helicobacter pylori J99]
Length = 330
Score = 20.0 bits (40), Expect = 9.0
Identities = 12/58 (20%), Positives = 23/58 (38%)
Query: 9 CEKHCKKKYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRKEPERLRSQIISILM 66
CE + Y K ++E K PY ++ K + +RL + ++ L+
Sbjct: 220 CEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAVYNENQQRLPATYVNFLL 277
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,766
Number of Sequences: 1491
Number of extensions: 4319
Number of successful extensions: 30
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of query: 88
length of database: 494,079
effective HSP length: 64
effective length of query: 24
effective length of database: 398,655
effective search space: 9567720
effective search space used: 9567720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)