BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644969|ref|NP_207139.1| hypothetical protein
[Helicobacter pylori 26695]
         (31 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223741.1|  putative [Helicobacter pylori J99]               37  1e-04
ref|NP_224155.1|  putative [Helicobacter pylori J99]               35  3e-04
ref|NP_222918.1|  putative [Helicobacter pylori J99]               31  0.005
ref|NP_223042.1|  CTP SYNTHASE [Helicobacter pylori J99]           20  8.4

>ref|NP_223741.1| putative [Helicobacter pylori J99]
          Length = 290

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 1  MLKNFKKAFFRALCLGALCLLG 22
          ML+N KK+ FR LCLGALCL G
Sbjct: 1  MLENVKKSLFRVLCLGALCLGG 22



>ref|NP_224155.1| putative [Helicobacter pylori J99]
          Length = 256

 Score = 35.4 bits (80), Expect = 3e-04
 Identities = 16/22 (72%), Positives = 17/22 (76%)

Query: 1  MLKNFKKAFFRALCLGALCLLG 22
          ML + KKA FR LCLGALCL G
Sbjct: 1  MLGSVKKAVFRVLCLGALCLCG 22



>ref|NP_222918.1| putative [Helicobacter pylori J99]
          Length = 250

 Score = 31.2 bits (69), Expect = 0.005
 Identities = 14/22 (63%), Positives = 15/22 (67%)

Query: 1  MLKNFKKAFFRALCLGALCLLG 22
          ML + KK  F  LCLGALCL G
Sbjct: 1  MLGSVKKTLFGVLCLGALCLRG 22



>ref|NP_223042.1| CTP SYNTHASE [Helicobacter pylori J99]
          Length = 538

 Score = 20.4 bits (41), Expect = 8.4
 Identities = 8/23 (34%), Positives = 13/23 (55%)

Query: 6   KKAFFRALCLGALCLLGEWCSNL 28
           +K  F  +CLG    + E+C N+
Sbjct: 370 EKLPFLGICLGMQLAIVEFCRNV 392



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.336    0.148    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,143
Number of Sequences: 1491
Number of extensions: 573
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 31
length of database: 494,079
effective HSP length: 7
effective length of query: 24
effective length of database: 483,642
effective search space: 11607408
effective search space used: 11607408
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 41 (20.4 bits)