BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644970|ref|NP_207140.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 25 0.55
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 25 0.71
ref|NP_224097.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 24 1.6
ref|NP_223337.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 22 4.6
ref|NP_223827.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223607.1| putative PROLIPOPROTEIN DIACYLGLYCERYL TRA... 22 4.6
ref|NP_223426.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223873.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 22 7.9
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 22 7.9
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 25.4 bits (54), Expect = 0.55
Identities = 21/86 (24%), Positives = 43/86 (49%), Gaps = 4/86 (4%)
Query: 43 VLSLLGGSVGFLVAMVVSHHKILKPEF-KYGVSLIYLIESTILYFVSKDLSWIVALTI-- 99
+L + GG + + V+S+H+IL+P K+ + Y + + L+ I L +
Sbjct: 111 LLRVYGGELNAQILGVISNHEILRPLVEKFDIPYFYAPCVDQILHEKEVLATIKDLELKH 170
Query: 100 -FSLSLILVAFKIFLLKDNPNKRFKN 124
S L+++A + +L + KR++N
Sbjct: 171 KVSADLLVLAKYMRILSHDFTKRYEN 196
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 25.0 bits (53), Expect = 0.71
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 4/60 (6%)
Query: 1 MSVEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVS 60
M V S + LL+ N ++ M KNS + LWVL ++ + L+ M +S
Sbjct: 180 MCVGILSNIMLLVANFSVYFFMGNRKNSGA----NLARMILWVLQIILPFLTLLLQMYLS 235
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 24.3 bits (51), Expect = 1.2
Identities = 17/75 (22%), Positives = 31/75 (40%), Gaps = 9/75 (12%)
Query: 41 LWVLSLLGGSVGFLVAMVVSHHKILKPEFKYGVSLIYLIESTILYFVSKDLSWIVALTIF 100
+W L + V +V ++H G+SL+ + F+ + + + IF
Sbjct: 305 VWPFESLPSYLQVFVQIVPAYH---------GISLLGRLNQMHAEFIDVSIHFYALIAIF 355
Query: 101 SLSLILVAFKIFLLK 115
+S I FK+ LK
Sbjct: 356 IVSFIGCVFKLSSLK 370
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 23.9 bits (50), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (55%)
Query: 74 SLIYLIESTILYFVSKDLSWIVALTIFSLSLILVAFKIFLL 114
S++ I T + FV+KDL I T SL ++ + + I LL
Sbjct: 159 SVVGAIALTDIMFVAKDLIGIYYKTTESLLMLSLTYLIALL 199
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 3.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 83 ILYFVSKDLSWIVALTIFSLSLILVAFKIF 112
I+ +++ + + L ++ LSL++V +KIF
Sbjct: 225 IMGLLNEKMHKALILGVYGLSLLIVLYKIF 254
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 89 KDLSWIVALTIFSLSLILVAFKIFLLKDNPNKRFKNNK 126
+++S +VAL +F + +A KIF K FK +
Sbjct: 104 EEVSIVVALVLFCENYRSIASKIFDAKPRDYAHFKGKE 141
>ref|NP_223827.1| putative [Helicobacter pylori J99]
Length = 459
Score = 22.3 bits (46), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 41 LWVLSLLGGSVGFLVAMVVSHHKILKPEF 69
+WV + + FLVA+ V++++I K F
Sbjct: 418 IWVTYPIAQFLAFLVALGVTYYEIKKGVF 446
>ref|NP_223607.1| putative PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE [Helicobacter
pylori J99]
Length = 283
Score = 22.3 bits (46), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 44 LSLLGGSVGFLVAMVVSHHKILK 66
+S GG VGFL+A + K LK
Sbjct: 112 MSYHGGLVGFLIASYLYSRKDLK 134
>ref|NP_223426.1| putative [Helicobacter pylori J99]
Length = 245
Score = 22.3 bits (46), Expect = 4.6
Identities = 13/49 (26%), Positives = 28/49 (56%), Gaps = 6/49 (12%)
Query: 40 ALWVLSLLGGSVGFLVAMVVSHHKILKPEFKYGVSLIYLIESTILYFVS 88
+L++L+L FL+ +V+ +HK L ++Y +LI ++ ++ S
Sbjct: 163 SLFILAL------FLLILVLIYHKRLFGLYEYANTLILIVGLCVVVLCS 205
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 21.6 bits (44), Expect = 7.9
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 11/64 (17%)
Query: 71 YGVSLIYL-----------IESTILYFVSKDLSWIVALTIFSLSLILVAFKIFLLKDNPN 119
+GVS+I L ++ T YF + + ++T+ L L++ FK + LK
Sbjct: 7 FGVSMILLANLCFGIMSAFVKITADYFSPMENVFYRSITMTLLLLLIYPFKPYRLKSYKQ 66
Query: 120 KRFK 123
FK
Sbjct: 67 GGFK 70
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 21.6 bits (44), Expect = 7.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 76 IYLIESTILYFVSKDLSWIVALTIFSLSLILVAFKIF 112
+ +++ + + DL + + I L LI+VAF+IF
Sbjct: 155 LVVVDGVYSHGLGVDLIKDLGILIVFLILIIVAFQIF 191
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 21.6 bits (44), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 85 YFVSKDLSWIVALTIFSLSLILVAFKIFLLKDNPN 119
Y +KDL + + F L +AFK + NPN
Sbjct: 380 YINAKDLWKKILMNYFEAGLPFLAFKDNANRCNPN 414
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.143 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,589
Number of Sequences: 1491
Number of extensions: 5370
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 12
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 44 (21.6 bits)