BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644971|ref|NP_207141.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223654.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_223723.1| putative [Helicobacter pylori J99] 26 0.48
ref|NP_223874.1| putative [Helicobacter pylori J99] 25 0.62
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 25 1.1
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 25 1.1
ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE ... 24 1.4
ref|NP_222860.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 23 2.4
ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacte... 23 2.4
ref|NP_223812.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223666.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 23 3.1
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 22 5.3
ref|NP_223258.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_223633.1| putative [Helicobacter pylori J99] 22 6.9
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 6.9
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 22 6.9
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 22 9.0
ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 22 9.0
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 26.6 bits (57), Expect = 0.28
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 4 FFKIILGTSVIVGVLLGLWRLTYDKFYF--SLVFVLLILGIVACSYISLKMHQRKCFAKC 61
FF +ILG + +G+LL + L + + +L ++L LG++ + L + +K
Sbjct: 166 FFLVILGELLFLGLLLIIVLLVTAEIFMWSALGLIVLPLGLIPQTKGMLFSYLKK----- 220
Query: 62 FVNSESFLSKMLHSPIMVICFYFIFSIFTSIS 93
+S L+ P M++ +F + I ++
Sbjct: 221 ------LISLTLYKPCMMLVAFFNYGIIYKVN 246
>ref|NP_223723.1| putative [Helicobacter pylori J99]
Length = 143
Score = 25.8 bits (55), Expect = 0.48
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 7 IILGTSVIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFA 59
I+L +++ GV + W + +F FS V+++LG++ +K H+ FA
Sbjct: 64 ILLSIALLSGVFI--WAM--QQFEFSFSAVVMLLGLLLMLIAEIKRHKSVKFA 112
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 25.4 bits (54), Expect = 0.62
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 27 DKFYFSLVFVLLILGIVACSYISLKMHQRKCFAKCFVNSESFLSKMLHSPIMVI 80
D + +VF++L LG++ IS+ ++ AK F S+++ K+ + ++
Sbjct: 30 DLIFIVMVFLVLALGLLMSEEISISYNE----AKDFFYSDAWFVKIAQKSVAIL 79
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 24.6 bits (52), Expect = 1.1
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 34 VFVLLILGIVACSYISLKMHQRKCFAKCFVNSESFLSKMLHSPIMVICFYFIFSIFTSIS 93
+F+LL+ IV + +RK F C + E L + S + + F++ F + +
Sbjct: 85 LFLLLLNAIVVLLSVIYVKERRKDFVICLLLLEGILMGVFSS--LNVIFFYAFWEISLLP 142
Query: 94 IVYSV 98
++Y +
Sbjct: 143 VLYLI 147
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 24.6 bits (52), Expect = 1.1
Identities = 24/76 (31%), Positives = 35/76 (45%), Gaps = 10/76 (13%)
Query: 62 FVNSESFLSKMLHSPIMVICFY-----FIFSIFTSISIVYSVLDYDQMMWGFVFCTIVVC 116
F+ E F +M HS ++ FY FI S+F ++ S ++ VF +
Sbjct: 532 FLEMEGFGVEMAHS---LVNFYASNQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTI- 587
Query: 117 AVVFGTLEKNAQEYHQ 132
V+ GTL K QEY Q
Sbjct: 588 -VLTGTLSKPRQEYAQ 602
>ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 433
Score = 24.3 bits (51), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 41 GIVACSYISLKMHQRKCFAKCFVNSESFL 69
G++ C+Y K HQ F+ S+S L
Sbjct: 357 GVITCNYDGKKKHQTIIGENVFIGSDSQL 385
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.9 bits (50), Expect = 1.8
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 31 FSLVFVLLILGIVACSYISLKMHQRKCFAKCFVNSESF---LSKMLHSPIMVICFYFIFS 87
++L F+L +VA S ++K + F+K V S S L +L I++ +FIFS
Sbjct: 49 YTLFFILGAFLLVAISVGAIK-NLNALFSKRGVLSFSLPISLESLLLPKILLPMVFFIFS 107
Query: 88 IFTSISIV 95
+F ++ V
Sbjct: 108 LFWFVASV 115
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 23.5 bits (49), Expect = 2.4
Identities = 29/133 (21%), Positives = 52/133 (38%), Gaps = 34/133 (25%)
Query: 22 WRLTYDKFYFS------LVFVLLILGI--------VACSYISLKMHQRKCF---AKCFVN 64
W++ YD F+FS F ++GI V +Y+ + +K + + F+
Sbjct: 73 WKMVYDFFHFSSPVRLMYFFSFCLVGIYLFRMFYGVFFTYLRGRFSNKKAYQIKQQLFLQ 132
Query: 65 --SESFLSKMLH------------SPIMVICFYFIFSIFTSISIV---YSVLDYDQMMWG 107
++LS + H + M + F S+ T I+++ YS L
Sbjct: 133 HIKNNYLSHLNHNLDSLRDIINNKAEGMFMSFNAFLSLLTEITVIVFFYSTLILTNWKIT 192
Query: 108 FVFCTIVVCAVVF 120
VF TI+ + F
Sbjct: 193 LVFTTILALQIFF 205
>ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacter pylori J99]
Length = 407
Score = 23.5 bits (49), Expect = 2.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 7 IILGTSVIVGVLLGLWRLTYDKFYFSLVF 35
I++ ++++G + L+ LT+ F+ S++F
Sbjct: 301 ILIALAILIGGKIALFALTFVGFFNSIMF 329
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 23.5 bits (49), Expect = 2.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 4 FFKIILGTSVIVGVLLGLWRLTYDKFYFSLV----FVLLILGIVACSYISL 50
FF I + ++ + +L+GL+ + V F+LLI+ I A Y+SL
Sbjct: 193 FFTIAM--TIPIAILMGLYMRFFRPHKILEVSVIGFILLIIAIYAGKYVSL 241
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 23.1 bits (48), Expect = 3.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 1 MSYFFKIILGTSVIVGVLLGLWRLT------YDK------FYFSLVFVLLILGIVACSY 47
M+Y KII + VI +LLG ++ T Y K FY L+ +L++ A Y
Sbjct: 238 MTYLEKIIYLSLVIFMLLLGFFQQTRGFLVSYVKKIISLTFYMPLLLLLVLFNSFALQY 296
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 23.1 bits (48), Expect = 3.1
Identities = 15/72 (20%), Positives = 30/72 (40%)
Query: 49 SLKMHQRKCFAKCFVNSESFLSKMLHSPIMVICFYFIFSIFTSISIVYSVLDYDQMMWGF 108
SL + + K F+ + S S S IM++ + + ++ + QM+ F
Sbjct: 263 SLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMVF 322
Query: 109 VFCTIVVCAVVF 120
++V +VF
Sbjct: 323 AITGLIVTPIVF 334
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 22.3 bits (46), Expect = 5.3
Identities = 26/102 (25%), Positives = 46/102 (44%), Gaps = 17/102 (16%)
Query: 1 MSYFFKIILGTSVIVGVLLGLWRLTY-DKFYFSLVFV----LLILGIVACSYISLKMHQR 55
+S FF+ + T + V + L L + D+ + LV+V L +L + S ++ K ++
Sbjct: 205 LSSFFEKMFMTLIFVLIPLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKP 264
Query: 56 K------------CFAKCFVNSESFLSKMLHSPIMVICFYFI 85
K + F+ SFL K L I+ + F+FI
Sbjct: 265 KGVMLSGVLLFIVSYLCLFLADSSFLGKYLWLFIVGVAFFFI 306
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 22.3 bits (46), Expect = 5.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 5 FKIILGTSVIVGVLLGLWRLTY-------DKFYFSLVFVLLILGIVA---CSYISLKMHQ 54
+K TSV +LG + Y +KF + + + GI A C +I ++H+
Sbjct: 214 YKTFNPTSVAQSFILGSLCVFYKNYIQKHEKFDYWFLLGAMQAGIAAVAYCQFIYKEIHK 273
Query: 55 RKCFAKCFVNSESFL 69
R FV + +L
Sbjct: 274 RNIDTLVFVARDGYL 288
>ref|NP_223633.1| putative [Helicobacter pylori J99]
Length = 274
Score = 21.9 bits (45), Expect = 6.9
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 72 MLHSPIMVICFYFIFSIFTSISIVYSVLDYDQMMWGFVFCTIVVCAVVFGTL 123
+L I+V C F FS F + + D+++ FV + ++ T+
Sbjct: 21 ILIKAIVVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTI 72
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 21.9 bits (45), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 2 SYFFKIILGTSVIVGVLLGLW 22
S FF +LG + + V+LGLW
Sbjct: 115 SNFFTDMLGWLMPILVILGLW 135
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 21.9 bits (45), Expect = 6.9
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 8 ILGTSVIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFAKCFVNSES 67
++G+S + G L GLW + + +I+ + +S+K + + ES
Sbjct: 64 MVGSSFLYGFLYGLWPIAW-----------IIIAAIFLYKLSVKSGYFE------ILKES 106
Query: 68 FLSKMLHSPIMVICFYFIFSIF 89
S L I+VI F F F
Sbjct: 107 VQSITLDHRILVILIGFCFGSF 128
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 21.6 bits (44), Expect = 9.0
Identities = 7/23 (30%), Positives = 15/23 (64%)
Query: 28 KFYFSLVFVLLILGIVACSYISL 50
+F+FSL+ VL ++ ++ I +
Sbjct: 156 EFFFSLIKVLAVIAFISIGVIGI 178
>ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 488
Score = 21.6 bits (44), Expect = 9.0
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 6/89 (6%)
Query: 13 VIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFAKCFVNSESFLSKM 72
+++GV+ LT K Y L++ L I+ +VA + M F V E+ +
Sbjct: 111 LVLGVISLFAGLTQSKEYAELMWPLDIIVVVAWVLWGVNM-----FGSMSVRRENTIYVS 165
Query: 73 LHSPIMVICFYFIFSIFTSISI-VYSVLD 100
L I + IF ++SI Y V D
Sbjct: 166 LWYYIATYVGIAVMYIFNNLSIPTYFVAD 194
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.338 0.147 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,028
Number of Sequences: 1491
Number of extensions: 5442
Number of successful extensions: 37
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 20
length of query: 140
length of database: 494,079
effective HSP length: 69
effective length of query: 71
effective length of database: 391,200
effective search space: 27775200
effective search space used: 27775200
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 44 (21.6 bits)