BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644667|ref|NP_206836.1| aspartate 1-decarboxylase
(panD) [Helicobacter pylori 26695]
(117 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222752.1| ASPARTATE 1-DECARBOXYLASE [Helicobacter py... 225 3e-61
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.089
ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE P... 24 1.3
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 23 2.9
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 4.9
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 22 6.4
ref|NP_223252.1| putative [Helicobacter pylori J99] 21 8.3
>ref|NP_222752.1| ASPARTATE 1-DECARBOXYLASE [Helicobacter pylori J99]
Length = 117
Score = 225 bits (573), Expect = 3e-61
Identities = 115/117 (98%), Positives = 116/117 (98%)
Query: 1 MTFEMLYSKIHRATITDANLNYIGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVI 60
MTFEMLYSKIHRATITDANLNYIGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVI
Sbjct: 1 MTFEMLYSKIHRATITDANLNYIGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVI 60
Query: 61 LGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKNEILEKG 117
LGKKRG+ICVNGAAARKVAIGDVVIILAYASMNEDEIN HKPSIVLVDEKNEILEKG
Sbjct: 61 LGKKRGKICVNGAAARKVAIGDVVIILAYASMNEDEINTHKPSIVLVDEKNEILEKG 117
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.7 bits (60), Expect = 0.089
Identities = 25/102 (24%), Positives = 45/102 (43%), Gaps = 4/102 (3%)
Query: 15 ITDANLNYIGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAA 74
+ DAN + +I D +A + + V V+V NGE TY + R + A
Sbjct: 137 LKDANFKHPENIRASLDHDAIAHILKRHGVNSVNVKNGESPITYEDIANYRYIVNNADAI 196
Query: 75 ARKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKNEILEK 116
R + D +I A+ +N + + +++KNE++ K
Sbjct: 197 LRTLDNEDKEVISAFKQINGYAVVVEQ----AINKKNELVLK 234
>ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter
pylori J99]
Length = 417
Score = 23.9 bits (50), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 76 RKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKN 111
+K+ + + L Y + + I+A+K SIV V +N
Sbjct: 303 KKLGLKESAEQLLYEGRSNESIDAYKDSIVYVSREN 338
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 23.5 bits (49), Expect = 1.7
Identities = 18/79 (22%), Positives = 31/79 (38%)
Query: 15 ITDANLNYIGSITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAA 74
+ DAN + + D + + + V V+V NGE TY + R +
Sbjct: 784 LQDANFRHPEDVRASLDHEAITHILKRHGVNSVNVRNGESPITYEDIANYRDIVNNADEI 843
Query: 75 ARKVAIGDVVIILAYASMN 93
R + G+ I A+ +N
Sbjct: 844 IRAIGKGNKENITAFKQIN 862
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 22.7 bits (47), Expect = 2.9
Identities = 18/80 (22%), Positives = 32/80 (39%), Gaps = 4/80 (5%)
Query: 30 EDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGE----ICVNGAAARKVAIGDVVI 85
++ KL K +V ++ N ++ + KR +C+N + + VV
Sbjct: 123 DEANKLPKPNFPKRVAVITSQNSAAWADMKKIASKRWPMCELVCINTLMQGEGCVQSVVE 182
Query: 86 ILAYASMNEDEINAHKPSIV 105
+AYA D NA +V
Sbjct: 183 SIAYADSFYDTKNAFDAIVV 202
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 21.9 bits (45), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 26 ITIDEDLAKLAKLREGMKVEIVD 48
+T D+D+AK+ R + +I+D
Sbjct: 29 VTTDKDIAKIKDYRPSVASQILD 51
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 21.6 bits (44), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 99 AHKPSIVLVDEKNEILEK 116
A KP I+L+DE L+K
Sbjct: 427 ALKPRIILLDEPTSALDK 444
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 21.2 bits (43), Expect = 8.3
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 89 YASMNEDEINAHKPS 103
+ S+N+DEI+ + PS
Sbjct: 627 FGSINKDEISVYTPS 641
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.136 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,248
Number of Sequences: 1491
Number of extensions: 4077
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 117
length of database: 494,079
effective HSP length: 67
effective length of query: 50
effective length of database: 394,182
effective search space: 19709100
effective search space used: 19709100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)