BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644972|ref|NP_207142.1| hypothetical protein
[Helicobacter pylori 26695]
         (154 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224142.1|  TYPE I RESTRICTION ENZYME (RESTRICTION SUB...    22  8.1
ref|NP_223515.1|  putative [Helicobacter pylori J99]               22  8.1
ref|NP_223252.1|  putative [Helicobacter pylori J99]               22  8.1

>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 991

 Score = 21.9 bits (45), Expect = 8.1
 Identities = 6/16 (37%), Positives = 13/16 (80%)

Query: 74  SDSIYSSCDYMDYFLK 89
           ++S+Y++C Y + FL+
Sbjct: 509 AESVYNACRYFELFLE 524



>ref|NP_223515.1| putative [Helicobacter pylori J99]
          Length = 541

 Score = 21.9 bits (45), Expect = 8.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 78  YSSCDYMDYFLKARKMLEGFAWWSMFKAESM 108
           +S C+   YF  A+  ++G A++     ES+
Sbjct: 15  FSGCNMRKYFKPAKHQIKGEAYFPNHLQESI 45



>ref|NP_223252.1| putative [Helicobacter pylori J99]
          Length = 978

 Score = 21.9 bits (45), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 53  IYHGNMPDYLRPALIDTIKAASDSIYS 79
           I  G   +  R  +IDTIKA S+  ++
Sbjct: 493 IQEGENSEVFRRKIIDTIKAQSEDKFT 519



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.330    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,935
Number of Sequences: 1491
Number of extensions: 5669
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 494,079
effective HSP length: 70
effective length of query: 84
effective length of database: 389,709
effective search space: 32735556
effective search space used: 32735556
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)