BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644973|ref|NP_207143.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223830.1| putative [Helicobacter pylori J99] 46 2e-07
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 38 6e-05
ref|NP_223025.1| putative [Helicobacter pylori J99] 36 2e-04
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 35 4e-04
ref|NP_223889.1| putative [Helicobacter pylori J99] 34 9e-04
ref|NP_222831.1| putative [Helicobacter pylori J99] 34 0.001
ref|NP_223180.1| putative [Helicobacter pylori J99] 33 0.002
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 32 0.004
ref|NP_223773.1| putative [Helicobacter pylori J99] 32 0.006
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 31 0.010
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 30 0.012
ref|NP_223645.1| putative [Helicobacter pylori J99] 30 0.012
ref|NP_223137.1| putative [Helicobacter pylori J99] 30 0.012
ref|NP_222840.1| putative [Helicobacter pylori J99] 30 0.021
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 30 0.021
ref|NP_223788.1| putative [Helicobacter pylori J99] 29 0.028
ref|NP_223651.1| putative [Helicobacter pylori J99] 29 0.028
ref|NP_223642.1| putative [Helicobacter pylori J99] 29 0.028
ref|NP_222877.1| putative [Helicobacter pylori J99] 29 0.028
ref|NP_223219.1| putative [Helicobacter pylori J99] 29 0.036
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 28 0.047
ref|NP_223515.1| putative [Helicobacter pylori J99] 28 0.047
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 28 0.047
ref|NP_223560.1| putative [Helicobacter pylori J99] 28 0.062
ref|NP_223322.1| putative [Helicobacter pylori J99] 28 0.062
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 28 0.062
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 28 0.081
ref|NP_223176.1| putative [Helicobacter pylori J99] 28 0.081
ref|NP_223915.1| putative [Helicobacter pylori J99] 27 0.11
ref|NP_223610.1| putative [Helicobacter pylori J99] 27 0.11
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.11
ref|NP_222894.1| putative [Helicobacter pylori J99] 27 0.11
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 0.14
ref|NP_222772.1| putative [Helicobacter pylori J99] 27 0.14
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 27 0.18
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 0.18
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 27 0.18
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 0.23
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 26 0.23
ref|NP_223639.1| putative [Helicobacter pylori J99] 26 0.31
ref|NP_222782.1| putative [Helicobacter pylori J99] 26 0.31
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 25 0.40
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 25 0.40
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 25 0.52
ref|NP_224039.1| putative histidine and glutamine-rich meta... 25 0.52
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 0.52
ref|NP_223088.1| putative [Helicobacter pylori J99] 25 0.52
ref|NP_222962.1| putative [Helicobacter pylori J99] 25 0.52
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 0.68
ref|NP_223331.1| putative [Helicobacter pylori J99] 25 0.68
ref|NP_222961.1| putative [Helicobacter pylori J99] 25 0.68
ref|NP_223790.1| putative [Helicobacter pylori J99] 24 0.89
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 0.89
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 0.89
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 1.2
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 24 1.2
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 24 1.2
ref|NP_222839.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_224148.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_224073.1| putative motility protein [Helicobacter py... 23 2.0
ref|NP_222874.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori ... 23 2.6
ref|NP_224041.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 23 2.6
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 22 3.4
ref|NP_223654.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223520.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 22 3.4
ref|NP_222963.1| putative [Helicobacter pylori J99] 22 3.4
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 22 4.4
ref|NP_223770.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 4.4
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 22 4.4
ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicoba... 22 4.4
ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSP... 22 4.4
ref|NP_223330.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 5.8
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 5.8
ref|NP_223039.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 21 7.5
ref|NP_223625.1| putative [Helicobacter pylori J99] 21 7.5
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 21 7.5
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 21 7.5
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 21 7.5
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 21 7.5
ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 7.5
ref|NP_222827.1| putative [Helicobacter pylori J99] 21 7.5
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 21 9.8
ref|NP_223438.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 9.8
ref|NP_223139.1| putative [Helicobacter pylori J99] 21 9.8
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 46.2 bits (108), Expect = 2e-07
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 8 DLEQARPKLEPEKQKQEPEEQK--QEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+LEQ K E EKQK E E+QK QEKQ +++K K E+E+ K+ E N + K
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 176
Score = 41.2 bits (95), Expect = 7e-06
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQK--QEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
++ EQ + K E EKQK E E+QK QEKQ +++K K E+ ++ + E ++QK
Sbjct: 128 EQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK 183
Score = 40.8 bits (94), Expect = 9e-06
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQ-KPKQEKEESKSKEQEENKKQK 59
K+ EQ + K E EKQK E E+QK + Q K +QE+++++ ++Q+ N QK
Sbjct: 142 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQK 196
Score = 38.9 bits (89), Expect = 3e-05
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQK--QEKQDKQEQKPKQEKEESKS---KEQEENKKQKR 60
+++ E AR + + E EEQK QEKQ +++K K E+E+ K+ K++ E +KQK
Sbjct: 107 QKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT 166
Query: 61 SS 62
S+
Sbjct: 167 SN 168
Score = 35.0 bits (79), Expect = 5e-04
Identities = 18/57 (31%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
Query: 6 KEDLEQARPKLEPEKQK-QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
K+ EQ + K E EKQK E Q K ++++QK +QEK+++ + +++ K +++
Sbjct: 149 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQN 205
Score = 25.0 bits (53), Expect = 0.52
Identities = 15/58 (25%), Positives = 34/58 (57%), Gaps = 6/58 (10%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
++ K+++ QA+ + E + + + E++ EQK +QEK+++ EQE+ K ++
Sbjct: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQE---EQKTEQEKQKT---EQEKQKTEQ 147
Score = 20.8 bits (42), Expect = 9.8
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 27 EQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
E K K K Q P Q K SK+ + K I
Sbjct: 231 ECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELI 268
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 38.1 bits (87), Expect = 6e-05
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 3 NDVKEDLEQARPKLEPEK--QKQEPEEQKQEKQDKQEQKPK-QEKEESKSKEQEENK 56
++ K + E A+PK EP++ +K+EP++++ +K+ K + KPK + K + K K + E K
Sbjct: 62 SNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPK 118
Score = 37.7 bits (86), Expect = 8e-05
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 2 ENDVKEDLEQARPKLEPE-KQKQEPEEQKQEKQDKQEQKPKQE--KEESKSKEQEENKKQ 58
E KE + +PK +P+ K K +P+ + + K + + ++PK+E KEE K +E +E K+
Sbjct: 89 EEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKE 148
Query: 59 K 59
K
Sbjct: 149 K 149
Score = 33.5 bits (75), Expect = 0.001
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 13/56 (23%)
Query: 14 PKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEES-------------KSKEQEENK 56
PK +PE + +EP++++ +++ K+E+ ++ KE+S K K++E NK
Sbjct: 117 PKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNK 172
Score = 33.1 bits (74), Expect = 0.002
Identities = 15/59 (25%), Positives = 36/59 (60%), Gaps = 7/59 (11%)
Query: 11 QARPKLEP-------EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
+ +PK EP E+ K+EP++++ +++ K++ PKQ + KE+++ ++ ++S
Sbjct: 116 EPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTS 174
Score = 32.3 bits (72), Expect = 0.003
Identities = 16/46 (34%), Positives = 33/46 (70%), Gaps = 2/46 (4%)
Query: 13 RPKLEPE-KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
+PK +PE K K EP+ ++ +K++ +E+ PK+E+ + ++KE+ K+
Sbjct: 110 KPKPKPEPKPKPEPKVEEPKKEEPKEE-PKKEEAKEEAKEKSVPKQ 154
Score = 31.6 bits (70), Expect = 0.006
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
E K K+EP+E+ ++++ K+E+ K+ K + K K + + K + +
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPK 112
Score = 26.9 bits (58), Expect = 0.14
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 7 EDLEQARPKLEPEKQ--KQEPEEQKQEKQ--DKQEQKPKQEKEESKSKEQ 52
E+ ++ PK EP+K+ K+E +E+ KQ K K K ++EES +
Sbjct: 126 EEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSE 175
Score = 25.4 bits (54), Expect = 0.40
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 32 KQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
K + + KPK+E +E KE+ + ++ K+ +
Sbjct: 65 KTNAESAKPKEEPKEKPKKEEPKKEEPKKET 95
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 36.2 bits (82), Expect = 2e-04
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 2 ENDVKEDLEQARPKLEPEKQ---KQEPEEQKQEKQDKQEQKPKQE---------KEESKS 49
E + +E+LE PK E ++Q K+E +E K+EKQ+K + P + KE ++
Sbjct: 231 ELETQEELET--PKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQEN 288
Query: 50 KEQEENKKQKRSS 62
+ENKK+ + +
Sbjct: 289 SNDQENKKETQET 301
Score = 32.3 bits (72), Expect = 0.003
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
EQ P L E++ + P+E+ QE+ K+E K QE+ + K K++ Q
Sbjct: 159 EQLLPTLN-EQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQ 206
Score = 32.0 bits (71), Expect = 0.004
Identities = 17/56 (30%), Positives = 36/56 (63%), Gaps = 5/56 (8%)
Query: 6 KEDLEQARPKLEPEKQKQE----PEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
KE++++ + +++ EKQKQE P+++++ K D+ + + K+E SKE E ++
Sbjct: 183 KEEVKEMQEEVK-EKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEE 237
Score = 32.0 bits (71), Expect = 0.004
Identities = 14/52 (26%), Positives = 31/52 (58%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
+ +V ++LE P+++ QE E K+E Q+ +E+K ++ ++ ++E E
Sbjct: 225 DEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELE 276
Score = 31.2 bits (69), Expect = 0.007
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKP-KQEKEESKSKEQEENK 56
E K+ + EE + K++ QEQ+P K+E +E K ++QE+ +
Sbjct: 227 EVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEKTQ 267
Score = 30.0 bits (66), Expect = 0.016
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E+ +LE +++ + P+E+ QE Q+ +++ ++ KEE + K Q+ Q+
Sbjct: 226 EEVSKELETQEELETPKEETQE-QEPIKEETQEIKEEKQEKTQDSPSAQE 274
Score = 29.3 bits (64), Expect = 0.028
Identities = 21/55 (38%), Positives = 33/55 (59%), Gaps = 3/55 (5%)
Query: 8 DLEQARPKLEPEKQKQE-PEEQKQEKQD-KQEQKPKQEKEESKSKEQEENKKQKR 60
DLE A K EP ++Q P +QE + K+E + + +KEE K ++E +KQK+
Sbjct: 146 DLE-ALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQ 199
Score = 28.9 bits (63), Expect = 0.036
Identities = 13/49 (26%), Positives = 32/49 (64%), Gaps = 1/49 (2%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQK-PKQEKEESKSKEQE 53
+++ E + + + E +K+E +E ++E ++KQ+Q+ + ++E K K+ E
Sbjct: 167 EQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDE 215
Score = 28.5 bits (62), Expect = 0.047
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
E +++E ++ +LE + +K + E +++ ++ + Q+KE + + QE++
Sbjct: 347 EKEIQETQDETPQELEAQDEKLQENETPKDESMQESAQNLQDKETPQEETQEDH 400
Score = 28.5 bits (62), Expect = 0.047
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 ENDVKEDLEQARPKLEPE--KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+ +VKE E+ + K + E + Q+ E+ K ++ + PK E+ + + QEE + K
Sbjct: 183 KEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPK 242
Query: 60 RSS 62
+
Sbjct: 243 EET 245
Score = 27.3 bits (59), Expect = 0.11
Identities = 14/60 (23%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQE--ENKKQK 59
+++ K ++ + +EP K ++ +E + +++ + ++ QE+E K + QE E K++K
Sbjct: 206 QDEEKPKDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEK 265
Score = 26.9 bits (58), Expect = 0.14
Identities = 15/63 (23%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Query: 1 MENDVKEDLEQARPKLEPEK-QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+E +E+ ++ K + + +K+E E QEK+ ++ Q ++ E++ ++ +EN+ K
Sbjct: 316 LEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPK 375
Query: 60 RSS 62
S
Sbjct: 376 DES 378
Score = 25.0 bits (53), Expect = 0.52
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
KE++ + P+ + ++ Q+ Q+ E QD++ Q+ + K+ES +E +N + K +
Sbjct: 338 KEEIAET-PQEKEIQETQDETPQELEAQDEKLQENETPKDES-MQESAQNLQDKET 391
Score = 23.5 bits (49), Expect = 1.5
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 6/54 (11%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQE--QKPK----QEKEESKSKEQEE 54
++LE + ++ ++ +E K+E Q+ QE + P+ QE E K +E +E
Sbjct: 273 QELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQE 326
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 35.4 bits (80), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKP-KQEKEESKSKEQE 53
++P+K+ QE + K ++ KP K+EKEE+K KE+E
Sbjct: 167 IKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEE 205
Score = 27.3 bits (59), Expect = 0.11
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 28 QKQEKQDKQEQKPKQEKEESKS-KEQEENKKQKRSSYIFWG 67
QK+ +++ E PK ++ +K KE++E K+K I G
Sbjct: 170 QKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIG 210
Score = 23.5 bits (49), Expect = 1.5
Identities = 14/74 (18%), Positives = 32/74 (42%), Gaps = 7/74 (9%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQE-------QKPKQEKEESKSKEQEE 54
+ + +E++ + PK + K EE+++ K+ ++E + ++ K +
Sbjct: 170 QKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKA 229
Query: 55 NKKQKRSSYIFWGC 68
K +R Y W C
Sbjct: 230 LKSSQRKWYCLWAC 243
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 34.3 bits (77), Expect = 9e-04
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 14 PKLEPEKQKQE-----PEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
P L+ QKQE +E KQE + + +Q+ KQE ++ +EQE+ K K++S
Sbjct: 83 PPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNS 136
Score = 28.9 bits (63), Expect = 0.036
Identities = 13/53 (24%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
++ ++K++++Q + ++ KQE +++ +++Q+K E KPKQ +Q+
Sbjct: 94 IKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEK-ENKPKQNSVSPVQNDQK 145
Score = 27.7 bits (60), Expect = 0.081
Identities = 15/56 (26%), Positives = 35/56 (61%), Gaps = 2/56 (3%)
Query: 2 ENDVKEDLEQA-RPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
+ ++K++++Q + +++ E +++ +E KQE + +QE K + K+ S S Q + K
Sbjct: 91 KQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQE-KENKPKQNSVSPVQNDQK 145
Score = 27.3 bits (59), Expect = 0.11
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE-ESKSKEQEENKKQ 58
D ++ + +++ E +++ +E KQE + + +Q+ KQE+E E+K K+ + Q
Sbjct: 86 DTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQ 141
Score = 23.1 bits (48), Expect = 2.0
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
P K P + +KQ+ +++ ++ K+E K + ++E K++
Sbjct: 77 PTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQE 117
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 33.9 bits (76), Expect = 0.001
Identities = 26/70 (37%), Positives = 35/70 (49%), Gaps = 19/70 (27%)
Query: 9 LEQARPKLEPEKQKQ-------EPEEQK-----------QEKQDKQEQKPKQEKEESKSK 50
LEQ R K E E+QK E E QK Q K +++ QK +QEK+++
Sbjct: 143 LEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKS 202
Query: 51 EQE-ENKKQK 59
E E E +KQK
Sbjct: 203 EIELEQQKQK 212
Score = 32.3 bits (72), Expect = 0.003
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 18/71 (25%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQD---KQEQ---------------KPKQEKEES 47
K++ ++ KLE E+QK E E QK K + +QE+ K +QE++++
Sbjct: 133 KKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKT 192
Query: 48 KSKEQEENKKQ 58
+ ++Q+ NK +
Sbjct: 193 EQEKQKANKSE 203
Score = 32.3 bits (72), Expect = 0.003
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 10 EQARPKLEPEKQKQ-----EPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
EQ R K E EKQK E E+QKQ+ + Q K++K+ K EQ +K
Sbjct: 186 EQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEK 238
Score = 31.2 bits (69), Expect = 0.007
Identities = 30/113 (26%), Positives = 51/113 (44%), Gaps = 16/113 (14%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQ----------EKEESKSKEQEENKK 57
+L ++ K E E+QK E E+QK K + + ++ KQ ++++ KE E+N +
Sbjct: 177 ELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQ 236
Query: 58 QKRSSYIFWGCIIGLCIVVIIAKIIAFGGSSEEAKADKP-KNSLSMLKNFYLP 109
+K I I IA I E K KP K + + ++ +LP
Sbjct: 237 EKHGQLFIKKARIKTGITTGIAIEI-----EAECKTPKPAKTNQTPIQPKHLP 284
Score = 29.6 bits (65), Expect = 0.021
Identities = 19/69 (27%), Positives = 41/69 (58%), Gaps = 13/69 (18%)
Query: 3 NDVKEDLEQARPK------------LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSK 50
N + +LEQ R K ++ E+++Q+ E++KQ K +K E + +Q+K+++ +
Sbjct: 158 NKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQ-KANKSEIELEQQKQKTINT 216
Query: 51 EQEENKKQK 59
+++ K+QK
Sbjct: 217 QRDLIKEQK 225
Score = 26.9 bits (58), Expect = 0.14
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 15 KLEPEKQKQEPE------EQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
++E E++K+E EQ+++K +++ QK + + E + + Q+ NK
Sbjct: 126 QIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNK 173
Score = 26.6 bits (57), Expect = 0.18
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
D+ + +E + K E K + E+++Q+ + ++++ K E E EQE K K
Sbjct: 122 DIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIE----LEQERQKTNK 173
Score = 23.5 bits (49), Expect = 1.5
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+QE +E + ++++ K E+E K+ + E +Q+R
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQER 168
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 33.1 bits (74), Expect = 0.002
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 31 EKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
E + +E KPK+EK+E K K+++E K K+ ++
Sbjct: 549 EAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVY 583
Score = 32.3 bits (72), Expect = 0.003
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 24 EPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
E E+ + K++K+E+K K+EKEE K K +E K SSY F
Sbjct: 551 ETLEEYKPKKEKKEKKEKKEKEEYKLK--KEKKVYDLSSYKF 590
Score = 29.6 bits (65), Expect = 0.021
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 14 PKLEPEK-QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
P LE E ++ +P+++K+EK++K+E++ + K+E K + K S +F
Sbjct: 546 PILEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELF 598
Score = 29.3 bits (64), Expect = 0.028
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 8/39 (20%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE 45
E LE+ +PK E +++K+EK++K+E K K+EK+
Sbjct: 551 ETLEEYKPKKE--------KKEKKEKKEKEEYKLKKEKK 581
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 32.0 bits (71), Expect = 0.004
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+++ + +PK +PE +K + + +K +K E+K E+++ + K E+ +QK+
Sbjct: 110 IEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKK 165
Score = 29.3 bits (64), Expect = 0.028
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 11 QARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
+A K+E ++K+ EE+K+EK+ EQK +Q+K E K ++E
Sbjct: 133 KALKKVEKVEEKKVVEEKKEEKK-VVEQKVEQKKIEEKKPVKKE 175
Score = 25.4 bits (54), Expect = 0.40
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
P K ++P+ + + K + +KP + + K E+ E KK
Sbjct: 106 PPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKK 145
Score = 23.1 bits (48), Expect = 2.0
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 3/54 (5%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEK---EESKSKEQEENK 56
K+ +E+ + + + +QK E ++ +++K K+E P Q +E QE NK
Sbjct: 144 KKVVEEKKEEKKVVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNK 197
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 31.6 bits (70), Expect = 0.006
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQE---PEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
+ D E E+ PK EPE+ ++ QEK DK QK +Q+ E+ + + E ++
Sbjct: 72 QGDFLEPKEE--PKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRL 129
Query: 59 KRS 61
K++
Sbjct: 130 KQN 132
Score = 29.3 bits (64), Expect = 0.028
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 20/62 (32%)
Query: 16 LEP-EKQKQEPEEQK----------QEKQDKQ----EQKPKQE-----KEESKSKEQEEN 55
LEP E+ K+EPEE QEK DK EQK +QE +E+ + K+ +EN
Sbjct: 76 LEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQEN 135
Query: 56 KK 57
++
Sbjct: 136 QE 137
Score = 27.3 bits (59), Expect = 0.11
Identities = 14/54 (25%), Positives = 32/54 (58%), Gaps = 3/54 (5%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
ND +E ++ K ++QK E EEQ++ ++ ++ ++ ++ +E K +Q N+
Sbjct: 98 NDFQEKTDKNAQK---DEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQ 148
Score = 25.4 bits (54), Expect = 0.40
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 18 PEKQKQEPEEQKQEKQD---KQEQKPKQEKEES 47
P ++K E E+ EKQ + +++PK+E EES
Sbjct: 57 PSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEES 89
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 30.8 bits (68), Expect = 0.010
Identities = 16/56 (28%), Positives = 32/56 (56%), Gaps = 2/56 (3%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQ--KPKQEKEESKSKEQEE 54
+E + K+ LEQA + K+E K+ K++ + + PK+ + E+K++ +EE
Sbjct: 460 LEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEE 515
Score = 24.6 bits (52), Expect = 0.68
Identities = 11/61 (18%), Positives = 33/61 (54%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+E+ + LE ++ + E + EE++++ ++ EQ + + ++ +ENK++ +
Sbjct: 436 IESTALKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENK 495
Query: 61 S 61
+
Sbjct: 496 T 496
Score = 21.9 bits (45), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDK 35
EN + E A PK + K E +E+K E K
Sbjct: 489 ENKEENKTEAAAPKENQTENKTEVKEEKIEVPTK 522
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 30.4 bits (67), Expect = 0.012
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
E++E +L ++Q+ + E + Q+KQ+ Q KPKQE +K + E K
Sbjct: 194 EEVEAEIERLLNKRQEADKERRAQKKQEDQ-AKPKQEVAPAKETPKTETPK 243
Score = 28.9 bits (63), Expect = 0.036
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
K+ +QA+PK E K+ P+ + + + + + PK E + + EENK
Sbjct: 218 KKQEDQAKPKQEVAPAKETPKTETPKTETR--KVPKAETKAKAKADTEENK 266
Score = 27.3 bits (59), Expect = 0.11
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E+ ++E K++ ++++ Q KQE + K ++E + +KE + + K
Sbjct: 194 EEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPK 243
Score = 26.6 bits (57), Expect = 0.18
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
DL+ A E + + E K+++ DK+ + K++++++K K++ K+
Sbjct: 185 DLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKE 235
Score = 25.0 bits (53), Expect = 0.52
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
N + ++E+ KL+ + E +E +E K+ K+E+K K +EE K K
Sbjct: 113 NGKENEIEEVVKKLQAITSQNL--EGAKETSGTKEAPEKEVKKENKEKAKEEVKANK 167
Score = 21.9 bits (45), Expect = 4.4
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 7 EDLEQARPKLEPEKQKQEPEE-QKQEKQD----KQEQKPKQEKEESKSKEQEENKKQKRS 61
E L R + + E++ Q+ +E Q + KQ+ K+ K + K E++ + E K + ++
Sbjct: 201 ERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVPKAETKAKAKA 260
Score = 21.9 bits (45), Expect = 4.4
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
EE + E + ++ + +KE K+QE+ K K+
Sbjct: 194 EEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQ 228
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 30.4 bits (67), Expect = 0.012
Identities = 15/46 (32%), Positives = 23/46 (49%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEES 47
E +E Q + E Q+Q +EQ ++QD QE P K+E+
Sbjct: 372 EQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQET 417
Score = 29.3 bits (64), Expect = 0.028
Identities = 12/56 (21%), Positives = 32/56 (56%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
+N V+ + Q + E Q+Q +EQ ++Q QEQ +++ + ++ ++++ ++
Sbjct: 352 DNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQE 407
Score = 27.7 bits (60), Expect = 0.081
Identities = 11/57 (19%), Positives = 31/57 (54%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
E+ + ++ + E Q+Q +EQ ++Q QEQ +++ + ++ +++ ++Q
Sbjct: 347 ESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQ 403
Score = 25.8 bits (55), Expect = 0.31
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKS 49
E +E Q + E Q+Q +EQ ++Q QEQ +++ + +
Sbjct: 362 EQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENA 409
Score = 25.0 bits (53), Expect = 0.52
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
E +E Q + E Q+Q +EQ ++Q QEQ ++ + +E
Sbjct: 367 EQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQE 416
Score = 23.9 bits (50), Expect = 1.2
Identities = 16/60 (26%), Positives = 32/60 (52%), Gaps = 5/60 (8%)
Query: 1 MENDVKEDLEQARPK-LEPEKQKQEPEEQ----KQEKQDKQEQKPKQEKEESKSKEQEEN 55
++N+ +D E + K +EP K+ E+ K ++Q+KQ + +EK ++ K+ N
Sbjct: 2098 LKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASN 2157
Score = 22.3 bits (46), Expect = 3.4
Identities = 13/51 (25%), Positives = 19/51 (36%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
ME EDL P L E ++Q D+Q + +E + E
Sbjct: 1 MERSSDEDLSHQDPSLFIESREQGGTRGVYRSSDQQAVSEESHRERDRIHE 51
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 30.4 bits (67), Expect = 0.012
Identities = 14/54 (25%), Positives = 33/54 (60%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+D E+ +E K+ E + Q+KQ +++ + Q K+E +S+++++ K+Q +
Sbjct: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMK 112
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 29.6 bits (65), Expect = 0.021
Identities = 15/54 (27%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
N +KE + P+ +K+K+ ++++ K++KQ+Q +QE E+ S + K
Sbjct: 233 NTLKETASK-EPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSEK 285
Score = 29.3 bits (64), Expect = 0.028
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 12 ARPKLEPEKQK---QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+ P L+P +E ++ E K+E+KPK+++ SK ++Q++ +Q+
Sbjct: 222 SNPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQE 272
Score = 25.4 bits (54), Expect = 0.40
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
E KE ++ + +P+K+++ +++KQ++ +QE + KQ + SKS++
Sbjct: 237 ETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFE-KQISDSSKSEK 285
Score = 24.3 bits (51), Expect = 0.89
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 17 EPE-KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
EPE K+E + +K+ + K+E++ + ++E + + + +K +K
Sbjct: 242 EPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSEK 285
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/42 (21%), Positives = 19/42 (44%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
+ P+ + ++ +E E S KE++ KK++ S
Sbjct: 219 QNSSNPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLS 260
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 29.6 bits (65), Expect = 0.021
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
K++ E+K K+ KQE K + +E + +ENK K
Sbjct: 2 KKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNK 39
Score = 28.9 bits (63), Expect = 0.036
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE----ESKSKEQEENKKQK 59
K+ E+ PK ++ K E ++ + K+ +E K + KE E+K+KE + + K
Sbjct: 3 KKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAK 60
Score = 26.6 bits (57), Expect = 0.18
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+K+ E + K+ KQ+ + + ++ K + +KE + NK ++
Sbjct: 2 KKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKE 42
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 29.3 bits (64), Expect = 0.028
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 11 QARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
++R K E EK+ E E ++EK +K EK E K K+QEE + R+
Sbjct: 149 ESRLKAENEKKLNEKLELEREK----IEKALHEKNELKFKQQEEQLEMLRN 195
Score = 26.9 bits (58), Expect = 0.14
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 2/52 (3%)
Query: 9 LEQARPKLEPEKQKQEPEEQKQEKQDKQEQ--KPKQEKEESKSKEQEENKKQ 58
LEQ + +K+ E +Q QE K+ + + K+E E++S+ + EN+K+
Sbjct: 108 LEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKK 159
Score = 24.3 bits (51), Expect = 0.89
Identities = 13/44 (29%), Positives = 23/44 (51%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
EK+ E Q Q EQK + KE +K ++ + ++ K++S
Sbjct: 44 EKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQAS 87
Score = 22.3 bits (46), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQ 33
N + E EQ R LE EK+ + +EKQ
Sbjct: 363 NAIIEGFEQLRADLESEKRAMARIWKSREKQ 393
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 15 KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
++E E Q + +QK +++ E++ + + +++EE K++
Sbjct: 27 QIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKER 71
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 29.3 bits (64), Expect = 0.028
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQ---EKEESKSKEQEENKKQKRSSYIFWGCII 70
E E + +E EEQ Q+ KQE K+ K+ + K + K+K + F C+I
Sbjct: 8 ELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVI 64
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 29.3 bits (64), Expect = 0.028
Identities = 12/42 (28%), Positives = 27/42 (63%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQ 42
+E K+DL ++ P +K+ +E+K+E+ + +E++PK+
Sbjct: 136 LEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKE 177
Score = 23.5 bits (49), Expect = 1.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 34 DKQEQKPKQEKEESKSKEQE 53
DK+E ++++EE +SKE+E
Sbjct: 155 DKKETSKEEKEEELESKEKE 174
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 29.3 bits (64), Expect = 0.028
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 24 EPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSY 63
E E K+E ++ +++PK+ KE S E+ KK+ Y
Sbjct: 19 EALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKY 58
Score = 25.8 bits (55), Expect = 0.31
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 7 EDLEQARPKLEP-EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSK 50
E+LE K E E K+EP+E K+ ++ K+E E K
Sbjct: 16 ENLEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGK 60
Score = 23.1 bits (48), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 23 QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
QE + D + + + KEE+K +EE K+ K +S
Sbjct: 3 QEELDALMSGGDLENLEALEAKEEAKEPTKEEPKESKENS 42
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 28.9 bits (63), Expect = 0.036
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS-YIFWGCIIGLCIVVIIAKIIAF 84
EEQKQE ++ K + E S Q K+SS + + ++G+ +++++ II
Sbjct: 112 EEQKQETSPEETAKKPLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQN 171
Query: 85 GGSSEEAK 92
S +E +
Sbjct: 172 SSSLKEER 179
Score = 27.7 bits (60), Expect = 0.081
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
+ +KE+ EQ R ++P+ + E ++ K E PK E+ K KEQ++ K+
Sbjct: 173 SSLKEEREQER-AIKPDTKNNSFNETNPTEEKKLEPTPKLEE---KHKEQDKQGKE 224
Score = 23.1 bits (48), Expect = 2.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEES 47
E++K EP + +EK +Q+++ K+ +E+
Sbjct: 201 EEKKLEPTPKLEEKHKEQDKQGKEAIKEN 229
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 28.5 bits (62), Expect = 0.047
Identities = 17/57 (29%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 2 ENDVKEDLEQARPKLEPEKQ-KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
E +E L+Q +P+K +Q+ EQK Q +QKP++ E+ S+++ ++K
Sbjct: 298 EQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSDQKPQKPLEQKISEQKPLDQK 354
Score = 26.6 bits (57), Expect = 0.18
Identities = 17/60 (28%), Positives = 33/60 (54%), Gaps = 6/60 (10%)
Query: 9 LEQARPKLEPEKQK---QEPE---EQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
+E +P +P QK Q+P+ EQK +Q EQKP++ ++ S ++ + +++ S
Sbjct: 264 IEFYKPDQKPLDQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKIS 323
Score = 25.4 bits (54), Expect = 0.40
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 6/48 (12%)
Query: 6 KEDLEQARPKLEPEKQK------QEPEEQKQEKQDKQEQKPKQEKEES 47
++ LEQ + +P QK Q+P EQK +Q +QKP+ +E+
Sbjct: 315 QKPLEQKISEQKPLDQKLSDQKPQKPLEQKISEQKPLDQKPQTPPKET 362
Score = 25.4 bits (54), Expect = 0.40
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 5/44 (11%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEK-EESKSKEQE--ENKKQK 59
E++ QEP +QK D++ QKP ++K E K +Q+ + K QK
Sbjct: 298 EQKPQEPLDQK--LSDQKPQKPLEQKISEQKPLDQKLSDQKPQK 339
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 28.5 bits (62), Expect = 0.047
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQ--KQEKQDKQEQKPKQEKEESKSKEQEENKK 57
EN K+ E +P + EK++ + E++ K E++ ++ ++ +E +E KE EE +K
Sbjct: 479 ENAAKK--EAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 534
Score = 26.6 bits (57), Expect = 0.18
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
KE+ + + + + K +Q E +Q ++ QE+ K+ +E K+ E NKK
Sbjct: 492 KEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEM--NKK 541
Score = 26.6 bits (57), Expect = 0.18
Identities = 9/42 (21%), Positives = 27/42 (63%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+K+ +P ++++++ K+E+K + ++ ++ EQ + Q+R
Sbjct: 483 KKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQER 524
Score = 26.2 bits (56), Expect = 0.23
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 10 EQARPKLEPE-KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
E A K P+ K+E K+EK+ + ++ +E E+ + QE ++K+
Sbjct: 479 ENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 528
Score = 25.0 bits (53), Expect = 0.52
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 8 DLEQARPKLEPEKQK----------------QEPEEQKQEKQDKQEQKPKQ-----EKEE 46
D +PKL P + QE + K+ KQ +E K K E+EE
Sbjct: 386 DYNDFKPKLYPHAAEFKTSQKGEKGNAPIYLQERHKAKENKQPLEENKVKPRNSGFEEEE 445
Query: 47 SKSKEQEENKKQKRS 61
K++ E K Q +
Sbjct: 446 VKTRRPEPTKDQNNA 460
Score = 24.3 bits (51), Expect = 0.89
Identities = 16/74 (21%), Positives = 35/74 (46%), Gaps = 16/74 (21%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQD--------------KQEQKPKQEKEESKSKE 51
+E+++ RP EP K + +Q + K + K+ KP ++E+ + KE
Sbjct: 443 EEEVKTRRP--EPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKE 500
Query: 52 QEENKKQKRSSYIF 65
+++ K ++ + F
Sbjct: 501 EKKKAKAEQRAREF 514
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 28.5 bits (62), Expect = 0.047
Identities = 15/49 (30%), Positives = 33/49 (66%), Gaps = 5/49 (10%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
++LE+ + LE K+K+ E+ ++ ++DK+E K+++E +K++ EN
Sbjct: 139 KELEEQKKALE--KEKEAKEQAQKAQKDKRE---KRKEERAKNRANLEN 182
Score = 28.5 bits (62), Expect = 0.047
Identities = 10/35 (28%), Positives = 25/35 (70%)
Query: 25 PEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
P+ ++ E+Q K +K K+ KE+++ ++++ +K+K
Sbjct: 136 PDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRK 170
Score = 26.9 bits (58), Expect = 0.14
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E E+QK+ E++K+ K+ Q QK +++K E K +EE K +
Sbjct: 140 ELEEQKKALEKEKEAKE--QAQKAQKDKRE---KRKEERAKNR 177
Score = 23.5 bits (49), Expect = 1.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 31 EKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+ ++ +EQK EKE+ ++ ++ +K KR
Sbjct: 137 DPKELEEQKKALEKEKEAKEQAQKAQKDKR 166
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 28.1 bits (61), Expect = 0.062
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
+ K++Q P++Q +E +QE P +E +E +++ Q+ S I
Sbjct: 473 DSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQETSMQI 520
Score = 23.9 bits (50), Expect = 1.2
Identities = 10/39 (25%), Positives = 16/39 (40%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
P+ P E + E + E PK E E++ N+
Sbjct: 105 PKTHPTAPHEAQHETHEANETNPKTPNETLSKNEKKPNE 143
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 28.1 bits (61), Expect = 0.062
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 17 EPEKQKQEPEEQKQE----KQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
EP+ + + E +KQE K+ +QE K K+ K + + +NK++K+ +
Sbjct: 21 EPDSKVEALEGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKET 70
Score = 28.1 bits (61), Expect = 0.062
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
D + PK+ P K K + + Q Q PK E++++ + E+NK+ SS
Sbjct: 84 DAKNPTPKITPPKIKGS--SKGVQNQGVQNNAPKPEEKDTTPQATEKNKETSPSS 136
Score = 25.8 bits (55), Expect = 0.31
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
E +KQE K+ +Q+ + ++ K ++ ++K + +E KK+ ++
Sbjct: 30 EGRKQESSLDKKIRQELKSKELKNKELKNKDLKNKEEKKETKA 72
Score = 25.4 bits (54), Expect = 0.40
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQ 52
+Q+ + +E K ++ ++ K K+EK+E+K+K +
Sbjct: 43 RQELKSKELKNKELKNKDLKNKEEKKETKAKRK 75
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.1 bits (61), Expect = 0.062
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
E+ KL EK+KQE E K + +D + QK K + E++ K++ K
Sbjct: 300 EEREKKLLAEKEKQETELAKYKLKDLENQK-KLKALEAELKKKNTKK 345
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 27.7 bits (60), Expect = 0.081
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+ KE E P L+P K E + QEK+ K+ + +E+ +KE +EN+ ++
Sbjct: 489 ETKEVKEFKFPPLKP-KLTTETTAEMQEKETKEAVGKALQTKENDTKEVQENETKE 543
Score = 24.3 bits (51), Expect = 0.89
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 20 KQKQEPEEQKQEKQDK-QEQKPKQEKEESKSKEQEENKK 57
+ K PEE K+ K+ K KPK E + +++E K+
Sbjct: 482 ENKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKE 520
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 27.7 bits (60), Expect = 0.081
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 10 EQARPKLEPEKQKQEPEEQ--KQEKQDKQEQKPKQEKEESKSKEQEENKK 57
E +P + EK++ + E++ K E++ ++ ++ +E +E KE EE +K
Sbjct: 394 EAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 443
Score = 26.6 bits (57), Expect = 0.18
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 4/44 (9%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKP--KQE--KEESKSKEQEEN 55
++ EK+K+ E+K+E+ D +E K KQE KE K+ + EN
Sbjct: 237 VKKEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTEN 280
Score = 26.6 bits (57), Expect = 0.18
Identities = 9/42 (21%), Positives = 27/42 (63%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+K+ +P ++++++ K+E+K + ++ ++ EQ + Q+R
Sbjct: 392 KKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQER 433
Score = 26.6 bits (57), Expect = 0.18
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
KE+ + + + + K +Q E +Q ++ QE+ K+ +E K+ E NKK
Sbjct: 401 KEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEM--NKK 450
Score = 26.2 bits (56), Expect = 0.23
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 10 EQARPKLEPE-KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
E A K P+ K+E K+EK+ + ++ +E E+ + QE ++K+
Sbjct: 388 ESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 437
Score = 25.0 bits (53), Expect = 0.52
Identities = 13/56 (23%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 KEDLEQARPKLEP-EKQKQEPEEQKQEKQDKQEQK-PKQEKEESKSKEQEENKKQK 59
+++ ++A K + E++++ +E+K+ K K+ + ++EKE + E+E +++K
Sbjct: 286 EKNYQKAERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRK 341
Score = 24.3 bits (51), Expect = 0.89
Identities = 7/44 (15%), Positives = 28/44 (62%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
E++ EE+++ + ++++ K ++ E + +E+E +++ ++ +
Sbjct: 293 ERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKET 336
Score = 24.3 bits (51), Expect = 0.89
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
ME + +E R + E E++++ E K ++ ++ ++ +ES ++ EN
Sbjct: 319 MEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEPSSEN 373
Score = 23.9 bits (50), Expect = 1.2
Identities = 14/59 (23%), Positives = 34/59 (56%), Gaps = 6/59 (10%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQ-----EKEESKSKEQEENKK 57
D ++ + + +E E++++E +E + EK+ ++ +K + EK +K E+E N++
Sbjct: 307 DERKKTKATKKAMEFEEREKEHDE-RDEKETEERRKALEMDKGNEKVNAKENEREINQE 364
Score = 23.5 bits (49), Expect = 1.5
Identities = 10/46 (21%), Positives = 23/46 (49%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
K + K+ K+ KP ++E+ + KE+++ K ++ + F
Sbjct: 378 KDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREF 423
Score = 23.5 bits (49), Expect = 1.5
Identities = 13/49 (26%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
Query: 15 KLEPEKQKQEPEEQKQE-KQD--KQEQKPKQEKEESKSKEQEENKKQKR 60
++E ++++ + E K+E KQ+ K+ +K Q E + + E++ +K +R
Sbjct: 246 RIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAER 294
Score = 21.9 bits (45), Expect = 4.4
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
EN+ + + E A EP + + + +E K+E + SKE++ K+++
Sbjct: 356 ENEREINQESAN---EPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEK 411
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 27.3 bits (59), Expect = 0.11
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEK----QDKQEQKPKQEKEESKSKE--QEEN 55
E D K +E +L + K E +KQ K Q K++ K +Q++ + KE +EE
Sbjct: 27 ETDRKAHMEPKWRELADIRSKMFAESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEF 86
Query: 56 KKQKRSSYIFWG 67
+ Q+ I++G
Sbjct: 87 QVQRELLEIYYG 98
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 27.3 bits (59), Expect = 0.11
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 33 QDKQEQKPKQEKEESKSKEQEENKK 57
Q +E +PK+ +EES+ + QEE+++
Sbjct: 241 QPPKESQPKESQEESQEESQEESQE 265
Score = 23.9 bits (50), Expect = 1.2
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 19 EKQKQEPEE-QKQEKQDKQEQKPKQEKEES 47
E Q P+E Q +E Q++ +++ ++E +ES
Sbjct: 237 ESNAQPPKESQPKESQEESQEESQEESQES 266
Score = 23.1 bits (48), Expect = 2.0
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQ 38
+P K+ Q E Q++ +++ QE+
Sbjct: 241 QPPKESQPKESQEESQEESQEE 262
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 27.3 bits (59), Expect = 0.11
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKP---KQEKEESKSKEQEENKK 57
+KED Q P+ P+K+ E +++E Q+ P K+ KE ENK+
Sbjct: 311 IKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKE 366
Score = 21.9 bits (45), Expect = 4.4
Identities = 15/52 (28%), Positives = 21/52 (39%), Gaps = 1/52 (1%)
Query: 5 VKEDLEQARPKLEPE-KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
+KE +Q P K+E E K+E +EKE K +EN
Sbjct: 154 LKEIYKQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEKENLKENPIDEN 205
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 27.3 bits (59), Expect = 0.11
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
Query: 1 MENDVKEDLEQARPKL---EPEKQKQEPEEQKQEKQDKQEQKPK---QEKEESKSKEQEE 54
ME E+ ++++ +L EP + E Q K++ +KPK ++KE K K +
Sbjct: 115 MEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHA 174
Query: 55 NKKQK 59
K+ K
Sbjct: 175 AKEPK 179
Score = 26.9 bits (58), Expect = 0.14
Identities = 14/58 (24%), Positives = 29/58 (49%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
++D E L PK E + K +KQE ++ + Q + E K+ E+++ +++
Sbjct: 72 KDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKE 129
Score = 26.6 bits (57), Expect = 0.18
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
EN + +QA+ +++ ++KQE QK+ K + Q++ ++ +K++ +KK K
Sbjct: 103 ENSMPIQTDQAQMEMKTTEEKQE--SQKELKAVEPIPMSTQKESQAVAKKETPHKKPK 158
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
KE A+ + +K K P++++ K DK + K+ K + +++++ K +++
Sbjct: 142 KESQAVAKKETPHKKPKVAPKDKEAHK-DKAKHAAKEPKVKKEARKEVSKKANSKTN 197
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 26.9 bits (58), Expect = 0.14
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 2 ENDVKEDLEQAR-PKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+ D K+DL A PK +K + P+++ + K + KPK+ KE+ K KK++
Sbjct: 71 KQDNKDDLNTAATPKPLAKKASKTPKKE----ETKAQPKPKKTKEKKKEAPAPIIKKKE 125
Score = 26.6 bits (57), Expect = 0.18
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E+ K+E Q+K +Q+ K+ K+ SK K K K
Sbjct: 249 EDIKKEWQEKDKQETKKTKKPSKPKATPTAKNNK 282
Score = 25.4 bits (54), Expect = 0.40
Identities = 11/62 (17%), Positives = 31/62 (49%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
EN+ + + +++ + E +++ +++DKQE K ++ + K+ +N K +
Sbjct: 227 ENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATPTAKNNKSHKI 286
Query: 62 SY 63
+
Sbjct: 287 DF 288
Score = 23.9 bits (50), Expect = 1.2
Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQD---KQEQKPKQEKEESKSKEQEENKKQKRS 61
+KE ++ +P P++ ++ + K + PK+E+ +++ K ++ +K+K +
Sbjct: 57 IKEQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEETKAQPKPKKTKEKKKEA 116
Score = 21.9 bits (45), Expect = 4.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
E+ K +P+ +K +++ K+ P +K+E + EN+
Sbjct: 98 EETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQ 135
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 26.9 bits (58), Expect = 0.14
Identities = 15/51 (29%), Positives = 24/51 (46%)
Query: 9 LEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
L + +L EK+ E+ + +KQ + + KQ E K+ EN K K
Sbjct: 119 LTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLK 169
Score = 26.2 bits (56), Expect = 0.23
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
K +L + L EK++ E++ K+ + QK Q E SK+ EN+K
Sbjct: 109 KTELTEKNKVLTTEKERLATEKENLTKEKTESQK--QVNELKNSKQVLENEK 158
Score = 24.6 bits (52), Expect = 0.68
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 10/64 (15%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESK----------SKEQEEN 55
KE LE+ L +K+ E+ + +KQ + + KQ E K +K++E
Sbjct: 46 KERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENL 105
Query: 56 KKQK 59
K+K
Sbjct: 106 TKEK 109
Score = 23.1 bits (48), Expect = 2.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
KE+L + R L EK E ++ K E++ ++E+ +KE+ E++KQ
Sbjct: 95 KENLTKDRENLTKEKT----ELTEKNKVLTTEKERLATEKENLTKEKTESQKQ 143
Score = 22.3 bits (46), Expect = 3.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 8 DLEQARPKLEPEKQKQEPEEQ-----KQEKQDKQEQKPKQEKEESKSKEQEENKK 57
+L + L EK++ E E + K+ ++ + KQ E SK+ EN+K
Sbjct: 34 ELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEK 88
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 26.6 bits (57), Expect = 0.18
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
E D+K LEQ KL+ + + ++ ++ ++++E PK ++ + K ++ K
Sbjct: 387 EADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEVTPKMINDDIQLKTAIDSLK 442
Score = 20.8 bits (42), Expect = 9.8
Identities = 10/51 (19%), Positives = 24/51 (46%)
Query: 14 PKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
P PE + + ++ K +++ K + + SKE +++KK + +
Sbjct: 373 PGKVPENENKFSLKEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEV 423
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 26.6 bits (57), Expect = 0.18
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
+ Q E + EK+ +++K + EKE +++ EN K++R+
Sbjct: 97 EAQHKEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRA 137
Score = 24.3 bits (51), Expect = 0.89
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQ 33
D K LE+ + +LE E+Q E E + +KQ
Sbjct: 106 DEKRYLEKEKKELEKERQILEQERENFKKQ 135
Score = 23.5 bits (49), Expect = 1.5
Identities = 14/65 (21%), Positives = 34/65 (51%), Gaps = 3/65 (4%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQ---EQKPKQEKEESKSKEQEENKKQ 58
E +++ E +L+ K+E + E Q K+ ++K EKE+ + +++ + +Q
Sbjct: 68 ECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQ 127
Query: 59 KRSSY 63
+R ++
Sbjct: 128 ERENF 132
Score = 21.9 bits (45), Expect = 4.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQ 42
EK+K+E E+++Q + ++E KQ
Sbjct: 112 EKEKKELEKERQILEQERENFKKQ 135
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.6 bits (57), Expect = 0.18
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQE--KQDKQEQKPKQEKEESKSKEQEENKKQK 59
E+ D P + P E K + K E KP++ ++S +E + K+K
Sbjct: 169 ESTESSDNHLDNPTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQEIIKGSKKK 228
Query: 60 RSSYIFWGCIIGLCIVVI-IAKII 82
YI G ++ + IV+I ++ I
Sbjct: 229 ---YIIGGIVVAVLIVIILFSRSI 249
Score = 22.7 bits (47), Expect = 2.6
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 1 MENDVKEDLE---QARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEES 47
+E +VK+ ++ + EK+KQE E+ + K +K +Q+K+++
Sbjct: 1233 LEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKA 1282
Score = 21.2 bits (43), Expect = 7.5
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 15 KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
K + +K+K + + + + + K E ++ S+ +NKK+K ++
Sbjct: 1499 KKDDDKEKGKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFV 1548
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.2 bits (56), Expect = 0.23
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
EN+ + E +R K+E E K+E E K+ +Q + + K K K+++E
Sbjct: 460 ENEKEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKE 512
Score = 21.6 bits (44), Expect = 5.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
K + E E K + Q+ + EK+ + + +E N K+
Sbjct: 399 KMQMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKR 437
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 26.2 bits (56), Expect = 0.23
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQE--KEESKSKEQEENKKQ 58
M+++ ++ + PK EPE ++ ++Q+ ++KQE K+ KE+ + K QE ++
Sbjct: 1 MKDEHNQEHDHLSPK-EPESYQKAYACKEQQGEEKQEASEKEGEIKEDFELKYQEMREQY 59
Query: 59 KR 60
R
Sbjct: 60 LR 61
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 25.8 bits (55), Expect = 0.31
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 14 PKLEPE--KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
PK+ E K+K + +K K ++ +E+ ++K+KEQ++ +++K
Sbjct: 12 PKILEERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREK 59
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 25.8 bits (55), Expect = 0.31
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 1 MENDVK--EDLEQARPKLEPEKQK---QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
+EN +K DLE + + E +K Q E ++ EKQ + + Q + + +E +E+
Sbjct: 41 LENMLKIAHDLENLEQETQYEMRKINEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEH 100
Query: 56 KKQKRSSY 63
+++ + Y
Sbjct: 101 EREAKRRY 108
Score = 23.5 bits (49), Expect = 1.5
Identities = 13/49 (26%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
+ E LE+A+ EKQ + Q + D+ ++ K+ + E+K + E
Sbjct: 65 INEQLEEAK---RLEKQVDMQDRHSQSEIDRLMREAKEHEREAKRRYGE 110
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 25.4 bits (54), Expect = 0.40
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 10 EQARPKLEPEKQ---KQEPEEQKQEKQDKQEQKPKQE--KEESKSKEQEENKKQK 59
E++ K P+K+ K+ P+++ +K+ +++ PK+E K+E KE E K +
Sbjct: 173 ERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQ 227
Score = 23.1 bits (48), Expect = 2.0
Identities = 11/45 (24%), Positives = 27/45 (59%)
Query: 14 PKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
P E +K+ P+++ +K+ +++ PK+E + + ++E KK+
Sbjct: 170 PLNERSAKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKE 214
Score = 23.1 bits (48), Expect = 2.0
Identities = 16/46 (34%), Positives = 30/46 (64%), Gaps = 2/46 (4%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE-ESKSK 50
KE ++ PK E K K+ P+++ +K+ +++ PK+E E ESK++
Sbjct: 183 KEIPKKEIPKKEIPK-KEIPKKEIPKKEIPKKEIPKKEAENESKNQ 227
Score = 22.3 bits (46), Expect = 3.4
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 9 LEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
L+ PK P+ K+E ++ K++ K +S ++E KK+
Sbjct: 135 LKHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKE 184
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 25.4 bits (54), Expect = 0.40
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1 MENDVKE--DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
+EN +KE DL+ A LE EKQK+ +K E + +Q K E SK+ K+
Sbjct: 537 LENALKEQEDLKNAW-LLEMEKQKEIFHHKKLELEKSYQQALNILKSEVASKDTSSMHKE 595
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 25.0 bits (53), Expect = 0.52
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQD 34
DLE AR P+ + ++PE+QK++ ++
Sbjct: 1106 DLESAREVKIPKARYKDPEKQKEDVRE 1132
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 25.0 bits (53), Expect = 0.52
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 12 ARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEE 46
A+ E + ++ ++Q+Q+ +Q+QK +Q+ ++
Sbjct: 42 AQQHAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQQ 76
Score = 25.0 bits (53), Expect = 0.52
Identities = 7/33 (21%), Positives = 22/33 (66%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
+Q E+Q ++ +Q+Q+ ++++ K+++Q +
Sbjct: 43 QQHAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQ 75
Score = 24.6 bits (52), Expect = 0.68
Identities = 9/37 (24%), Positives = 23/37 (61%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQK 39
++ ++ EQ + ++Q+Q+ +Q+Q+K +Q Q+
Sbjct: 40 HNAQQHAEQQAEQHAQQQQQQQAHQQQQQKAQQQNQQ 76
Score = 24.3 bits (51), Expect = 0.89
Identities = 8/30 (26%), Positives = 21/30 (69%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESK 48
E+Q ++ +Q+Q++Q Q+Q+ K +++ +
Sbjct: 47 EQQAEQHAQQQQQQQAHQQQQQKAQQQNQQ 76
Score = 23.9 bits (50), Expect = 1.2
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 23 QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
Q+ EQ+ E+ +Q+Q+ +Q ++ + K Q++N++
Sbjct: 43 QQHAEQQAEQHAQQQQQ-QQAHQQQQQKAQQQNQQ 76
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/34 (20%), Positives = 17/34 (49%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E Q EQ+ +Q ++ + ++ + ++QK
Sbjct: 36 EHHHHNAQQHAEQQAEQHAQQQQQQQAHQQQQQK 69
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.0 bits (53), Expect = 0.52
Identities = 12/58 (20%), Positives = 31/58 (52%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
++ +K + ++ KL+ E K+ E + + + Q++ + KE S++ + + NK +
Sbjct: 332 LDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNE 389
Score = 21.9 bits (45), Expect = 4.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 15 KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESK 48
K+E +K+ E +K+ K + Q Q+KE+ +
Sbjct: 122 KIESKKESINKENEKKIKNEASLQVLTQKKEKEE 155
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 25.0 bits (53), Expect = 0.52
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEP---EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
EN KE++ + E K P EE++ + + +E+ +K + KS +E +KK
Sbjct: 27 ENITKENMTETNTT-EENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKK- 84
Query: 59 KRSSYIFWG 67
KR Y+ G
Sbjct: 85 KRQLYMLKG 93
Score = 21.6 bits (44), Expect = 5.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKS 49
EN+V + +++ E K+K++ K E +K E Q+ ++KS
Sbjct: 65 ENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKS 112
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 25.0 bits (53), Expect = 0.52
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 4 DVKEDLEQARPK------LEPEKQKQEPEEQ----KQEKQDKQEQKPKQEKEESKSKEQE 53
++KEDL Q K L+ E + E+ K+EK+ ++ K KEE+ Q
Sbjct: 36 ELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQT 95
Query: 54 ENKKQKRS 61
E KK+ ++
Sbjct: 96 EEKKRLKN 103
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 24.6 bits (52), Expect = 0.68
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
E +++DL Q + E + +KQ++Q+++ Q E + + EQE
Sbjct: 503 EKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQE 554
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 24.6 bits (52), Expect = 0.68
Identities = 11/45 (24%), Positives = 23/45 (50%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKS 49
V E + + + K+ P+++++ ++DK EQ KE K+
Sbjct: 211 VDEAIFKEKIKIFGSDDASNPDDEEELQKDKTEQSSNDPKEAQKT 255
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 24.6 bits (52), Expect = 0.68
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEK 32
++LE+A+ LE EKQK++ +K+E+
Sbjct: 98 QELEKAKIILEKEKQKEKEILEKKEQ 123
Score = 21.9 bits (45), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 33 QDKQEQKPKQEKEESKSKEQEENKKQ 58
Q+ ++ K EKE+ K KE E K+Q
Sbjct: 98 QELEKAKIILEKEKQKEKEILEKKEQ 123
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 24.3 bits (51), Expect = 0.89
Identities = 15/56 (26%), Positives = 28/56 (49%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
N+ ++ L R LEPE++ + E + E + K K+E + +E+N K+
Sbjct: 59 NNPEQLLALIRSFLEPEEELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKE 114
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 24.3 bits (51), Expect = 0.89
Identities = 15/56 (26%), Positives = 32/56 (56%), Gaps = 1/56 (1%)
Query: 1 MENDVKEDLEQARPKLEP-EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
+++ V +D E K+E EK ++ + +K EK ++ + ++KE+ K+ +EN
Sbjct: 494 LQDMVLQDTEPLFSKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEKAPPTQEN 549
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 24.3 bits (51), Expect = 0.89
Identities = 15/56 (26%), Positives = 26/56 (45%), Gaps = 5/56 (8%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSY-----IFW 66
LE KQ + K E K+E++ ++ K+E + K+ + R S +FW
Sbjct: 120 LEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFW 175
Score = 23.1 bits (48), Expect = 2.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
+K P E + +KQ+ + K+E+ K++ E ++ K+ I
Sbjct: 110 EKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEI 153
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.9 bits (50), Expect = 1.2
Identities = 13/47 (27%), Positives = 25/47 (52%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
+KE L+Q + +L +KQ+ E Q +K + + K+E + K+
Sbjct: 228 LKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKKQ 274
Score = 21.6 bits (44), Expect = 5.8
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 19 EKQKQEPEEQKQEKQDKQ----EQKPKQEKEESKSKEQEENKKQ 58
+K+ + QK E+ +K+ EQ + +KE K+++E+ Q
Sbjct: 208 QKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQ 251
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 23.9 bits (50), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 69 IIGLCIVVIIAKIIAFGGSSEEAKADKPKN 98
I+GL ++ A I+ FG S E AK + K+
Sbjct: 79 ILGLTEMLEKAGILVFGASKEAAKLEASKS 108
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.9 bits (50), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 29 KQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
K+E DK E K K+ SKS ++ +N K K
Sbjct: 684 KRELSDKLENINKDLKDFSKSFDEFKNGKNK 714
Score = 22.3 bits (46), Expect = 3.4
Identities = 13/49 (26%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Query: 20 KQKQEPEEQ---KQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
KQ Q+ E+ K+E+ +K K + K +K+K + +++ + IF
Sbjct: 612 KQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIF 660
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 23.9 bits (50), Expect = 1.2
Identities = 17/64 (26%), Positives = 32/64 (49%), Gaps = 8/64 (12%)
Query: 4 DVKEDLEQAR-------PKLEPEKQKQEPEEQKQEKQD-KQEQKPKQEKEESKSKEQEEN 55
D K+ LEQA P+ E K+ +++E+Q K + K +K + +++ N
Sbjct: 28 DNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRN 87
Query: 56 KKQK 59
K++K
Sbjct: 88 KRKK 91
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 23.5 bits (49), Expect = 1.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 15 KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSS 62
K+E K+ + ++Q++ K + ESK +++ENK++K ++
Sbjct: 229 KVELLKKLAQKKDQEEFLSRWSALHQKCSENESKFPKRKENKREKNAT 276
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 23.1 bits (48), Expect = 2.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 27 EQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
E ++E+ ++K ++KEQE+ +K+K +F
Sbjct: 59 EHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKHWYELF 97
Score = 21.6 bits (44), Expect = 5.8
Identities = 12/55 (21%), Positives = 30/55 (53%), Gaps = 1/55 (1%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
++ + L + + +E ++Q+Q+ + + + K++ KPK E +Q+EN+
Sbjct: 65 DSSLNTALPEDKTAIEAKEQEQKEKRKHWYELFKKKPKPKSSMGEFVF-DQKENR 118
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 23.1 bits (48), Expect = 2.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
K P E K + + ++K +EKEE+K EE
Sbjct: 52 KNANTPLEPKNAAKIETQEKITEEKEEAKEIITEE 86
>ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 22.7 bits (47), Expect = 2.6
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 45 EESKSKEQEENKKQKRSSYIFWGCII 70
+ESK +QE+N + + + FW C I
Sbjct: 34 QESKM-QQEQNTFEFKGYFDFWNCAI 58
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 22.7 bits (47), Expect = 2.6
Identities = 11/54 (20%), Positives = 25/54 (45%), Gaps = 2/54 (3%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESK--SKEQEENKK 57
+E+ ++ E +E + K+ KPK ++++ +KE+ +N K
Sbjct: 40 RENAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDNNK 93
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 22.7 bits (47), Expect = 2.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 16 LEPEKQKQEPEEQKQEKQD 34
++PEK KQE E ++E++D
Sbjct: 24 IKPEKIKQELERIEKEQED 42
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 22.3 bits (46), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKE------ESKSKEQEEN 55
E+ K +E K K K+++ PK E+E + K +E+ +N
Sbjct: 597 EELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRERAKN 639
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 22.3 bits (46), Expect = 3.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 61 SSYIFWGCIIGLCIVVIIAKIIAF 84
+SYI I+G ++++ +I F
Sbjct: 285 NSYIAHSSIVGFLTIIVLGSVICF 308
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 22.3 bits (46), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Query: 5 VKEDLEQARPKLEPEKQ-----KQEPEEQKQEKQDKQEQKPKQEKEE 46
++ +L+Q + L +K KQE ++K EK++ + K Q EE
Sbjct: 22 IRLELKQVQEILRKKKSVLKGLKQEICQKKLEKENFRSNKETQNTEE 68
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 22.3 bits (46), Expect = 3.4
Identities = 18/59 (30%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
Query: 6 KEDLEQARP---KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
KED +A K+E K+ Q + + E+ K+EKEE+ EE K S
Sbjct: 135 KEDYAKAMVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEETTKSATEETKTHDAS 193
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 22.3 bits (46), Expect = 3.4
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 41 KQEKEESKSKEQEENKKQKRSSYIFW----GCIIGLCIVVIIAKIIAFGG 86
K+E EE+K + ++ QK W G V++ +A G
Sbjct: 71 KEENEENKINQANDSYAQKSPFQKLWILFGGAFFNFLFAVLVYFFLALSG 120
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 21.9 bits (45), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
++ ++P K EK +K E EE+KS E
Sbjct: 107 DRANKKPSHAK-EKHEKTEHTHSHHAEEAKSTE 138
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 21.9 bits (45), Expect = 4.4
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQ------EKEESKSKE 51
++ +KE E+A L+ + K E QE+K ++ +K+ SK KE
Sbjct: 152 IQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKDLSKQKE 208
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 4.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 31 EKQDKQEQKPKQEKEESKSKEQ 52
E + K+E+K +++ E +K KE+
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEK 44
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/21 (33%), Positives = 16/21 (75%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQ 42
K+E +E+K+ +++K ++K Q
Sbjct: 27 KEEEKEEKKTERNKDKEKNAQ 47
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 21.9 bits (45), Expect = 4.4
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 19 EKQKQEPEEQKQEKQDKQEQK 39
E +KQE E + +E++ +EQK
Sbjct: 413 ESEKQEIENKIEERKRAKEQK 433
>ref|NP_223392.1| PHOSPHATIDYLGLYCEROPHOSPHATASE A [Helicobacter pylori J99]
Length = 158
Score = 21.9 bits (45), Expect = 4.4
Identities = 10/35 (28%), Positives = 20/35 (56%)
Query: 51 EQEENKKQKRSSYIFWGCIIGLCIVVIIAKIIAFG 85
++EE K+ SSYI ++G+ + + I+ + G
Sbjct: 63 KEEEETKRHDSSYIVIDELVGMWLAMAISGLSLVG 97
>ref|NP_223378.1| ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSPORTER [Helicobacter
pylori J99]
Length = 443
Score = 21.9 bits (45), Expect = 4.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 50 KEQEENKKQKRSSYIFWGCIIGL 72
KE+E +K K S +IF G ++ +
Sbjct: 218 KEKETSKSAKLSLWIFIGGVVAI 240
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 4.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 21 QKQEPEEQKQEKQ--DKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
+K +P + + E DK+ +P Q + K+KE + K R I
Sbjct: 155 EKFDPTKTEDEIPLCDKKRPRPHQTEAIEKTKEYFSDPKNARGKLI 200
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.6 bits (44), Expect = 5.8
Identities = 10/44 (22%), Positives = 23/44 (51%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
+K P+E K+E + E++ E ++ EE +K + + ++
Sbjct: 13 KKYNPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFL 56
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 21.6 bits (44), Expect = 5.8
Identities = 20/61 (32%), Positives = 26/61 (41%), Gaps = 12/61 (19%)
Query: 3 NDVKEDLEQA-----RPKLEPEKQKQEP------EEQKQ-EKQDKQEQKPKQEKEESKSK 50
N LEQA P P++ +EP E KQ EK +K + K K K+K
Sbjct: 109 NPTLNPLEQAPTNPLMPTQTPKELPKEPAKTPFVESPKQNEKNEKNDAKENGIKGVEKNK 168
Query: 51 E 51
E
Sbjct: 169 E 169
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 21.6 bits (44), Expect = 5.8
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 41 KQEKEESKSKEQEENKKQKRSS 62
KQE+ K +EN K K S+
Sbjct: 144 KQEESHHKEDSNDENHKDKLSN 165
Score = 21.6 bits (44), Expect = 5.8
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 16 LEPEKQKQEPEEQKQEKQD-KQEQKPKQEKEESKSKEQEENKKQKRSS 62
++ ++Q +E + + ++D K +K EE SK+QEE+ ++ S+
Sbjct: 108 IQRKRQIRENLKNRSNRKDAKNFEKLSNIAEEIISKKQEESHHKEDSN 155
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 21.2 bits (43), Expect = 7.5
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
E + LE + QE E ++ E +EKEE ++ Q+E
Sbjct: 214 EMSEAILEGRELMQEEIVHADENSEEIEFVSNEEKEEMLAEIQKE 258
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 21.2 bits (43), Expect = 7.5
Identities = 8/35 (22%), Positives = 20/35 (56%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKP 40
K +E+A+ + E ++ E+ ++ +K++ KP
Sbjct: 256 KSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKP 290
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 21.2 bits (43), Expect = 7.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE 45
+E E+L Q + ++ Q E+K +KQ K+ P+ E E
Sbjct: 176 LEASAIENLLQTKSEIITPLAFQRSLEKKAKKQIKKVVLPESEDE 220
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 21.2 bits (43), Expect = 7.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
++QE E K+ K+ ++ +K + SK ++ +QK+
Sbjct: 251 KQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQ 290
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
++Q+ E ++ +EK++ ++ + SK+K+ +KQ
Sbjct: 251 KQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQ 290
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 21.2 bits (43), Expect = 7.5
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 29 KQEKQDKQEQKPKQEKEE 46
++ K+ K+E PK+E EE
Sbjct: 15 EEVKEKKRESVPKEELEE 32
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 21.2 bits (43), Expect = 7.5
Identities = 17/59 (28%), Positives = 26/59 (43%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIFWGCIIGLCIVVI 77
E KQE + KQ+ D K + + +EQ + +K + +F G II VI
Sbjct: 234 EPNKQEFLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVI 292
>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 351
Score = 21.2 bits (43), Expect = 7.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
LE + +E E K +++ K Q ++ +SK+ + +S YI
Sbjct: 214 LEFVRNSKELSEHSSPKNNEKLIKIMQTLKDGQSKDDLPESLRPKSGYI 262
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.2 bits (43), Expect = 7.5
Identities = 12/36 (33%), Positives = 17/36 (46%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
K+ P ++ EK DK + KP EQ +N K
Sbjct: 453 KEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLK 488
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 20.8 bits (42), Expect = 9.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKE 51
D+KE ++ + P+K KQ E + E+K +EE K E
Sbjct: 200 DLKELVKNIKSDFIPKKAKQSIEVSVSCDDSEFEKKVLFLQEEIKKGE 247
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQ 36
ND+ E ++ R LEP+ + +E ++ Q +
Sbjct: 68 NDLHEKIKHLRLILEPKPKDKENNPNLKDHQGSE 101
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 20.8 bits (42), Expect = 9.8
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
+ K+ E QK+ +K +K + + SK EE K+Q
Sbjct: 111 RTKKVLEFQKKHPLEKPLKKAPKHSFLATSKALEETKRQ 149
>ref|NP_223139.1| putative [Helicobacter pylori J99]
Length = 162
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/18 (38%), Positives = 14/18 (76%)
Query: 31 EKQDKQEQKPKQEKEESK 48
+K++ Q+PK+++ ESK
Sbjct: 120 QKEEPIAQEPKKDERESK 137
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.305 0.127 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,855
Number of Sequences: 1491
Number of extensions: 6315
Number of successful extensions: 454
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of query: 111
length of database: 494,079
effective HSP length: 66
effective length of query: 45
effective length of database: 395,673
effective search space: 17805285
effective search space used: 17805285
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 42 (20.8 bits)