BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644974|ref|NP_207144.1| hypothetical protein
[Helicobacter pylori 26695]
(260 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223614.1| putative [Helicobacter pylori J99] 29 0.14
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.54
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.71
ref|NP_224077.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 25 1.6
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 25 2.7
ref|NP_224093.1| putative [Helicobacter pylori J99] 25 2.7
ref|NP_223988.1| putative [Helicobacter pylori J99] 25 2.7
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 25 2.7
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 24 3.5
ref|NP_222839.1| putative [Helicobacter pylori J99] 24 3.5
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 24 3.5
ref|NP_223773.1| putative [Helicobacter pylori J99] 24 4.6
ref|NP_222867.1| putative [Helicobacter pylori J99] 24 4.6
ref|NP_223721.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223651.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223620.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 23 6.0
ref|NP_222865.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 7.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 7.8
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 23 7.8
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 23 7.8
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 7.8
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 23 7.8
ref|NP_222827.1| putative [Helicobacter pylori J99] 23 7.8
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 28.9 bits (63), Expect = 0.14
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 191 FKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVE 236
+ E L + E+KE N+Y++ ND ++ + + KN P E
Sbjct: 93 YSLENLQTLRELKEEADNNYQESLNDEKLQNNLREWRDLKNTPEEE 138
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 26.9 bits (58), Expect = 0.54
Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 6/85 (7%)
Query: 38 LQEKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGD 97
L + LLG Y+ + + K+ G E + + L G+D + Q+ I D
Sbjct: 133 LDDDLLGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLLLGIDENTRQDKSIYDPTCG 192
Query: 98 EVARKLKANFTGAIGATAGVSGLAI 122
+ LKA+ + AG GL I
Sbjct: 193 SGSLLLKAS------SLAGKKGLTI 211
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 26.6 bits (57), Expect = 0.71
Identities = 14/39 (35%), Positives = 24/39 (60%)
Query: 179 FNYIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFNDS 217
F I E ++R D KK++L+ + E K+ L S +F+D+
Sbjct: 307 FQGIGEKIYRADSKKDLLSVLFENKKFLVGSLVHKFDDN 345
>ref|NP_224077.1| putative [Helicobacter pylori J99]
Length = 377
Score = 25.4 bits (54), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 38 LQEKLLGKDYKQRLDAITKKLSKTYGSLLN 67
L+ K GK Y+ + + K L +TY + LN
Sbjct: 104 LESKKAGKKYELMITKLGKSLVETYNTFLN 133
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 25.4 bits (54), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 5/39 (12%)
Query: 178 AFNYIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFND 216
A N + + + D+K NINE+ +N NS Q FN+
Sbjct: 1719 ALNQLTKLITPSDWK-----NINELIDNANNSVVQNFNN 1752
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 24.6 bits (52), Expect = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 209 SYKQQFNDSFVKISQEFQKSFKNAPVVEK 237
S F +SF K+S+ + P+VEK
Sbjct: 157 SLDDSFGESFDKVSKMLDLGYPGGPIVEK 185
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 24.6 bits (52), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 216 DSFVKISQEFQKSFKNAPVVEKKTIKEHIGDLNQTPEEDN 255
D + + QK+ KNA KK+ +EH+ L + + N
Sbjct: 3 DELFETEKAPQKNAKNAKNAPKKSFEEHVHSLERVIDRLN 42
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 24.6 bits (52), Expect = 2.7
Identities = 15/58 (25%), Positives = 28/58 (47%), Gaps = 6/58 (10%)
Query: 204 ENLKNSYKQQFNDSFVKISQEFQKSF------KNAPVVEKKTIKEHIGDLNQTPEEDN 255
+NL S++ +F D+F + +++ K K P K K +L+Q ++DN
Sbjct: 48 QNLLTSHEIKFGDAFECLIEQYLKEHSFSPLSKKIPYYNKDKEKRESLELDQFAKKDN 105
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 24.6 bits (52), Expect = 2.7
Identities = 12/53 (22%), Positives = 26/53 (48%)
Query: 191 FKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTIKEH 243
+ ++ L+N++E EN +Y +++ Q+ QKS + + +K H
Sbjct: 152 YTEKELDNLSEEGENESVAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNH 204
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 24.3 bits (51), Expect = 3.5
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 24 KKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVS-ETALKGVD 82
K +G+ A+ +++ GKD ++D I L++ G++ N + + + AL+
Sbjct: 610 KIVGIRAQGDFTINSDDRVFGKDAVSKVDFILPSLNQLEGTITNVEGRVLPLKPALRFEG 669
Query: 83 TDLS 86
DLS
Sbjct: 670 YDLS 673
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 24.3 bits (51), Expect = 3.5
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 190 DFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTIKEHIGDLNQ 249
+F+ E+ + +KE + YK F + K + +N KK I E I + +
Sbjct: 46 EFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNK---RKKEILEVIANKKK 102
Query: 250 T 250
T
Sbjct: 103 T 103
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 24.3 bits (51), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 196 LNNINEVKENLK--NSYKQQFNDSFVKISQEFQKSFKNA 232
+ N + E +K ++ + D V+I+QE QKS KN+
Sbjct: 279 VENARLIMEEIKGISTLNKTSMDKLVQITQETQKSMKNS 317
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.9 bits (50), Expect = 4.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 201 EVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTIKEHIGDLNQTPEEDNQKINQ 260
E KE K ++ D F ++ +K+ KNA E+K +E + + E+ K NQ
Sbjct: 77 EPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQE---EQRRLREQQRLKQNQ 133
>ref|NP_222867.1| putative [Helicobacter pylori J99]
Length = 318
Score = 23.9 bits (50), Expect = 4.6
Identities = 11/41 (26%), Positives = 23/41 (55%)
Query: 26 IGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTYGSLL 66
+ L+ D V + +E++LGK+ AI + + + GS++
Sbjct: 223 LALATFDLVKAIFEEEVLGKNSGDNHHAIHRTMIRFLGSII 263
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 23.5 bits (49), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 193 KEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFK 230
K+ L N+ E L+N K+ F+ +V IS + +FK
Sbjct: 96 KKDLKNVKE----LRNYIKEHFSAYYVNISYSKEHNFK 129
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 23.5 bits (49), Expect = 6.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 43 LGKDYKQRLDAITKKLSKTYGSLL 66
LGKDY + + +KKL + + +L
Sbjct: 311 LGKDYDKEKEPFSKKLQQCFKEIL 334
>ref|NP_223620.1| putative [Helicobacter pylori J99]
Length = 93
Score = 23.5 bits (49), Expect = 6.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 10 SVKGDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQ 49
S + DY++ LF+++++ L A+ N K + Y Q
Sbjct: 50 SGRKDYAKFKLFLSEEVALPLAQALKNQFASKEMKLFYSQ 89
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 23.5 bits (49), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 44 GKDYKQRLDAITKKLSKTYGSLLNQ 68
G D +R+ I KK++ YG L+ Q
Sbjct: 415 GGDLLERIRGIRKKIASDYGFLMPQ 439
>ref|NP_222865.1| putative [Helicobacter pylori J99]
Length = 198
Score = 23.5 bits (49), Expect = 6.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1 MDKFLDWHYSVK 12
+DK +DWHY +K
Sbjct: 78 IDKSIDWHYPLK 89
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.1 bits (48), Expect = 7.8
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 192 KKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEK 237
+K +L+ N E L + + +F+ + EF K FK V+++
Sbjct: 388 QKLVLHLQNSQLETLSSGEYSRLRLAFMLLEMEFLKDFKGVLVLDE 433
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.1 bits (48), Expect = 7.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 197 NNINEVKENLKNSYKQQFNDSFVKI 221
+ + E+K LKNSYK+ ++++
Sbjct: 486 DKLKELKNYLKNSYKEDKRKEYLQL 510
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 23.1 bits (48), Expect = 7.8
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 194 EILNNINEVKENLKNSYK 211
+++ IN++KE++KNS K
Sbjct: 715 DVIAGINKLKESVKNSQK 732
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 23.1 bits (48), Expect = 7.8
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 29/90 (32%)
Query: 193 KEILNNINEVKENLKN------------------------SYKQQFNDSFVKISQEFQKS 228
K+++ +IN+ KEN K +Y+++ F +I+++ K+
Sbjct: 150 KQVVFSINDCKENEKTLVIGGGNSAVEYAIALCKTTPTTLNYRKK---EFSRINEDNAKN 206
Query: 229 FKNAPVVEKKTIKEHIGDLNQTPEEDNQKI 258
+ V++ T+K +G ++ EEDN +I
Sbjct: 207 LQE--VLDNNTLKSKLGVDIESLEEDNTQI 234
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.1 bits (48), Expect = 7.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 29 SAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTY-GSLLNQHEKFVSETALKGVDTDLSQ 87
S E + +L++KL+ KD+K I L+ Y + + K V E +GV+ L
Sbjct: 1088 SLETTIKELLEQKLIYKDHKDNGGYI---LANDYLSGNVKRKLKEVKEAINQGVE-GLEA 1143
Query: 88 NAKILDTLGDEVARKLKA 105
N K L+ + + + LKA
Sbjct: 1144 NVKDLELI---IPKDLKA 1158
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 23.1 bits (48), Expect = 7.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 22 VAKKIGLSAEDAVANVLQEKLLGKDYKQRL 51
+A +G+S EDA A V++ LL + K+ L
Sbjct: 420 IADPLGISVEDAAAGVIE--LLDLELKEYL 447
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 23.1 bits (48), Expect = 7.8
Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 190 DFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKT-------IKE 242
D K + + ++K L N+Y ++++ ++I+Q F ++ ++ + IK+
Sbjct: 149 DKKSRLYARMYDLK--LFNAYYERYSHQMIEINQHFTRALEHGAISVGNDAKDALIGIKQ 206
Query: 243 HIGDL 247
H+ +L
Sbjct: 207 HVANL 211
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,723
Number of Sequences: 1491
Number of extensions: 12900
Number of successful extensions: 69
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 28
length of query: 260
length of database: 494,079
effective HSP length: 76
effective length of query: 184
effective length of database: 380,763
effective search space: 70060392
effective search space used: 70060392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)