BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644978|ref|NP_207148.1| hypothetical protein
[Helicobacter pylori 26695]
(222 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223043.1| putative [Helicobacter pylori J99] 350 2e-98
ref|NP_223505.1| putative [Helicobacter pylori J99] 84 4e-18
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 30 0.040
ref|NP_222860.1| putative [Helicobacter pylori J99] 30 0.040
ref|NP_223104.1| putative [Helicobacter pylori J99] 30 0.068
ref|NP_222755.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_223243.1| putative [Helicobacter pylori J99] 28 0.20
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 27 0.34
ref|NP_223856.1| putative role in outermembrane permeabilit... 27 0.44
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 27 0.44
ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99] 27 0.44
ref|NP_223019.1| putative [Helicobacter pylori J99] 26 0.75
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 26 0.98
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 25 1.3
ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERME... 25 1.3
ref|NP_223198.1| cag island protein [Helicobacter pylori J99] 25 1.7
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 25 2.2
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 25 2.2
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 24 2.8
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 24 2.8
ref|NP_224116.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [He... 24 3.7
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 24 3.7
ref|NP_223144.1| Molybdate ABC transporter, permease [Helic... 24 3.7
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.8
ref|NP_223857.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223812.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_222934.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223621.1| putative cation efflux system protein [Hel... 23 6.3
ref|NP_223127.1| putative [Helicobacter pylori J99] 23 6.3
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 23 8.3
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 8.3
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 350 bits (898), Expect = 2e-98
Identities = 184/222 (82%), Positives = 194/222 (86%), Gaps = 2/222 (0%)
Query: 1 MAENSFKNVSTQPKVFFLLPAKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARS 60
MAENSFKNVS QPK FFLLP KTLFLLGGVFSAFFILIAGLVFFDYA+ MDNAIFN RS
Sbjct: 1 MAENSFKNVSIQPKPFFLLPVKTLFLLGGVFSAFFILIAGLVFFDYANSMDNAIFNLMRS 60
Query: 61 TPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALL 120
+S+PIL LQ I LGSSQFVLPLSLLVGVFLSLYR+NL LGVWFVLSV++FEALL
Sbjct: 61 N--SSNPILDQTLQRIVFLGSSQFVLPLSLLVGVFLSLYRKNLALGVWFVLSVVIFEALL 118
Query: 121 ESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI 180
ESLKHL A+SIQWLS SANFP+ ALSL LFYGLLILLIPH I HQ +N+L YSLFGLI
Sbjct: 119 ESLKHLLAHSIQWLSHSANFPSTIALSLALFYGLLILLIPHFIAHQIFQNILSYSLFGLI 178
Query: 181 FLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI 222
LIGLALIVLGVSFSSVLGG CLGALGACFSIGIYLSVFQKI
Sbjct: 179 LLIGLALIVLGVSFSSVLGGVCLGALGACFSIGIYLSVFQKI 220
>ref|NP_223505.1| putative [Helicobacter pylori J99]
Length = 228
Score = 83.6 bits (205), Expect = 4e-18
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 21 AKTLFLLGGVFSAFF-ILIAGLVFF-DYAHLMDNAIFNFARS-TPFNSSPILTLILQNIA 77
AK L ++G VF F I+I+G+ ++ +D + R+ P S L+ + +
Sbjct: 15 AKALGIVGIVFFILFGIVISGVASQKEWVQQLDLFFIDLIRNPAPIQGSTWLSFVFFSTW 74
Query: 78 NLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQW---- 133
S+ P++LL+G++ +R + LGVWF S++L E L+SLK L A
Sbjct: 75 -FAQSKLTTPIALLIGLWFGFQKR-IALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGE 132
Query: 134 --LSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLG 191
+ +FP+ AL+ LFYG L LL+ + + +K + L IFL+ + LG
Sbjct: 133 LVFAHGFSFPSGHALASALFYGSLALLLCYSNANNRIKTIGAIILLFWIFLMAYDRVYLG 192
Query: 192 VSF-SSVLGGFCLGALGACFSIGIYLSVFQK 221
V + S VLGGF LG +C S+ +YL ++
Sbjct: 193 VHYPSDVLGGFLLGIAWSCCSLALYLGFLKR 223
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 30.4 bits (67), Expect = 0.040
Identities = 41/143 (28%), Positives = 66/143 (45%), Gaps = 21/143 (14%)
Query: 82 SQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVI----LFEAL-LESLKHLFA-YSIQWLS 135
S+++ + L+V L LY NL+L W VL I FEAL L +K F+ Y I LS
Sbjct: 10 SRYITGVVLIVVAGLILYADNLLL-FWAVLGGIYAVGFFEALRLFQVKASFSLYLILVLS 68
Query: 136 RSANFPNATALSLVLFYGLLIL-LIPHLITHQT-------LKNVLFYSLFGL------IF 181
A + N + L +++ +I + H + V F++LFG+ +
Sbjct: 69 WVAAYFNGHPVECALISAMVMASVIAYQKAHHSEAILPFLYPGVGFFALFGVYKDFGAVA 128
Query: 182 LIGLALIVLGVSFSSVLGGFCLG 204
+I L ++V+ + GG LG
Sbjct: 129 IIWLLVVVVASDVGAFFGGKLLG 151
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 30.4 bits (67), Expect = 0.040
Identities = 33/135 (24%), Positives = 65/135 (47%), Gaps = 12/135 (8%)
Query: 73 LQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLF----- 127
++N+ L S + VL SL + + L + L+ V+F+ S+ F A + +LF
Sbjct: 68 IKNLNALFSKRGVLSFSLPISLESLLLPKILLPMVFFIFSLFWFVASVRLGYYLFNAQSS 127
Query: 128 -AYSIQWLSRSANFPNATALSLVLFYGLLI---LLIPHLITHQTLKNVLFYSLFGLIFLI 183
+ + ++ + + LF GL++ L + ++ +K F L GL+F+
Sbjct: 128 VLFILHTALKTFALKPTKTIGVALFLGLVLMKFLFVLSVLNATRIKKARFL-LGGLLFI- 185
Query: 184 GLALIVLGVSFSSVL 198
L +VL ++F+S+L
Sbjct: 186 -LVGVVLELAFNSLL 199
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 29.6 bits (65), Expect = 0.068
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 95 FLSLYRRNLVLGVWFVLSVILF-----EALLES---LKHLFAYSIQWLSRS------ANF 140
FL+ +++ L + VL V LF +A L+ + HL +WL+ + + F
Sbjct: 19 FLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFRINHLKTMPFKWLTLAFLGVFLSIF 78
Query: 141 PN---------------ATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGL 185
PN A +SL G L LL + + + VLFYS+ F+ GL
Sbjct: 79 PNMFNMYDSQTFRYNLFALNMSLTYACGALCLLFSSRLRIKLNQKVLFYSMAVANFINGL 138
Query: 186 ALIVLGVSFS 195
+V + F+
Sbjct: 139 LSLVQKIYFN 148
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 28.5 bits (62), Expect = 0.15
Identities = 40/143 (27%), Positives = 65/143 (44%), Gaps = 22/143 (15%)
Query: 88 LSLLVGVFLSLYRRN------LVLGVWFVLSVILFEALLES---LKHLFAYSI------- 131
L+ ++ + SL +N L+ +WFV LF L++ LF +I
Sbjct: 44 LAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNYALKNPSRFYELFQNAIFIAPNMI 103
Query: 132 -QWLSRS-ANFPN-ATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALI 188
Q LS+S +NF N A +L + +G L ++H + LF S+ +FL L I
Sbjct: 104 TQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVLFAI 163
Query: 189 VLGVSFSSVLGGFC-LGALGACF 210
++ V + + +C LGAL F
Sbjct: 164 IILVYLEAHV--WCSLGALFLAF 184
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 28.1 bits (61), Expect = 0.20
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 24/119 (20%)
Query: 87 PLS-LLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKH-----LFAYSIQWLSRSANF 140
PLS L +FL + + + FV + I F KH +F I+ L A +
Sbjct: 3 PLSNALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPVFDEIIKTLLNGARY 62
Query: 141 PNATALSLVLFY---GLLILLIPH---------------LITHQTLKNVLFYSLFGLIF 181
N SL + + GLL LL P +I + N+++Y ++G +F
Sbjct: 63 DNRVVSSLAILFILIGLLGLLAPKHQTRILNIMACFSIAIILFLNIANIVYYGIYGNVF 121
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 27.3 bits (59), Expect = 0.34
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 68 ILTLILQNIANLGSSQFVLPLSLLVG-VFLSLYRRNL----------VLGVWFVLSVILF 116
++ L+N+ N F LP + L G +F++L N+ +LGV ++++
Sbjct: 874 LIVFALKNLTNSLLCFFTLPFAFLGGLIFMNLMGFNMSVAALVGFLALLGVASETAIVMI 933
Query: 117 EALLESLKHLFAYSIQWLSRSA---NFPNATAL----SLVLFYGLLILLIPHLITHQT-- 167
L ++ + ++ + +A + L L+ F+ +L LIP + +H T
Sbjct: 934 IYLEDAFQKFIKTPLKERTTAALKETIMHGAVLRVRPKLMTFFSILASLIPIMYSHGTGS 993
Query: 168 --LKNVLFYSLFGLIFLIGLALIVLGVSF 194
+K++ L G++ + L L ++ ++
Sbjct: 994 EIMKSIAAPMLGGMMSSVVLTLFIIPTAY 1022
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 26.9 bits (58), Expect = 0.44
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 88 LSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSR------SANFP 141
L++ VG+ SL+++ L LG+W L L L K+ F +I SR S+NF
Sbjct: 426 LNVPVGLQFSLFKKYLSLGLWNDLQ--LSNVALMQSKNSFVPTIPNESREFGNFVSSNFS 483
Query: 142 NATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIF 181
L Y L H I + + N+ +Y+ +F
Sbjct: 484 MYVNTDLAREYNKLF----HTIQLEAIFNIPYYTFKNGLF 519
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 26.9 bits (58), Expect = 0.44
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 36 ILIAGLVFFDYAHLMD-NAIFNFARSTPFNSSPILTLILQNIANLGSSQF-VLPLSLLVG 93
++ AG VFF HL D N + + +L L +Q++ L S + + L G
Sbjct: 72 VIFAGWVFFGLTHLEDLTHYLNLPETLGYLVFALLFLAIQSVLALPISYYTTMHLDKEFG 131
Query: 94 ---VFLSLYRRNLVLGVWFVLSV--ILFEALLESLKHLFAYSI 131
V LSL+ ++ G+ L V +L L+ ++H+ + I
Sbjct: 132 FSKVSLSLFFKDFFKGLLLTLGVGLLLIYTLIMIIEHVEHWEI 174
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
Length = 422
Score = 26.9 bits (58), Expect = 0.44
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 45 DYAHLMDNAIFNFARSTPFNSS-PILTLILQNIANLGSSQFVL 86
DYAH +D ++ PFNS +L L +A L F++
Sbjct: 54 DYAHALDKKVYATINGFPFNSQLKLLEEHLYKMAELEPDAFII 96
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 26.2 bits (56), Expect = 0.75
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 17 FLLPAKTLFLLGGVFSA------FFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILT 70
F+ P L LL VFS +F I GL+ ++ +AIF ++ + S +
Sbjct: 26 FIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGL---LIISSAIFGLTQAITSSRSHNIF 82
Query: 71 LILQ---------NIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLE 121
L +A + S V+ L + + LS Y N++ + F ++ F ++
Sbjct: 83 LFYMLSPATFKQITLALIASRLIVVILYAFIFIVLSFYALNIITILNFKALILGFISIFS 142
Query: 122 SLKHLFAYSIQWLSRSANFPNATAL----SLVLFYGLL-------ILLIPHLITHQTLKN 170
S F +I +++R F N ++ +++ Y L+ + +P+ I +K
Sbjct: 143 SALFCFCLAI-FVARI--FQNEQSILGFCNIINLYALMSCNVFVPLEYLPN-IGQLFIKT 198
Query: 171 VLFYSLFGLIF--LIGL-ALIVLGVSFSSVLGGFCLGALGA 208
+FY L L+ G+ ++VL S ++GG L L A
Sbjct: 199 SIFYYLNQLLIKAFQGIDTILVLATSTFFIIGGIILFLLSA 239
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 25.8 bits (55), Expect = 0.98
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 29 GVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVLPL 88
GV L+AG++ + L + A+S P ++ + +++ N+ S FV
Sbjct: 337 GVIVMGLFLLAGILEERASSLEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVGEF 396
Query: 89 SLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLF 127
L+G F + ++ G +LS + +L S K +F
Sbjct: 397 LSLLGFFATYPLLAIIAGTSIILSAVY---MLTSYKDVF 432
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 25.4 bits (54), Expect = 1.3
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 3/52 (5%)
Query: 146 LSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSFSSV 197
+SL++F G+ + IP I+ N++ + ++ LIG+ LIVL F+ +
Sbjct: 173 ISLIIFAGI-VSGIPSAISGTF--NLVNTGVINILMLIGIVLIVLATIFAII 221
>ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter
pylori J99]
Length = 326
Score = 25.4 bits (54), Expect = 1.3
Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 25/193 (12%)
Query: 23 TLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSS 82
+L L G V SAF +AG + F AI + + SS L IA +G S
Sbjct: 143 SLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCL----IAFIGLS 198
Query: 83 QFVLPLSLLVGVFLSLYRRNLV-LGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFP 141
+PL FL +R NL+ L LS+ + LL SL L S+
Sbjct: 199 LGFIPL------FLLRWRINLLSLSDAQSLSLGINPVLLRSL-CLVCVSV---------A 242
Query: 142 NATALSLVLFYGLLILLIPH---LITHQTLKNVLFYS-LFGLIFLIGLALIVLGVSFSSV 197
+A A+S+ G + L+IPH L L+ +L S L G FL+ ++ ++ +
Sbjct: 243 SALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDL 302
Query: 198 LGGFCLGALGACF 210
G LGA F
Sbjct: 303 PVGIATSVLGAPF 315
>ref|NP_223198.1| cag island protein [Helicobacter pylori J99]
Length = 218
Score = 25.0 bits (53), Expect = 1.7
Identities = 30/113 (26%), Positives = 48/113 (41%), Gaps = 15/113 (13%)
Query: 103 LVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHL 162
L +G FVL I F L S S++ + F A + VLF+GL + +
Sbjct: 104 LCMGGIFVLFAIYFVFLRTSKNTELVESLKTKLKLQYFYYAFGVGAVLFFGLETIRSIYE 163
Query: 163 I-------THQ----TLKNVLF----YSLFGLIFLIGLALIVLGVSFSSVLGG 200
+ T+ LKN+ F Y ++ +I +IG+ + G+ S GG
Sbjct: 164 LYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFASKKQGG 216
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 24.6 bits (52), Expect = 2.2
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 86 LPLSLLV---GVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSA 138
+P+ +L+ G+FL+ Y R L F ILF+ +S + +S LS A
Sbjct: 18 IPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGA 73
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 24.6 bits (52), Expect = 2.2
Identities = 20/68 (29%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Query: 149 VLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSFSSVLGGFCLGALGA 208
VLF L+I ++P L + + ++ L L+ AL++ S LG F G +GA
Sbjct: 310 VLFIALMIAVLPPLFSMGSFDEWIYRGLVALMVSCPCALVI-----SVPLGYF--GGVGA 362
Query: 209 CFSIGIYL 216
GI +
Sbjct: 363 ASRKGILM 370
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 24.3 bits (51), Expect = 2.8
Identities = 18/83 (21%), Positives = 40/83 (47%), Gaps = 11/83 (13%)
Query: 84 FVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQ-------WLSR 136
F+ P +L G+ + + +L + + S +L+ + KHLF++++ ++
Sbjct: 288 FLNPHLILQGILIVI----AMLSLHLITSTLLWRKYFKEAKHLFSFALGASMPLTFLVTT 343
Query: 137 SANFPNATALSLVLFYGLLILLI 159
+A A A+S +Y +L+ I
Sbjct: 344 AAVGLKAQAISQNTYYAMLMAAI 366
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 24.3 bits (51), Expect = 2.8
Identities = 24/97 (24%), Positives = 40/97 (40%), Gaps = 13/97 (13%)
Query: 78 NLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRS 137
N S+F+ S L L R +V + + V FE L++ + L
Sbjct: 338 NKALSEFIF--SALQNALKPLIERQVVSDLRHLGMVFAFEVFLQTKERLSL--------- 386
Query: 138 ANFPNATALSLVL--FYGLLILLIPHLITHQTLKNVL 172
A F A L+L + L+ P++ITH+ +K +
Sbjct: 387 AVFKKALKKGLLLRPLNNTIYLMPPYIITHEEIKKAI 423
>ref|NP_224116.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99]
Length = 344
Score = 23.9 bits (50), Expect = 3.7
Identities = 15/51 (29%), Positives = 22/51 (42%)
Query: 29 GVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
G+F I L+ +A ++ A A TPF + IL+N A L
Sbjct: 289 GLFEGLRDKIDALLLHSHASMIGEAFNTLALKTPFKGRLLHAQILENEALL 339
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 23.9 bits (50), Expect = 3.7
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 168 LKNVLFYSLFGLIFLIGLALIVLGVSFSSVLGGFCLGALGACFSI 212
+ +L + +G+ +G I+ +SF ++GG AL F I
Sbjct: 216 IDKILMHQRYGIFIFLGFMFIIFSLSF--LIGGGVQKALEEGFKI 258
>ref|NP_223144.1| Molybdate ABC transporter, permease [Helicobacter pylori J99]
Length = 224
Score = 23.9 bits (50), Expect = 3.7
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 68 ILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLV 104
++T+ L L ++ +LP+ + +G FLSL +RNL+
Sbjct: 6 LITMRLSFSLALITTLILLPIGIFLGYFLSL-KRNLL 41
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 23.5 bits (49), Expect = 4.8
Identities = 38/165 (23%), Positives = 66/165 (39%), Gaps = 40/165 (24%)
Query: 41 LVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVL------------PL 88
L+F+++ L +F+ + ++ +++ L A S+QF + P+
Sbjct: 188 LIFWNFGTLQYKEVFSMLNNADYSMLFYISVFLFIGAMGKSAQFPMHTWLANAMEGPTPV 247
Query: 89 SLLV--------GVFLSLYRRNLVLGV----WFVLSVILFEALL--------ESLKHLFA 128
S L+ GV+L + L V +F+ + F AL + LK + A
Sbjct: 248 SALIHAATMVTAGVYLIIRANPLYSAVFEVGYFIACLGAFVALFGASMALVNKDLKRIVA 307
Query: 129 YSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLF 173
YS LS+ A L G + + HL TH K++LF
Sbjct: 308 YST--LSQLGYMFVAAGL------GAYAIALFHLFTHAFFKSLLF 344
>ref|NP_223857.1| putative [Helicobacter pylori J99]
Length = 159
Score = 23.5 bits (49), Expect = 4.8
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 98 LYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFPNATALSLVLFYGL 154
LY R L + +L L LL + F +S+ WL+ + + ++ YG+
Sbjct: 28 LYWRILAFLIDSLLVAFLLSDLLRACA--FLHSLYWLTNPIYYSAFVVMGFIILYGV 82
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 23.5 bits (49), Expect = 4.8
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 86 LPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEAL 119
+P+++L+G+++ +R + +L V + ++L A+
Sbjct: 200 IPIAILMGLYMRFFRPHKILEVSVIGFILLIIAI 233
Score = 22.7 bits (47), Expect = 8.3
Identities = 22/97 (22%), Positives = 40/97 (40%), Gaps = 18/97 (18%)
Query: 88 LSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFPNATALS 147
+ L +G F+ + +LG+ ++ IL ++++L H S F A +
Sbjct: 151 IKLEMGKFVGMIASLGILGIMLIIIAILAMVVVKALAH---------SPWGFFTIAMTIP 201
Query: 148 LVLFYGLLILLI-PHLITHQTLKNVLFYSLFGLIFLI 183
+ + GL + PH +L S+ G I LI
Sbjct: 202 IAILMGLYMRFFRPH--------KILEVSVIGFILLI 230
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 23.5 bits (49), Expect = 4.8
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Query: 150 LFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSF--SSVLGGFCLGALG 207
L G+L +L+ +L LK + ++G + +G+ L+ F + LG F L A+G
Sbjct: 94 LMAGILQILLGYLKIGNLLKFIPQSVMYGFVNALGILLLTEQFKFLQNQNLGVFVLLAIG 153
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 23.1 bits (48), Expect = 6.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 153 GLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSF 194
GLL LL H + + K + L GL+ L L++L F
Sbjct: 968 GLLPLLFSHSVGSEVQKPLAIVVLGGLVTSSALTLLLLPPMF 1009
>ref|NP_223127.1| putative [Helicobacter pylori J99]
Length = 202
Score = 23.1 bits (48), Expect = 6.3
Identities = 35/137 (25%), Positives = 61/137 (43%), Gaps = 24/137 (17%)
Query: 94 VFLSLYRRNLVLGVWFVLSVILFEALLESLKHL-----FAYS----IQWLSRSANFPNAT 144
V LSL+ + + F+ + F L + +HL FA+S I S PNA+
Sbjct: 60 VLLSLF----LCAIGFIAGAVGFYRLSKITRHLSFFENFAFSFLAVILCALLSYLVPNAS 115
Query: 145 -ALSLV-----LFYGLLILLIPHLITHQTL-----KNVLFYSLFGLIFLIGLALIVLGVS 193
ALSL+ +FY + L T + + +LF + L+ ++ AL+++ ++
Sbjct: 116 NALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLLFSFMLALLGVLVQALVIIFLT 175
Query: 194 FSSVLGGFCLGALGACF 210
+ +L L LG F
Sbjct: 176 IAVILMCVALSFLGRAF 192
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 22.7 bits (47), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 27 LGGVFSAFFILIAGLVFFDYAHLMDNA 53
L G S +L+ FF AH++DNA
Sbjct: 76 LSGQASCDGVLVVVAHFFKDAHILDNA 102
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 22.7 bits (47), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 176 LFGLIFLIGLALIVLGVSFS 195
L L+F++G +L+ LGV S
Sbjct: 62 LKSLMFVVGFSLVFLGVGMS 81
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.333 0.148 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,621
Number of Sequences: 1491
Number of extensions: 10532
Number of successful extensions: 80
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 37
length of query: 222
length of database: 494,079
effective HSP length: 74
effective length of query: 148
effective length of database: 383,745
effective search space: 56794260
effective search space used: 56794260
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.7 bits)