BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644668|ref|NP_206837.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(97 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222753.1| putative [Helicobacter pylori J99] 185 1e-49
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 25 0.21
ref|NP_223632.1| putative [Helicobacter pylori J99] 25 0.35
ref|NP_223401.1| putative [Helicobacter pylori J99] 24 0.46
ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR... 23 0.79
ref|NP_223710.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223651.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 22 3.0
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_222977.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 21 5.1
ref|NP_223604.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 21 5.1
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 20 6.7
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 20 6.7
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 20 6.7
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 20 8.7
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 20 8.7
>ref|NP_222753.1| putative [Helicobacter pylori J99]
Length = 100
Score = 185 bits (470), Expect = 1e-49
Identities = 96/100 (96%), Positives = 97/100 (97%), Gaps = 3/100 (3%)
Query: 1 MDFSQLGGL---LDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 57
MDFSQLGGL LDG+KKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL
Sbjct: 1 MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 60
Query: 58 LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 97
LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
Sbjct: 61 LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 100
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 25.4 bits (54), Expect = 0.21
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDL-------QIDDSLLEDKEAMQ 65
+K+E+ + + K I + G +V V N ++DL ++ D ++E+K +
Sbjct: 496 VKREYISISQDKKHIITPTHKGKRVVEVFENAYQFIIDLTYTKQMEEVLDEIVENKSS-Y 554
Query: 66 IYLMSALNDGYKAVEENRKN 85
+ +S LN +E+ +N
Sbjct: 555 VDFISNLNSKCPKIEKLERN 574
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 24.6 bits (52), Expect = 0.35
Identities = 14/51 (27%), Positives = 21/51 (40%)
Query: 26 DTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGY 76
D I T G V +FNG+ +Q+ L K+ + + N GY
Sbjct: 262 DLISTEPGSYGEVWDTFNGIAFSAPVQLPQFLTRLKDKVYTFFKKQPNSGY 312
>ref|NP_223401.1| putative [Helicobacter pylori J99]
Length = 419
Score = 24.3 bits (51), Expect = 0.46
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 38 VSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEE 81
V VS N L ++L D S ED A +IY + ND YK + +
Sbjct: 241 VRVSQN-LTRQIELSWDKSPEEDVIAYRIYASNNRNDKYKFIAQ 283
>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
pylori J99]
Length = 260
Score = 23.5 bits (49), Expect = 0.79
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 7 GGLLDGMKKEFSQLE--EKNKDTIHTSKSGGGMVSVSFNG 44
G LD + S+L+ EK T H+S S GG+VS G
Sbjct: 174 GESLDSFTMDLSELDIQEKFLKTTHSSHS-GGLVSTMVKG 212
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 39 SVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGY 76
S++ NG+ + + + + + DK+ +++Y + N GY
Sbjct: 153 SLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGY 190
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 21.9 bits (45), Expect = 2.3
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 42 FNGLGELVD---LQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAF 88
FN E+ D ++I ++L+DK + I L+ L GY +E R+ L++
Sbjct: 244 FNESVEIYDECLIEIAQNVLKDKFSYDIDLLQVLVKGY--AKEIREFLSY 291
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/38 (23%), Positives = 19/38 (49%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVD 50
++ E ++++K + IH ++ G VSF +D
Sbjct: 212 LELEVPEIKDKEIEIIHCARIPGNRAKVSFFSHNSRID 249
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 67 YLMSALNDGYKAVEENRKNLAFNM 90
YL N +KA ++R NL +M
Sbjct: 428 YLTGPFNKAFKADAQDRSNLMVSM 451
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 47 ELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEE 81
E ++ + +DS+ D EA+ ++L S + + ++EE
Sbjct: 192 EFIESKEEDSMGMDNEAVDLFL-SEIQEDIDSLEE 225
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 20.8 bits (42), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 46 GELVDLQIDDSLLEDKEAMQIYLMSAL 72
G VDL I+ S + M + L SAL
Sbjct: 97 GNSVDLDIETSEMGKNSTMYLALSSAL 123
>ref|NP_223604.1| putative [Helicobacter pylori J99]
Length = 218
Score = 20.8 bits (42), Expect = 5.1
Identities = 13/57 (22%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Query: 31 SKSGGGMVSVSFNGLGELVDLQIDDSLLEDK--EAMQIYLMSALNDGYKAVEENRKN 85
++SG ++ L ++ D L+ K E +IYL + N +++N+K+
Sbjct: 10 NESGFILIEKELERLNVTAQVKEDGIELKGKNTEQARIYLQTLFNSNIVELDDNKKS 66
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 20.8 bits (42), Expect = 5.1
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 55 DSLLEDKEAMQIYLMSALNDGYKAVEEN 82
+ + E K A IY + +++ + A+E++
Sbjct: 154 EKIREAKTASDIYALVPIDEQFNAIEQD 181
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 38 VSVSFNGLGELVDLQIDDSLLED 60
+SV+ N + +DL + ++LED
Sbjct: 319 ISVNANLMNATIDLNLAKTVLED 341
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 72 LNDGYKAVEENRKNLAFNMLGNFA 95
LN + NLA N GNF+
Sbjct: 1744 LNSALNLLGNGGNNLAINAKGNFS 1767
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 33 SGGGMVSVSFNGL 45
S GG S++FNGL
Sbjct: 1197 SSGGGASLNFNGL 1209
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 20.0 bits (40), Expect = 8.7
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 9 LLDGMKKEFSQLEEKNKDTIHT 30
L+D K+ S +EK++ T HT
Sbjct: 105 LVDRANKKPSHAKEKHEKTEHT 126
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 20.0 bits (40), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 61 KEAMQIYLMSALNDGYK 77
+E ++ + +A NDGYK
Sbjct: 86 QEESKVLIENAKNDGYK 102
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.134 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,209
Number of Sequences: 1491
Number of extensions: 4359
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 97
length of database: 494,079
effective HSP length: 73
effective length of query: 24
effective length of database: 385,236
effective search space: 9245664
effective search space used: 9245664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)