BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644993|ref|NP_207163.1| hypothetical protein
[Helicobacter pylori 26695]
         (30 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223362.1|  EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ...    21  6.4
ref|NP_222984.1|  GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P...    21  6.4

>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
          Length = 941

 Score = 20.8 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (61%)

Query: 8   LDLGSSAARHEGSIPF 23
           +D+G  A RH G + F
Sbjct: 557 VDIGPKAGRHGGEVVF 572



>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
          [Helicobacter pylori J99]
          Length = 484

 Score = 20.8 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (74%)

Query: 1  MAKLVDALDLGSSAAR 16
          MAK+   +D+GS++ R
Sbjct: 1  MAKITTVIDIGSNSVR 16



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.322    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,215
Number of Sequences: 1491
Number of extensions: 335
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 30
length of database: 494,079
effective HSP length: 6
effective length of query: 24
effective length of database: 485,133
effective search space: 11643192
effective search space used: 11643192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)