BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644995|ref|NP_207165.1| hypothetical protein
[Helicobacter pylori 26695]
(202 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223731.1| putative [Helicobacter pylori J99] 351 9e-99
ref|NP_223788.1| putative [Helicobacter pylori J99] 39 7e-05
ref|NP_223787.1| putative [Helicobacter pylori J99] 33 0.004
ref|NP_222774.1| putative [Helicobacter pylori J99] 30 0.059
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 29 0.10
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 28 0.13
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 28 0.17
ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicob... 27 0.29
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 27 0.29
ref|NP_224114.1| putative component of cation transport for... 27 0.38
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 0.38
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 26 0.65
ref|NP_223158.1| putative [Helicobacter pylori J99] 26 0.85
ref|NP_224023.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223185.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_224155.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_223934.1| 30S RIBOSOMAL PROTEIN S13 [Helicobacter py... 25 1.5
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 25 1.5
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_222772.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223386.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_222813.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 23 4.2
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223515.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223176.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_222886.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 23 5.5
ref|NP_223409.1| putative [Helicobacter pylori J99] 23 7.2
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 23 7.2
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 23 7.2
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 9.4
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 9.4
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 351 bits (900), Expect = 9e-99
Identities = 181/204 (88%), Positives = 190/204 (92%), Gaps = 5/204 (2%)
Query: 1 MSKISNNYNPSLMVRDYHTQRVGSHTKNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAI 60
MSKISN+YNPSL +RDYH+QRV H + KEENKEIQNLSENDEKIKLAKQAKQDNLAI
Sbjct: 1 MSKISNHYNPSLTMRDYHSQRVSPHAR---KEENKEIQNLSENDEKIKLAKQAKQDNLAI 57
Query: 61 GDLESRLKSLKGMDKDAKELVGISKAYAHNNEKDRSDFEHFKSRLDKAIDSFNQK--SGN 118
GDLESRLKSLKGMDKDAKELVGISK+YAHNNEKDRSDFE FKSRLDKAIDSFNQ +G
Sbjct: 58 GDLESRLKSLKGMDKDAKELVGISKSYAHNNEKDRSDFERFKSRLDKAIDSFNQNLDNGA 117
Query: 119 DNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRL 178
+LKLP +IDIDDTKALEKFSKSLESEKE+IQNSLHQWKKQLAETNHLNKEYNTLDKTRL
Sbjct: 118 ASLKLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLDKTRL 177
Query: 179 NAQKFQDVHDTSKITPSRLQDLLA 202
NAQKFQDVHDTSKITPSRLQDLLA
Sbjct: 178 NAQKFQDVHDTSKITPSRLQDLLA 201
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 39.3 bits (90), Expect = 7e-05
Identities = 44/187 (23%), Positives = 79/187 (41%), Gaps = 18/187 (9%)
Query: 14 VRDYHTQRVGSHTKNGEKEENKE-------IQNLSENDEKIKLAKQAKQDNLAIGDLESR 66
+ + R + K EKE N++ +NL + +E +K ++AK+ + +
Sbjct: 28 IESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALK--ERAKEQQAQFDEAVKQ 85
Query: 67 LKSLKGMDKDAKELVGISKAYAHNNEKDRSDFEHFKSRLDKAIDSFNQKSGN-DNLKLPG 125
+L D+ AK + K +K + K + +QK + LK
Sbjct: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145
Query: 126 NIDIDDTKAL--EKFSKSLESEKENIQNSLHQ-----WKKQLAETNHLNKEY-NTLDKTR 177
N KA +K ++ LE E+E I+ +LH+ +K+Q + L E N K
Sbjct: 146 NEAESRLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205
Query: 178 LNAQKFQ 184
L++Q+FQ
Sbjct: 206 LSSQQFQ 212
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 33.5 bits (75), Expect = 0.004
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 39/185 (21%)
Query: 30 EKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDA------------ 77
+K EI L + EKI++ Q LA+ LE L ++ +
Sbjct: 198 DKHNQSEIVGLEKLKEKIEIVFSKNQTELAL--LECDLTDFDSIENHSIWEQKIVGSGDV 255
Query: 78 -----------KELVGISKAYAHNNE-----KDRSDFEHFKSRLDKAIDSFNQKSGNDNL 121
++ V + Y +N + + E FK +L+ D+ Q+S +
Sbjct: 256 AIANLIKTLSNEDWVAQGREYVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTDTIK 315
Query: 122 KLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTL-DKTRLNA 180
K+ + +ALE+ + +++E+ N Q L +T +L + TL K + N
Sbjct: 316 KMKEDYTNKTDEALERLDEIIKTEQNNSQTKL--------DTENLKRIIETLRSKIKANQ 367
Query: 181 QKFQD 185
QK D
Sbjct: 368 QKMID 372
Score = 25.4 bits (54), Expect = 1.1
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 44/186 (23%)
Query: 27 KNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDK-DAKELVGISK 85
K E NK + L DE IK + Q L +L+ +++L+ K + ++++ SK
Sbjct: 316 KMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKSK 375
Query: 86 AYAHNNEKD--RSDFEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDIDDTK---------- 133
+ N + D +++ + K + KA + N+ +K DI+ K
Sbjct: 376 EMSRNFKLDSNKNEIDAIKDLIKKANEQITNH--NETIK-----DIEKQKKSCKEQTWKF 428
Query: 134 -----------------ALEKFSKSLESE-KEN------IQNSLHQWKKQLAETNHLNKE 169
LEK +LE E EN ++N + + +K + + E
Sbjct: 429 LINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEKNMVSIKPIVNE 488
Query: 170 YNTLDK 175
NTL K
Sbjct: 489 INTLLK 494
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 29.6 bits (65), Expect = 0.059
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 79 ELVGISKAYAHNNEK----------DRSDFEHFKSRLDKAIDSFNQKSGNDNLKLPGNID 128
EL +KA N+K +R E ++RL A ++ NL+
Sbjct: 157 ELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRC--TNLEKENQRL 214
Query: 129 IDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQ 181
D K LE KSLE+ ++ +L QLA+ KE ++K+ L +
Sbjct: 215 TDKLKQLESAQKSLENTNNQLRQALENSNVQLAQA----KEKIAIEKSELERE 263
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 28.9 bits (63), Expect = 0.10
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 37 IQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAHNNEKDRS 96
I N +E +KL K K + LE+ +K + + + + N +K
Sbjct: 331 ISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLL 390
Query: 97 DFEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKE 147
+ + + LD ++ + + LKL I+D + EKF K LE +KE
Sbjct: 391 NQQKVQVALDCLKNAKTDEERKECLKL-----INDPEIREKFRKELELQKE 436
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 28.5 bits (62), Expect = 0.13
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 39/168 (23%)
Query: 27 KNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKA 86
+N KE NKE +N + KIK AK ES++K + AKE + + K
Sbjct: 25 ENKAKESNKENKNNKAKEGKIKEAKTK----------ESKVK------ETAKEPIPVKK- 67
Query: 87 YAHNNEKDRSDFEHFKSRLDKAI--DSFNQKSGNDNLKLPGNIDIDDTKAL-EKFSKSLE 143
+ N + E F + L + +S Q S K+P I K L +K+ K L
Sbjct: 68 LSFNEALE----ELFANSLSDCVSYESIIQISA----KVPTLAQIKKIKELCQKYQKKLV 119
Query: 144 SEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQDVHDTSK 191
S E + K+L N ++K NT +K ++ ++ +D +D K
Sbjct: 120 SSSE--------YAKKL---NAIDKIKNTEEKQKVLDEELEDGYDFLK 156
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 28.1 bits (61), Expect = 0.17
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 129 IDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQK 182
+D K L+K ++LESEKE QN L K+L E HL+ R NAQK
Sbjct: 57 LDYLKILQK--ENLESEKEKSQNIL----KELEEKYHLDPSL-----VRNNAQK 99
>ref|NP_223977.1| BIOPOLYMER TRANSPORT EXBD PROTEIN [Helicobacter pylori J99]
Length = 129
Score = 27.3 bits (59), Expect = 0.29
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 25 HTKNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDK--DAKELVG 82
+ KN EK + ND+K+ + + DN+ + D + L++L + K D K L+
Sbjct: 44 NAKNAEKSQ--------PNDQKVVVISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLID 95
Query: 83 ISKAYAHNNEKDRSD-FEHFKSRLD 106
+ + D+S FE F S +D
Sbjct: 96 L--------KSDKSSRFETFISIMD 112
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 27.3 bits (59), Expect = 0.29
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 38 QNLSENDEKIKLAKQAKQDNLAIGDLESRLKSL-KGMDKDAKEL 80
+ L D++IK+AK K+D + + E +K L K M + AK L
Sbjct: 597 EELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRERAKNL 640
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 26.9 bits (58), Expect = 0.38
Identities = 37/138 (26%), Positives = 57/138 (40%), Gaps = 30/138 (21%)
Query: 49 LAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAHNNEKDRSDFEHFKSRLDKA 108
L Q + + GD ES +K AK+L GISK +AH +D K+++ +
Sbjct: 631 LQNQGLELEILSGDNESSVKEC------AKKL-GISKYHAHLTPED-------KAQIISS 676
Query: 109 IDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNK 168
G+ N +D AL++ S SL EK + K + L +
Sbjct: 677 YKGVCAMVGDGN---------NDALALKQASVSLGFEKSAL-------SKSACDILLLEE 720
Query: 169 EYNTLDKTRLNAQKFQDV 186
+ + L+K NAQK V
Sbjct: 721 DLSLLEKAFHNAQKVYQV 738
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 26.9 bits (58), Expect = 0.38
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 130 DDTKALEKFSKSLESEKENIQNSLHQWKKQLA 161
D+ + LEK K LE E++ ++ +KKQ A
Sbjct: 106 DEKRYLEKEKKELEKERQILEQERENFKKQRA 137
Score = 22.3 bits (46), Expect = 9.4
Identities = 15/67 (22%), Positives = 27/67 (39%)
Query: 131 DTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQDVHDTS 190
+ K LEK + LE E+EN + K+ A+ Y K + + + + +
Sbjct: 114 EKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEEL 173
Query: 191 KITPSRL 197
+ S L
Sbjct: 174 EAQKSAL 180
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 26.2 bits (56), Expect = 0.65
Identities = 26/101 (25%), Positives = 46/101 (44%), Gaps = 15/101 (14%)
Query: 74 DKDAKELVGISKAYAHNNEKDRSD---FEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDID 130
D + + G+ Y + N + F++ ++ LD+ ID Q + L N D
Sbjct: 25 DANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGID-VAQNAYTSTL----NTD-- 77
Query: 131 DTKALEKFSKSLESEKENI---QNSLHQWKKQLAETNHLNK 168
KAL++FSK++E+ K + N +H + A N L +
Sbjct: 78 --KALQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLER 116
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 25.8 bits (55), Expect = 0.85
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 21 RVGSHTKNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKEL 80
++ S K E+E K + E K+ L K+ + + G++ES+ K G D +
Sbjct: 239 KLESEAKVSEQEFLKAKEQ--EAKRKVALKKKLEHERGNAGNIESQTKIEVGEDIPTQIQ 296
Query: 81 VGISKAYAHNNEKDRSDFEH 100
I K+ NE++ D ++
Sbjct: 297 AQIPKSRVRLNEREIYDLDY 316
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.4 bits (54), Expect = 1.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 30 EKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDK 75
E+EE + I E EK K +KQ+ + NL I + + LK K +DK
Sbjct: 37 EQEEREVI----EWREKKKASKQSYKQNLQINKIANDLKRDKIVDK 78
>ref|NP_223185.1| putative [Helicobacter pylori J99]
Length = 330
Score = 25.4 bits (54), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 136 EKFSKSLESEKENIQNSLHQWKKQLA 161
+KFS S + E I +SL QWK+ A
Sbjct: 203 DKFSPSTKEELSMILSSLFQWKEAWA 228
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 25.0 bits (53), Expect = 1.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 27 KNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKS-------LKGMDKDAKE 79
K + E+ K++ N +K A + + + ++E + S +KG+ KD K+
Sbjct: 101 KLNDAEKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKD 160
Query: 80 LVGISKAYAHNN 91
L SKA NN
Sbjct: 161 LEYYSKACELNN 172
>ref|NP_223934.1| 30S RIBOSOMAL PROTEIN S13 [Helicobacter pylori J99]
Length = 120
Score = 25.0 bits (53), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 34 NKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLK 68
+K + LSE DE +AK+ +Q L GDL +++
Sbjct: 42 DKRVHELSE-DEVSSIAKKIQQSYLVEGDLRKKVQ 75
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 25.0 bits (53), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 63 LESRLKSLKGMDKDAKELVGISKAYAHNNEKDRSDF 98
LE++L S KG A+EL+ KA NE ++ +
Sbjct: 201 LEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESY 236
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.6 bits (52), Expect = 1.9
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 92 EKDRSDFEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKE---N 148
EK +++ E K+ +K ++ + NI+ ++ +E+ + E EK+ N
Sbjct: 134 EKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNN 193
Query: 149 IQNSLHQWKKQLAETNH 165
Q L +Q + NH
Sbjct: 194 TQKDLVNKAEQNCQENH 210
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 24.3 bits (51), Expect = 2.5
Identities = 19/83 (22%), Positives = 35/83 (41%), Gaps = 7/83 (8%)
Query: 80 LVGISKAYAHNNEKDRSDFEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDIDDTKALEKFS 139
+ G S N KD +F + K ++ N L + + LE+ +
Sbjct: 1 MFGKSSNDTQENPKDALKSTNFHEKHTKPTETTELVEENKALTT-------EKERLEREN 53
Query: 140 KSLESEKENIQNSLHQWKKQLAE 162
K+L ++KEN+ + +KQ+ E
Sbjct: 54 KNLTADKENLTKEKTELQKQVNE 76
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 3/28 (10%)
Query: 128 DIDDTKALEKFSKSLESEKENIQNSLHQ 155
DI+D E ++K + +KENIQN L +
Sbjct: 185 DIEDE---EDYNKRFKIKKENIQNRLDE 209
>ref|NP_222813.1| putative [Helicobacter pylori J99]
Length = 368
Score = 23.9 bits (50), Expect = 3.2
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 60 IGDLESRLKSLKGMDKDAKELV--GISKAYAHNNEK---DRSDFEHFKSRLD 106
+G+ + L KD +L+ G A HN E +FEHFKS LD
Sbjct: 105 LGEEKFTTTLLTSPKKDPNQLIAKGQHIAQRHNLEFVVFRNDNFEHFKSELD 156
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 23.5 bits (49), Expect = 4.2
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 133 KALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQDVHDTSKI 192
KAL+ +KS + E I L K LAE L+K L L +K + KI
Sbjct: 13 KALKNHTKSDLALLEEIVVGL----KNLAEAIKLHKLNQVLAHVSLKVKKEVVLEILEKI 68
Query: 193 TPSRLQDLL 201
TP++ +L
Sbjct: 69 TPTKACSIL 77
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.5 bits (49), Expect = 4.2
Identities = 20/84 (23%), Positives = 33/84 (38%), Gaps = 11/84 (13%)
Query: 28 NGEKEENKEIQNLSENDEKIK-----------LAKQAKQDNLAIGDLESRLKSLKGMDKD 76
N EK E + L E +K L K+ + + G +ES+ K G D
Sbjct: 313 NAEKLAKLESEQLQSEQEFLKAKEQELKRKEALKKKLEHERGNAGHIESQTKIEVGEDIP 372
Query: 77 AKELVGISKAYAHNNEKDRSDFEH 100
+ I K+ NE++ D ++
Sbjct: 373 TQVQAQIPKSRVRLNEREIYDLDY 396
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 23.5 bits (49), Expect = 4.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 30 EKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAH 89
E KE S +EK +L ++ K+ E ++ + ++D KEL KA
Sbjct: 479 ENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEM 538
Query: 90 NNE 92
N +
Sbjct: 539 NKK 541
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 4.2
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 30 EKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAH 89
E KE S +EK +L ++ K+ E ++ + ++D KEL KA
Sbjct: 388 ESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEM 447
Query: 90 NNE 92
N +
Sbjct: 448 NKK 450
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 23.5 bits (49), Expect = 4.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 84 SKAYAHNNEKDRSDFEHFKSRLDKAIDSFNQKS 116
+K+Y NN K R +F + I +FN K+
Sbjct: 100 NKSYYENNAKGRINFSKTIKKNRPIIQTFNNKN 132
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (81%)
Query: 158 KQLAETNHLNKEYNTLD 174
KQL E +HL+KE ++L+
Sbjct: 6 KQLIEISHLDKEIDSLE 22
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 23.1 bits (48), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 62 DLESRLKSLKGMDKDAKELVGISKAYAH 89
D + + L +++ +E VGI KAY+H
Sbjct: 159 DASVKSEPLNHKNQEIQERVGIIKAYSH 186
>ref|NP_223409.1| putative [Helicobacter pylori J99]
Length = 79
Score = 22.7 bits (47), Expect = 7.2
Identities = 11/37 (29%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 126 NIDIDDTKALEKFSKS----LESEKENIQNSLHQWKK 158
++D+D +L++ LE EKE +Q+ +H+ K+
Sbjct: 37 SLDLDALLSLKEMIAQSIELLEKEKEELQSQMHKAKQ 73
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 22.7 bits (47), Expect = 7.2
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 25 HTKNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGIS 84
HT NG + K LS +D+ + +AK + + ++ G D S
Sbjct: 540 HTDNGVESLMK--YGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYGSD---------S 588
Query: 85 KAYAHNNEKDRSDFEHFKSRLDKAIDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLES 144
K F F + ID GN LK+ + +L++ +KSL
Sbjct: 589 KDMGGREIHQEGIFSKFNQVIANLIDG-----GNAKLKIYED-------SLDRDAKSLTK 636
Query: 145 EKENIQNSLHQWKKQLAE 162
+KEN Q L +AE
Sbjct: 637 DKENAQELLKTRYNIMAE 654
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 22.7 bits (47), Expect = 7.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 54 KQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAHNNEKDRSD 97
K+DNL++G L +L + D E+ + A + K D
Sbjct: 392 KKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRD 435
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.3 bits (46), Expect = 9.4
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 32 EENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAHNN 91
E+ +++ L EN ++ ++ KQ N + ++ KE + A+
Sbjct: 511 EDKEKLNVLIENSSTLE--RELKQKN-------------EHLENALKEQEDLKNAWLLEM 555
Query: 92 EKDRSDFEHFKSRLDKA 108
EK + F H K L+K+
Sbjct: 556 EKQKEIFHHKKLELEKS 572
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 22.3 bits (46), Expect = 9.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 133 KALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKE 169
K E F K + S E+ Q S+ Q + Q + N+E
Sbjct: 22 KEPESFLKPIISPIEDYQKSVRQIQAQFTDAPKFNEE 58
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.125 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,790
Number of Sequences: 1491
Number of extensions: 11568
Number of successful extensions: 61
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 38
length of query: 202
length of database: 494,079
effective HSP length: 73
effective length of query: 129
effective length of database: 385,236
effective search space: 49695444
effective search space used: 49695444
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 46 (22.3 bits)