BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644996|ref|NP_207166.1| hypothetical protein
[Helicobacter pylori 26695]
(133 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223730.1| putative [Helicobacter pylori J99] 259 2e-71
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 25 0.56
ref|NP_223129.1| DIHYDRODIPICOLINATE SYNTHASE [Helicobacter... 25 0.96
ref|NP_222764.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_222749.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223265.1| putative secretion/efflux abc transporter,... 23 3.6
ref|NP_223036.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223817.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 22 4.8
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 22 6.2
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 22 6.2
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 22 8.1
ref|NP_223721.1| putative [Helicobacter pylori J99] 22 8.1
ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helico... 22 8.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 22 8.1
>ref|NP_223730.1| putative [Helicobacter pylori J99]
Length = 182
Score = 259 bits (662), Expect = 2e-71
Identities = 126/133 (94%), Positives = 130/133 (97%)
Query: 1 MLNAIDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLICLG 60
+LNAID VINDGIIHDEYDIMTKSGVSFEVKTA+KGRTNNTFQFNGINPRYNYDFLICLG
Sbjct: 50 VLNAIDEVINDGIIHDEYDIMTKSGVSFEVKTAQKGRTNNTFQFNGINPRYNYDFLICLG 109
Query: 61 VCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEIT 120
VCEDQLLYRIFKKD+IHYIHKERKYFMKQNEFKKQLVPMNPDNQVN KLTLNLKELKEIT
Sbjct: 110 VCEDQLLYRIFKKDEIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNDKLTLNLKELKEIT 169
Query: 121 NLIKELERVLGLD 133
NLIKELER+L LD
Sbjct: 170 NLIKELERILELD 182
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.6 bits (57), Expect = 0.25
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 81 KERKYFMKQNEFKKQLVPMNPD--------NQVNYKLTLNLKELKEITNLIKELER 128
KE+ + NEFK + N N + +++ N +++K++ N IKELE+
Sbjct: 422 KEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEK 477
Score = 21.9 bits (45), Expect = 6.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 93 KKQLVPMNPDNQVNYKLTLNLKELKEITNLIKE 125
+++++ + + N+KL N E+ I +LIK+
Sbjct: 367 QQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKK 399
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 25.4 bits (54), Expect = 0.56
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 69 RIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEITNLIKELER 128
+I K +KI I K + ++ E K++ P Q NY + K+++ LIKE +R
Sbjct: 514 KIEKIEKIEKIEKGEEALAEKAEKKEK--EKAPPTQENYISIEDFKKVEIKVGLIKEAQR 571
Query: 129 V 129
+
Sbjct: 572 I 572
>ref|NP_223129.1| DIHYDRODIPICOLINATE SYNTHASE [Helicobacter pylori J99]
Length = 300
Score = 24.6 bits (52), Expect = 0.96
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 18 YDIMTKSGVSFEVKTARK 35
YD+ +++GVS EV TA K
Sbjct: 140 YDVPSRTGVSIEVPTALK 157
>ref|NP_222764.1| putative [Helicobacter pylori J99]
Length = 330
Score = 23.1 bits (48), Expect = 2.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 98 PMNPDNQVNYKL 109
P N DNQVN+KL
Sbjct: 111 PSNLDNQVNFKL 122
>ref|NP_222749.1| putative [Helicobacter pylori J99]
Length = 137
Score = 23.1 bits (48), Expect = 2.8
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 52 NYDFLICLGVCEDQLLYRIF 71
+YD L+ +G E LLYR+F
Sbjct: 100 DYDLLL-IGASESNLLYRLF 118
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 22.7 bits (47), Expect = 3.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 111 LNLKELKEITNLIKELERVLGL 132
L+++ L ++NL L+R++GL
Sbjct: 135 LHIRPLNYVSNLFFNLQRIIGL 156
>ref|NP_223036.1| putative [Helicobacter pylori J99]
Length = 134
Score = 22.7 bits (47), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 80 HKERKYFMKQNEFKKQLVPMNPDN 103
H ++F+K +FK ++V +N DN
Sbjct: 65 HARIEHFIKLVDFKGEIVFINEDN 88
>ref|NP_223817.1| putative [Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 4.8
Identities = 11/28 (39%), Positives = 14/28 (49%)
Query: 7 GVINDGIIHDEYDIMTKSGVSFEVKTAR 34
G + + IH E I K GV EVK +
Sbjct: 66 GKMQEAEIHSEIRIALKPGVKKEVKKGK 93
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 4.8
Identities = 8/28 (28%), Positives = 18/28 (63%), Gaps = 4/28 (14%)
Query: 71 FKKDKIHYIHKERKYFMKQNEFKKQLVP 98
+ K++++Y +Y++ N+FK +L P
Sbjct: 373 YDKNRVYY----DRYYLDYNDFKPKLYP 396
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 22.3 bits (46), Expect = 4.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 38 TNNTFQFNGINPRYNYDFLICLGVCEDQLLYRIFKKDKI 76
T +T + I+ YNY+ + + L Y + KDK+
Sbjct: 313 TYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKL 351
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 21.9 bits (45), Expect = 6.2
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 5 IDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNN 40
IDG N + D T+S + K K R N
Sbjct: 176 IDGETNTDDLSPASDAFTRSDIPLHAKAMLKNRIEN 211
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 21.9 bits (45), Expect = 6.2
Identities = 12/31 (38%), Positives = 15/31 (47%)
Query: 96 LVPMNPDNQVNYKLTLNLKELKEITNLIKEL 126
LVP Y L LNLK+ I + +EL
Sbjct: 104 LVPQKTAGDEAYLLALNLKQASVIVSEKREL 134
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 21.6 bits (44), Expect = 8.1
Identities = 8/23 (34%), Positives = 18/23 (77%)
Query: 105 VNYKLTLNLKELKEITNLIKELE 127
++YK +++++LKE+ +KEL+
Sbjct: 373 LSYKGMVSMQKLKELAPKMKELQ 395
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 21.6 bits (44), Expect = 8.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 108 KLTLNLKELKEITNLIKE 125
+L +LK +KE+ N IKE
Sbjct: 94 RLKKDLKNVKELRNYIKE 111
>ref|NP_223468.1| MOLYBDOPTERIN-SYNTHASE SULFURYLASE [Helicobacter pylori J99]
Length = 255
Score = 21.6 bits (44), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 87 MKQNEFKKQLVPMNPDNQV--NYKLT 110
+K +FKK P NPD +V +K+T
Sbjct: 223 IKTMDFKKIQAPKNPDCRVCGTHKIT 248
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 21.6 bits (44), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 15 HDEYDIMTKSGVSFEVKTARK 35
HD+ D ++K G+S E K +K
Sbjct: 968 HDKVDDLSKVGLSREQKLTQK 988
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.142 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,545
Number of Sequences: 1491
Number of extensions: 7860
Number of successful extensions: 33
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 18
length of query: 133
length of database: 494,079
effective HSP length: 69
effective length of query: 64
effective length of database: 391,200
effective search space: 25036800
effective search space used: 25036800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)