BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644999|ref|NP_207169.1| biotin carboxyl carrier
protein (fabE) [Helicobacter pylori 26695]
(156 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobac... 289 3e-80
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 28 0.15
ref|NP_222774.1| putative [Helicobacter pylori J99] 27 0.33
ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE... 26 0.57
ref|NP_222772.1| putative [Helicobacter pylori J99] 25 0.74
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 25 1.3
ref|NP_222830.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_224174.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 4.8
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 23 4.8
ref|NP_224099.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 22 8.2
ref|NP_223174.1| putative Outer membrane protein [Helicobac... 22 8.2
ref|NP_223025.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_222912.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 289 bits (739), Expect = 3e-80
Identities = 148/161 (91%), Positives = 152/161 (93%), Gaps = 5/161 (3%)
Query: 1 MNLSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAYAK-KSALNPAHSPAPI----MV 55
MNLSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAY K K+ALN AHS API MV
Sbjct: 1 MNLSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAYTKHKNALNSAHSSAPIQAPIMV 60
Query: 56 EASMPSVQTPVPMVCTPIVDKKEDFVLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGI 115
EAS+PSVQTPVPMVCTPIVDKKEDFVLSPMVGTFYHAPSPGAEPYVK GDTLKKGQI+GI
Sbjct: 61 EASIPSVQTPVPMVCTPIVDKKEDFVLSPMVGTFYHAPSPGAEPYVKVGDTLKKGQIIGI 120
Query: 116 VEAMKIMNEIEVEYPCKVVSVEVGDAQPVEYGTKLIKVEKL 156
VEAMKIMNEIEVEYPCKVVS+EVGDAQPVEYGTKLIKVEKL
Sbjct: 121 VEAMKIMNEIEVEYPCKVVSIEVGDAQPVEYGTKLIKVEKL 161
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 27.7 bits (60), Expect = 0.15
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 74 VDKKEDFVLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQI--VGIVEAMKIMNEIEVEYPC 131
V K+ DFV P +G S G + K+G K + ++EAM+++ E ++
Sbjct: 172 VAKQNDFVACPKIGIRIRLHSAGTGVWAKSGGINSKFGLSSTEVLEAMRLLEENDLLEHF 231
Query: 132 KVVSVEVG 139
++ +G
Sbjct: 232 HMIHFHIG 239
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.6 bits (57), Expect = 0.33
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 5 EIEELIKEFKASDLGHLKLKHEHFELVLDKESAYAKKSALNPAH 48
+I EL KE KA + KL H+ L +++S +++ L AH
Sbjct: 154 KITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAH 197
>ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE [Helicobacter pylori
J99]
Length = 340
Score = 25.8 bits (55), Expect = 0.57
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 20 HLKLKHEHFELVLDKESAYAKKSALNPAHSPAPI 53
HLKLK E E+++D+ A+ + A A PI
Sbjct: 262 HLKLKVEEREILIDELGAFKEAGACGTAAIITPI 295
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.4 bits (54), Expect = 0.74
Identities = 14/41 (34%), Positives = 23/41 (55%)
Query: 4 SEIEELIKEFKASDLGHLKLKHEHFELVLDKESAYAKKSAL 44
+E EL++E KA +L+ E+ L DKE+ +K+ L
Sbjct: 30 TETTELVEENKALTTEKERLERENKNLTADKENLTKEKTEL 70
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 24.6 bits (52), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 11 KEFKASDLGHLKLKHEHFELVLDKESAYAKKSALN 45
+EF SD + K + + F + +K Y KK+ LN
Sbjct: 119 REFATSDPDYTKFEQQFFIDLWEKGLIYRKKAMLN 153
>ref|NP_222830.1| putative [Helicobacter pylori J99]
Length = 308
Score = 23.9 bits (50), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
Query: 126 EVEYPCKVVSVEVGDAQPVEYGTKLIKVEKL 156
+ Y C + E+G A+P+E ++IKVE L
Sbjct: 32 QCNYNC--IYCELGKAKPIERMEEVIKVETL 60
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 23.1 bits (48), Expect = 3.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 101 VKAGDTLKKGQIVG 114
VK G+ +KKGQ++G
Sbjct: 225 VKTGEFVKKGQLIG 238
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.7 bits (47), Expect = 4.8
Identities = 18/71 (25%), Positives = 30/71 (41%)
Query: 22 KLKHEHFELVLDKESAYAKKSALNPAHSPAPIMVEASMPSVQTPVPMVCTPIVDKKEDFV 81
K+ E+ L K S KK L +S +V + ++ P+ + IVD++ DF
Sbjct: 175 KVFKENLGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFS 234
Query: 82 LSPMVGTFYHA 92
Y+A
Sbjct: 235 YKSQQSPMYNA 245
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 22.7 bits (47), Expect = 4.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 2 NLSEIEELIKEFKASDLGHL 21
++ E+ +L+K F SDL HL
Sbjct: 316 SVQELLKLLKPFSFSDLSHL 335
>ref|NP_224099.1| putative [Helicobacter pylori J99]
Length = 329
Score = 22.3 bits (46), Expect = 6.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 100 YVKAGDTLKKGQIV 113
+VK GD +KKG +V
Sbjct: 61 FVKKGDRIKKGDLV 74
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 21.9 bits (45), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 99 PYVKAGDTLKKGQIV 113
P VK GD ++ GQI+
Sbjct: 779 PIVKVGDKVEAGQII 793
>ref|NP_223174.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 406
Score = 21.9 bits (45), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 101 VKAGDTLKKGQIVGIV 116
+K G +KKGQI+G V
Sbjct: 317 LKKGSFVKKGQIIGRV 332
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 21.9 bits (45), Expect = 8.2
Identities = 14/51 (27%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Query: 108 KKGQIVGIVEAMK---IMNEIEVEYPCKVVSVEVGDAQPVEYGTKLIKVEK 155
K + G VE K + E+E + + E + +P++ T+ IK EK
Sbjct: 212 KDDETQGSVEPPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEK 262
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.9 bits (45), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 LSEIEELIKEFKASDLGHLKLKHEHFELVLDKESAY 38
L ++EEL K FK +D K E +++ + + Y
Sbjct: 173 LKKLEELDKIFKTTDFTKFTPKTEIKDIIKEIDEKY 208
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,166
Number of Sequences: 1491
Number of extensions: 6417
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 15
length of query: 156
length of database: 494,079
effective HSP length: 71
effective length of query: 85
effective length of database: 388,218
effective search space: 32998530
effective search space used: 32998530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)