BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645000|ref|NP_207170.1| deoxycytidine triphosphate
deaminase (dcd) [Helicobacter pylori 26695]
(190 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Heli... 381 e-108
ref|NP_223965.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 23 5.0
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 23 5.0
ref|NP_222885.1| putative restriction enzyme [Helicobacter ... 23 6.6
>ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Helicobacter pylori J99]
Length = 188
Score = 381 bits (978), Expect = e-108
Identities = 185/188 (98%), Positives = 188/188 (99%)
Query: 3 MGLKADSWIKKMSLEHGMISPFCEKQVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALID 62
MGLKADSWIKKMSLEHGMI+PFCEKQVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALID
Sbjct: 1 MGLKADSWIKKMSLEHGMINPFCEKQVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALID 60
Query: 63 PKNFDPNNATKIDASKEGYFILPANAFALAHTIEYFKMPKDTLAICLGKSTYARCGIIVN 122
PKNFDPNNATKIDASKEG+FILPANAFALAHTIEYFKMPKDTLAICLGKSTYARCGIIVN
Sbjct: 61 PKNFDPNNATKIDASKEGFFILPANAFALAHTIEYFKMPKDTLAICLGKSTYARCGIIVN 120
Query: 123 VTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVFLQGDEMCEQSYKDRGGKYQGQVG 182
VTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVFLQGDE+CEQSYKDRGGKYQGQVG
Sbjct: 121 VTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVFLQGDEVCEQSYKDRGGKYQGQVG 180
Query: 183 ITLPKILK 190
ITLPKILK
Sbjct: 181 ITLPKILK 188
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.8 bits (55), Expect = 0.77
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 28 QVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALIDPKNFDPNNATKI 74
++ KN + LSS Y + E +N+ I PKNF+ NN ++
Sbjct: 193 EIEKNDLEVALSSSHYSM---GELTFKENEILSIAPKNFEFNNEQEL 236
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 23.1 bits (48), Expect = 5.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 73 KIDASKEGYFILPANAFALAHTIEY 97
+++ +EGY IL ANA + IE+
Sbjct: 518 EMNHKQEGYIILKANALVDSEIIEW 542
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.1 bits (48), Expect = 5.0
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 104 TLAICLGKSTYARCGIIVNVTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVF 159
T++ G+ Y GI +E E E +E+SN K+Y N G + F
Sbjct: 460 TVSCAEGEEGYVYAGI------YEHEIE---RVELSNMQETQTKIYINIGNPEKAF 506
>ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/55 (23%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Query: 15 SLEHGMISPFCEKQVGKNVISYGLSSYGYDIRVGSEFMLFDNKNALIDPKNFDPN 69
+L+ G I+ GKN+I YG+ G + ++ N++++ F P+
Sbjct: 136 TLDDGKINESVRIDGGKNIILYGVPGSGKSYTLQRDYC----NNSVVEKIVFHPD 186
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,990
Number of Sequences: 1491
Number of extensions: 9812
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 494,079
effective HSP length: 73
effective length of query: 117
effective length of database: 385,236
effective search space: 45072612
effective search space used: 45072612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)