BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645001|ref|NP_207171.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(700 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223725.1| putative outer membrane protein [Helicobac... 1083 0.0
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 847 0.0
ref|NP_223588.1| putative outer membrane protein [Helicobac... 719 0.0
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 707 0.0
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 60 2e-10
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 56 4e-09
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 52 7e-08
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 51 9e-08
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 49 3e-07
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 49 3e-07
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 49 6e-07
ref|NP_223820.1| putative Outer membrane function [Helicoba... 46 3e-06
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 45 5e-06
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 45 6e-06
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 45 6e-06
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 45 8e-06
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 45 8e-06
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 45 8e-06
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 44 1e-05
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 44 1e-05
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 44 1e-05
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 43 2e-05
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 40 2e-04
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 39 4e-04
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 37 0.002
ref|NP_223089.1| putative [Helicobacter pylori J99] 37 0.002
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 32 0.054
ref|NP_224078.1| putative Outer membrane protein [Helicobac... 29 0.35
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 29 0.35
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 28 0.60
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 28 1.0
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 1.8
ref|NP_223088.1| putative [Helicobacter pylori J99] 27 1.8
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 27 2.3
ref|NP_222814.1| putative [Helicobacter pylori J99] 27 2.3
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 26 3.0
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 26 3.9
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 5.1
ref|NP_222775.1| putative [Helicobacter pylori J99] 25 5.1
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 25 6.7
ref|NP_223714.1| putative [Helicobacter pylori J99] 25 8.7
ref|NP_222781.1| putative [Helicobacter pylori J99] 25 8.7
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 1083 bits (2802), Expect = 0.0
Identities = 566/753 (75%), Positives = 606/753 (80%), Gaps = 55/753 (7%)
Query: 1 MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGTQTKEEVIT-----TQ 55
MLR VSKTICLSLI LFNPLEAFQKHQKD FF+EAGFETGLLEG QTKE+ I TQ
Sbjct: 1 MLRLVSKTICLSLISLFNPLEAFQKHQKDVFFVEAGFETGLLEGAQTKEQAIAQNTQNTQ 60
Query: 56 KIYENPLTHPQTKEQPKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDKIE-NGLT 114
KIYENPLTHPQTKEQPKEQNKSDTATPQS YG+YYI Q+TIL+ AT LFT I NGLT
Sbjct: 61 KIYENPLTHPQTKEQPKEQNKSDTATPQSVYGRYYILQNTILEKATELFTAANINGNGLT 120
Query: 115 FYSQNPVYANMVNGS------------VTIQNFLPYNLNNVELSFKDAQGKVVNLGVIET 162
FYSQNPVY N V IQNFLPYNLNN+ELS+ DAQGK VNLGVIET
Sbjct: 121 FYSQNPVYVMAYNKDNAEFEGYGNNSVVVIQNFLPYNLNNIELSYTDAQGKAVNLGVIET 180
Query: 163 IPKQSQITLPASLFNDSEFEQADSFN---YQQLQATATQFSDANTQSLFQKLSKITTNVT 219
IPK SQI LPASLFN+ F FN QQLQ T T FSDANTQSLF+KLS+ITTN+
Sbjct: 181 IPKDSQIILPASLFNN--FSNDSPFNSDGLQQLQTTTTPFSDANTQSLFEKLSQITTNLQ 238
Query: 220 MSYENADT----NN-----------------FKGNCHDCVSDFTPQTAEELTNLMLDMIA 258
M+YEN D NN +K +C FTPQTAEELTNLMLDMIA
Sbjct: 239 MTYENTDPFSSGNNDPNGPLASPKPHYECPGYKKSCQVASVSFTPQTAEELTNLMLDMIA 298
Query: 259 VFDSKSWEEAVLNAPFQFSNSSSECGSDFPKCVNPFNNGRVAPIYEKYVLTPQSVIDAFR 318
VFDSKSWEEAVLNAPFQFSNS SECG D+PKCVNPFNNG V P EKY LTP+ VI+++R
Sbjct: 299 VFDSKSWEEAVLNAPFQFSNSPSECGIDYPKCVNPFNNGLVDPKDEKYALTPEEVINSYR 358
Query: 319 RTINLEVNILKS--GFVGLGYEL-------DD--NDGNLGIEASALNPEKLFGKTLNKVD 367
L VN+L + GF+GLG +L DD N G LGI AL+PEKLFGK LNKV
Sbjct: 359 VANELTVNLLNAAKGFLGLGSQLGSANAPDDDGFNQGVLGIAPFALDPEKLFGKNLNKVA 418
Query: 368 IVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKEELKFTNG 427
I+ LRDIIHE+ HT GYTHNGNMTYQRVRLCQE G CEGG E NGKEEL+F+NG
Sbjct: 419 ILALRDIIHEYGHTLGYTHNGNMTYQRVRLCQEGNGPEARCEGGHEVEKNGKEELEFSNG 478
Query: 428 KEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA 487
EV+D DGYTYDVCS + +Q SNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA
Sbjct: 479 HEVRDHDGYTYDVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNA 538
Query: 488 LPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV 547
LPINFANLNS T+HLNAGLNAQNFATS+VSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV
Sbjct: 539 LPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNV 598
Query: 548 KIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQDNPT 607
KIGYQHYFNDYIGLAYYGII+YNYA+ NDEKIQQLSYGGGMDVLFDFITTY NKKQD+PT
Sbjct: 599 KIGYQHYFNDYIGLAYYGIIQYNYAQANDEKIQQLSYGGGMDVLFDFITTYTNKKQDHPT 658
Query: 608 KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQSG 667
KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYS+G+SVPLIQSG
Sbjct: 659 KKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSIGVSVPLIQSG 718
Query: 668 IKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF 700
IKIASNNGIYA+SVVLNEGGSHFKVFFNYGW+F
Sbjct: 719 IKIASNNGIYADSVVLNEGGSHFKVFFNYGWVF 751
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 847 bits (2188), Expect = 0.0
Identities = 462/762 (60%), Positives = 553/762 (71%), Gaps = 80/762 (10%)
Query: 1 MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGTQTKEEVITTQKIYEN 60
ML+ SKTICLSLI F +EAFQKHQKDGFFIEAGFETGLL+GTQT+E+ I T
Sbjct: 1 MLKLASKTICLSLISSFTAVEAFQKHQKDGFFIEAGFETGLLQGTQTQEQTIAT------ 54
Query: 61 PLTHPQTKEQPKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDKIENGLTFYSQNP 120
T+E+PK + K TPQS YGKYYI QSTILKNAT LF D I N LTFYSQNP
Sbjct: 55 ------TQEKPKPKPKPKPITPQSTYGKYYISQSTILKNATELFAEDNITN-LTFYSQNP 107
Query: 121 VYANMVNGS------------VTIQNFLPYNLNNVELSFKDAQGKVVNLGVIETIPKQSQ 168
VY N + IQNFLPYNLNN+ELS+ D QG VV+LGVIETIPKQSQ
Sbjct: 108 VYVTAYNQESAEEAGYGNNSLIMIQNFLPYNLNNIELSYTDDQGNVVSLGVIETIPKQSQ 167
Query: 169 ITLPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFQKLSKITTNVTMSYENAD-- 226
I LPASLFND + AD F QQLQ T+FSDA+TQ+LF KLSK+TTN+ M+Y N +
Sbjct: 168 IILPASLFNDPQLN-ADGF--QQLQTNTTRFSDASTQNLFNKLSKVTTNLQMTYINYNQF 224
Query: 227 -TNNFKG------------NCHDCVSDFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAP 273
+ N G NC V FT Q A+ LTNLML+M+AVFDSKSWE+AVLNAP
Sbjct: 225 SSGNGSGSKPPCPPYENQANCVAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAVLNAP 284
Query: 274 FQFS--NSSSECGSDFPKCVNPFNNGRVAPIY------EKY----------VLTPQSVID 315
FQFS N S+ C SD+ CVNP+N+G V P ++Y +LTPQ VI
Sbjct: 285 FQFSDNNLSAPCYSDYLTCVNPYNDGLVDPKLIAKNKGDEYNIENGQTGSVILTPQDVIY 344
Query: 316 AFRRTINLEVNIL--KSGFVGLGYEL-------DD--NDGNLGIEASALNPEKLFGKTLN 364
++R N+ VN+L + G +GLG + DD N G LGI + L+PE LFGK LN
Sbjct: 345 SYRVANNIYVNLLPTRGGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFGKELN 404
Query: 365 KVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKEELKF 424
KV I++LRDIIHE+ HT GYTHNGNMTYQRVR+C+EN G + C+GG+ E V+GKE F
Sbjct: 405 KVAIMQLRDIIHEYGHTLGYTHNGNMTYQRVRMCEENNGPEERCQGGRIEQVDGKEVQVF 464
Query: 425 TNGKEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYTNCAQVPAGLIGVTTAVWQQLIN 484
NG EV+D DG TYDVCS +KD + YTA +YPNSIYT+C+QVPAGLIGVT+AVWQQLI+
Sbjct: 465 DNGHEVRDTDGSTYDVCSRFKD--KPYTAGSYPNSIYTDCSQVPAGLIGVTSAVWQQLID 522
Query: 485 QNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTT--STTTYRSS--SKNFRS 540
QNALP++F NL+S TN+LNA LN Q+FAT+++SAI+Q+ S++ S TTYR+S S+ F +
Sbjct: 523 QNALPVDFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGA 582
Query: 541 PILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYAN 600
P+LGVN+K+GYQ YFNDY+GL+ YGIIKYNYA+ N+EKIQQLSYG GMDVLFDFIT Y N
Sbjct: 583 PLLGVNLKMGYQKYFNDYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDVLFDFITNYTN 642
Query: 601 KK--QDNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVG 658
+K + N TKKVF SS GVFGGLRGLYNSYY+ NQ KGSGNL++ G NYRYKHSKYS+G
Sbjct: 643 EKNPKSNLTKKVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSIG 702
Query: 659 ISVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF 700
ISVPL+Q +I S++G Y NS+ LNEGGSHFKVFFNYGWIF
Sbjct: 703 ISVPLVQLKSRIVSSDGAYTNSITLNEGGSHFKVFFNYGWIF 744
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 719 bits (1855), Expect = 0.0
Identities = 394/708 (55%), Positives = 488/708 (68%), Gaps = 72/708 (10%)
Query: 16 LFNPLEAFQKHQKDGFFIEAGFETGLLEGTQTKEEVITTQKIYENPLTHPQTKEQPKEQN 75
LF+ LEA ++K+GFFIEAGFETGLLEGTQT+E+ TT K
Sbjct: 10 LFSALEA---NEKNGFFIEAGFETGLLEGTQTQEKRHTTTK------------------- 47
Query: 76 KSDTATPQSAYGKY-YIPQSTILKNATALFTTDKIENGLTFYSQNPVYA-NMVNGSVTIQ 133
+ Y Y Y+P TILK A LFT + + L F S +PV M NG +TI+
Sbjct: 48 --------NTYATYNYLPTDTILKRAANLFTNAEAISKLKFSSLSPVRVLYMYNGQLTIE 99
Query: 134 NFLPYNLNNVELSFKDAQGKVVNLGVIETIPKQSQITLPASLFNDSE--FEQADSFNY-- 189
NFLPYNLNNV+LSF DAQG ++LGVIETIPK S+I LP F+ + F++ D +
Sbjct: 100 NFLPYNLNNVKLSFTDAQGNTIDLGVIETIPKHSKIVLPGEAFDSLKEAFDKIDPYTLFL 159
Query: 190 QQLQATATQFSDANTQSLFQKLSKITTNVTMSYENADTNNFK-------GNC-HDCVSDF 241
+ +AT+T SD NTQ +F+ L+ I TN+ M Y N + NNF GN +DC +F
Sbjct: 160 PKFEATSTSISDTNTQRVFETLNNIKTNLIMKYSNENPNNFNTCPYNNNGNTKNDCWQNF 219
Query: 242 TPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSSSECGSDFPKCVNPFNNGRV-A 300
TPQTAEE TNLML+MIAV DS+SW +A+LNAPF+F+NSS++C SD KCVNP NGRV
Sbjct: 220 TPQTAEEFTNLMLNMIAVLDSQSWGDAILNAPFEFTNSSTDCDSDPSKCVNPGVNGRVDT 279
Query: 301 PIYEKYVLTPQSVIDAFRRTINLEVNILK-SGFVGL--GYELDDNDGNLGIEASALNPEK 357
+ ++Y+L Q +I+ FR+ I ++ +LK SG VGL GY D G LG+EA AL+P+K
Sbjct: 280 KVDQQYILNKQGIINNFRKKIEIDAVVLKNSGVVGLANGYGNDGEYGTLGVEAYALDPKK 339
Query: 358 LFGKTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVN 417
LFG L +++ +LR I+HEFSHTKGY HNGNMTYQRV + ++
Sbjct: 340 LFGNDLKTINLEDLRTILHEFSHTKGYGHNGNMTYQRVPVTKD----------------- 382
Query: 418 GKEELKFTNGKEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYTNCAQVPAGLIGVTTA 477
G+ E K +NGK KD DG Y+VCS Y ++Q SNYPNSIY NCA VPAG +GVT A
Sbjct: 383 GQVE-KDSNGKP-KDSDGLPYNVCSLYGGSNQPAFPSNYPNSIYHNCADVPAGFLGVTAA 440
Query: 478 VWQQLINQNALPINFANLNSPTNH-LNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSS-- 534
VWQQLINQNALPIN+ANL S TN+ LNA LN Q+ A S++S I + F T+S T + S
Sbjct: 441 VWQQLINQNALPINYANLGSQTNYNLNASLNTQDLANSMLSTIQKTFVTSSVTNHHFSNA 500
Query: 535 SKNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDF 594
S++FRSPILGVN KIGYQ+YFND+IGLAYYGIIKYNYAK ++K+QQLSYGGG+D+L DF
Sbjct: 501 SQSFRSPILGVNAKIGYQNYFNDFIGLAYYGIIKYNYAKAVNQKVQQLSYGGGIDLLLDF 560
Query: 595 ITTYANKKQDN--PTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKH 652
ITTY+NK TK+ F+SSFG+FGGLRGLYNSYYV N+VKGSGNLD+ TG NYRYKH
Sbjct: 561 ITTYSNKNSPTGIQTKRNFSSSFGIFGGLRGLYNSYYVLNKVKGSGNLDVATGLNYRYKH 620
Query: 653 SKYSVGISVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF 700
SKYSVGIS+PLIQ + S+ G Y NS V NEG SHFKVFFNYGW+F
Sbjct: 621 SKYSVGISIPLIQRKASVVSSGGDYTNSFVFNEGASHFKVFFNYGWVF 668
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 707 bits (1825), Expect = 0.0
Identities = 389/701 (55%), Positives = 488/701 (69%), Gaps = 69/701 (9%)
Query: 16 LFNPLEAFQKHQKDGFFIEAGFETGLLEGTQTKEEVITTQKIYENPLTHPQTKEQPKEQN 75
LF+ LEA ++K+GFFIEAGFETGLLEGTQT+E+ TT K
Sbjct: 10 LFSALEA---NEKNGFFIEAGFETGLLEGTQTQEKRHTTTK------------------- 47
Query: 76 KSDTATPQSAYGKY-YIPQSTILKNATALFTTDKIENGLTFYSQNPVYA-NMVNGSVTIQ 133
+ Y Y Y+P TILK A LFT + + L F S +PV M NG +TI+
Sbjct: 48 --------NTYATYNYLPTDTILKRAANLFTNAEAISKLKFSSLSPVRVLYMYNGQLTIE 99
Query: 134 NFLPYNLNNVELSFKDAQGKVVNLGVIETIPKQSQITLPASLFNDSEFEQADSFNYQQLQ 193
NFLPYNLNNV+LSF DAQG V++LGVIETIPK S+I LP F+ + + F +++
Sbjct: 100 NFLPYNLNNVKLSFTDAQGNVIDLGVIETIPKHSKIVLPGEAFDSLKIDPYTLF-LPKIE 158
Query: 194 ATATQFSDANTQSLFQKLSKITTNVTMSYENADTNNFKGNCHDCVSDFTPQTAEELTNLM 253
AT+T SDANTQ +F+ L+KI TN+ ++Y N N FK + + + FTPQTAEE TNLM
Sbjct: 159 ATSTSISDANTQRVFETLNKIKTNLVVNYRNE--NKFKDHENHWEA-FTPQTAEEFTNLM 215
Query: 254 LDMIAVFDSKSWEEAVLNAPFQFSNSSSECGSDFPKCVNPFNNGRV-APIYEKYVLTPQS 312
L+MIAV DS+SW +A+LNAPF+F+NS ++C +D KCVNP NG V + + +KYVL Q
Sbjct: 216 LNMIAVLDSQSWGDAILNAPFEFTNSPTDCDNDPSKCVNPGTNGLVNSKVDQKYVLNKQD 275
Query: 313 VIDAFRRTINLEVNILK-SGFVGLGYEL--DDND-----GNLGIEASALNPEKLFGKTLN 364
+++ F+ +L+V +LK SG VGLG ++ +ND G LG+ ASAL+P+KLFG L
Sbjct: 276 IVNKFKNKADLDVIVLKDSGVVGLGSDITPSNNDDGKHYGQLGVVASALDPKKLFGDNLK 335
Query: 365 KVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKEELKF 424
+++ +LR I+HEFSHTKGY HNGNMTYQRV + ++ G+ E K
Sbjct: 336 TINLEDLRTILHEFSHTKGYGHNGNMTYQRVPVTKD-----------------GQVE-KD 377
Query: 425 TNGKEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYTNCAQVPAGLIGVTTAVWQQLIN 484
+NGK KD DG Y+VCS Y ++Q SNYPNSIY NCA VPAG +GVT AVWQQLIN
Sbjct: 378 SNGKP-KDSDGLPYNVCSLYGGSNQPAFPSNYPNSIYHNCADVPAGFLGVTAAVWQQLIN 436
Query: 485 QNALPINFANLNSPTNH-LNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSS--SKNFRSP 541
QNALPIN+ANL S TN+ LNA LN Q+ A S++S I + F T+S T + S S++FRSP
Sbjct: 437 QNALPINYANLGSQTNYNLNASLNTQDLANSMLSTIQKTFVTSSVTNHHFSNASQSFRSP 496
Query: 542 ILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANK 601
ILGVN KIGYQ+YFND+IGLAYYGIIKYNYAK ++K+QQLSYGGG+D+L DFITTY+NK
Sbjct: 497 ILGVNAKIGYQNYFNDFIGLAYYGIIKYNYAKAVNQKVQQLSYGGGIDLLLDFITTYSNK 556
Query: 602 KQDN--PTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGI 659
TK+ F+SSFG+FGGLRGLYNSYYV N+VKGSGNLD+ TG NYRYKHSKYSVGI
Sbjct: 557 NSPTGIQTKRNFSSSFGIFGGLRGLYNSYYVLNKVKGSGNLDVATGLNYRYKHSKYSVGI 616
Query: 660 SVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF 700
S+PLIQ + S+ G Y NS V NEG SHFKVFFNYGW+F
Sbjct: 617 SIPLIQRKASVVSSGGDYTNSFVFNEGASHFKVFFNYGWVF 657
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 59.7 bits (143), Expect = 2e-10
Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 63/251 (25%)
Query: 482 LINQNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTST-------TTYRSS 534
+IN + NL + N + N++ F S+VS + ++S T TT
Sbjct: 244 VINDTISYLKGDNLETIYNTIQKTPNSKGFQ-SLVSRSSYSYSLNETQYSQFQTTTKEFG 302
Query: 535 SKNFRSPIL-----------GVNVKIGYQHYF--NDYIGLAYYGIIKYNYA--KTN--DE 577
FRS L GV V++GY+ +F N + G+ YYG YNYA K+N +
Sbjct: 303 HNPFRSVGLINSQSNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNS 362
Query: 578 KIQQLSYGGGMDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGS 637
+YG G D+L +FI +++ +KV SFG+FGG+ L + ++ NQ S
Sbjct: 363 ASNVFTYGAGSDLLLNFINGGSDR-----NRKV---SFGIFGGI-ALAGTTWLNNQ---S 410
Query: 638 GNLDIV------------------TGFNYRYKHSKYSVGISVPLIQS------GIKIASN 673
NL I TG + H +G+ +P I + G K+A
Sbjct: 411 ANLKITNSAYSAKINNTNFQFLFNTGLRLQGIHHGIELGVKIPTINTNYYSFMGAKLAYR 470
Query: 674 N--GIYANSVV 682
+Y N V+
Sbjct: 471 RLYSLYLNYVL 481
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 55.8 bits (133), Expect = 4e-09
Identities = 141/658 (21%), Positives = 233/658 (34%), Gaps = 105/658 (15%)
Query: 5 VSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETG----LLEGTQTKEEVITTQKIYEN 60
+ KT+ LSL + + +GFFI AG++ G +++ T +++ T + N
Sbjct: 1 MKKTLLLSLSA-----SSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSN 55
Query: 61 PLTHPQTKEQ-------PKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDKIENGL 113
LT+ Q P E N + + G I + T A++ GL
Sbjct: 56 LLTNFNNLNQAVTNASSPSEINAAIDNLKANTQG--LIGEKTNSPAYQAVYLALNAAVGL 113
Query: 114 ---TFYSQNPVYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVIETIPKQSQI- 169
Y+ N SVT + +N +++ + V IE K +Q
Sbjct: 114 WNVIAYNVQCGPGNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAY 173
Query: 170 -TLPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFQKLSKITTNVTMSYENADTN 228
T+ +L DS F DS Q TQ + AN S+ TT T
Sbjct: 174 QTIQQALKQDSGFPVLDSAGKQVTITITTQTNGANK-------SETTTTTT--------- 217
Query: 229 NFKGNCHDCVSDFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSSSECGSDFP 288
T A+ L MI+V + N P+ N G+ +
Sbjct: 218 -------------TTNDAQTLLQEASKMISVLTT--------NCPWVNHNQGQNGGAPW- 255
Query: 289 KCVNPFNNGRVAPIYEKYVLTPQSVIDAFRRTINLEVNILKSGFVGLGYELDD-NDGNLG 347
G V ++ S+I + + ++ + + + +
Sbjct: 256 ---GLDTAGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNQQNNQNAPQDFNPYTSADRA 312
Query: 348 IEASALNPEKLFGKTLNKVDIV--ELRDIIHEF-SHTKGYTHNGNMTYQRVRLCQENGGA 404
+ LN + K L D + +L I +F ++ HNG T + GA
Sbjct: 313 FAQNMLNHAQAQAKILELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGA 372
Query: 405 IQECEGGKEELVNGKEELKF--TNGKEVKDQDGYTYDVCSFYKDNHQVYTASNYPNSIYT 462
C +E + L T +++K + + F + +N NSI T
Sbjct: 373 --GCAYVEETITALNNSLAHFGTQAEQIKQSELLARTILDF---RGSLSNLNNTYNSITT 427
Query: 463 NCAQVPAGLIGVTTAVWQQLINQNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQN 522
+ P + + LI+Q+ P N L + +N Q+ + ++SA +
Sbjct: 428 TASNTP------NSPFLKNLISQSTNPNNPGGLQA-VYQVN-----QSAYSQLLSATQEL 475
Query: 523 FSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQ 580
SS+ + G+ V++GY+ +F + GL YYG YN+A
Sbjct: 476 GHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFN 535
Query: 581 QLS----YGGGMDVLFDFITTYANKKQDNPTKKVFASSFGVFGGL----RGLYNSYYV 630
S YG G DVL++FI ++ T K SFGVFGG+ NS YV
Sbjct: 536 SASDVFTYGVGTDVLYNFI--------NDKTTKNSKISFGVFGGIALAGTSWLNSQYV 585
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 51.6 bits (122), Expect = 7e-08
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 517 SAIAQNFSTTSTTTYRS----SSKNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIKYN 570
S ++Q + S ++ SS+N + G+ V++GY+ +F + GL YYG YN
Sbjct: 448 SNLSQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYN 507
Query: 571 YAKTNDEKIQQLS----YGGGMDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLR 622
+ S YGGG D+L +FI D+ T+K S G+FGG++
Sbjct: 508 HGYIKSSFFNSSSDIWTYGGGSDLLVNFI-------NDSITRKNNKLSVGLFGGIQ 556
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 51.2 bits (121), Expect = 9e-08
Identities = 32/95 (33%), Positives = 48/95 (49%), Gaps = 13/95 (13%)
Query: 534 SSKNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQQLS----YGGG 587
SS+N + G+ V++GY+ +F + GL YYG YN+ S YGGG
Sbjct: 456 SSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGG 515
Query: 588 MDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLR 622
D+L +FI D+ T+K S G+FGG++
Sbjct: 516 SDLLVNFI-------NDSITRKNNKLSVGLFGGIQ 543
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 49.3 bits (116), Expect = 3e-07
Identities = 46/161 (28%), Positives = 68/161 (41%), Gaps = 21/161 (13%)
Query: 494 NLNSPTNHLNAGLNAQNF--ATSIVSAIAQN-FSTTSTTTYRSSSKNFRSPILGVNVKIG 550
N NSP L L+ + ++ + +N F Y++++ + G+ V+ G
Sbjct: 472 NPNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNN----GAMNGIGVQAG 527
Query: 551 YQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQQLS----YGGGMDVLFDFITTYANKKQD 604
Y+ +F GL YYG YN+A S YG GMD L++FI N K
Sbjct: 528 YKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFI----NDKNT 583
Query: 605 NPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTG 645
N K S G+FGG S+ QV NL ++ G
Sbjct: 584 NFLGKNNKLSVGLFGGFALAGTSWLNSQQV----NLTMMNG 620
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 491 NFANLNSPTNHLNAGLNAQNFATSIVSAIAQ-NFSTTSTTTYRSSSKNFRSPILGVNVKI 549
N +NL + N+LN+ +N + ++I AI + S + T+ ++S +++ L +N +
Sbjct: 56 NLSNLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAV 115
Query: 550 G 550
G
Sbjct: 116 G 116
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 49.3 bits (116), Expect = 3e-07
Identities = 46/161 (28%), Positives = 68/161 (41%), Gaps = 21/161 (13%)
Query: 494 NLNSPTNHLNAGLNAQNF--ATSIVSAIAQN-FSTTSTTTYRSSSKNFRSPILGVNVKIG 550
N NSP L L+ + ++ + +N F Y++++ + G+ V+ G
Sbjct: 472 NPNSPEGLLTYSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNN----GAMNGIGVQAG 527
Query: 551 YQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQQLS----YGGGMDVLFDFITTYANKKQD 604
Y+ +F GL YYG YN+A S YG GMD L++FI N K
Sbjct: 528 YKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFI----NDKNT 583
Query: 605 NPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTG 645
N K S G+FGG S+ QV NL ++ G
Sbjct: 584 NFLGKNNKLSVGLFGGFALAGTSWLNSQQV----NLTMMNG 620
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 491 NFANLNSPTNHLNAGLNAQNFATSIVSAIAQ-NFSTTSTTTYRSSSKNFRSPILGVNVKI 549
N +NL + N+LN+ +N + ++I AI + S + T+ ++S +++ L +N +
Sbjct: 56 NLSNLLNQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAV 115
Query: 550 G 550
G
Sbjct: 116 G 116
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 48.5 bits (114), Expect = 6e-07
Identities = 68/288 (23%), Positives = 110/288 (37%), Gaps = 44/288 (15%)
Query: 337 YELDDNDGNLGIEASALNPEKLFGKTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVR 396
Y + N N+ + + LN +F +NK + S T G T + TY +
Sbjct: 158 YGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTATANSTSSTSGATGSDGQTYSQQ- 216
Query: 397 LCQENGGAIQECEGGKEELVNGKEELKFTNGKEVKDQDGYTYDVCSFYKDNHQVYTASNY 456
AIQ +G + L N LK QD + + A+N
Sbjct: 217 -------AIQYLQGQQNILNNAANLLK---------QDELLLEAFNSA-------VAANI 253
Query: 457 PNSIYTNCA--QVPAGLIGVTTAVWQQLINQ--NALPINFANLNSPTNHL---------N 503
N + + A + G+I + V+ +L + +N A +NS + N
Sbjct: 254 GNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPN 313
Query: 504 AGLNAQNFATSIVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYFNDY--IGL 561
A N Q I + Q S +R+ + + + G K+GY+ +F IGL
Sbjct: 314 ALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKVGYKQFFGKKRNIGL 373
Query: 562 AYYGIIKYNYA----KTNDEKIQQLSYGGGMDVLFD-FITTYANKKQD 604
YYG YN A ++ + +YG G DVL++ F +Y N+ D
Sbjct: 374 RYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVD 421
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 46.2 bits (108), Expect = 3e-06
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 544 GVNVKIGYQHYFNDYI--GLAYYGIIKYN--YAKTN--DEKIQQLSYGGGMDVLFDFITT 597
G+ V+ GY+ +F GL YYG YN Y K++ + L+YG G D+LF+FI
Sbjct: 468 GLGVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDLLFNFI-- 525
Query: 598 YANKKQDNPTKKVFASSFGVFGGL 621
N K N K S G+FGG+
Sbjct: 526 --NDKNTNFLGKNNKISVGLFGGI 547
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 45.4 bits (106), Expect = 5e-06
Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 31/215 (14%)
Query: 510 NFATSIVSAIAQNFSTTSTTTYRSSSKNFRSPIL-----------GVNVKIGYQHYFND- 557
N+ T ++ +A T+Y++ N + I G+ + +GY H+F+
Sbjct: 38 NYQTGSINLMANIHEVREVTSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMGYNHFFHPD 97
Query: 558 -YIGLAYYGIIKYN-----YAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQDNPTKKVF 611
+GL Y+ + + Y K ++YG G+D +++F + QD+
Sbjct: 98 KVLGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDAIWNFFQ--GSFYQDD-----I 150
Query: 612 ASSFGVFGGLRGLYNSYYVFN---QVKGSGNLDIV--TGFNYRYKHSKYSVGISVPLIQS 666
GVFGG+ NS+Y+ N ++ G N V T F + + ++ + +
Sbjct: 151 GVDIGVFGGIAIAGNSWYIGNKGQELLGITNSSAVDNTSFQFLFNFGFKALFVDEHEFEI 210
Query: 667 GIKIAS-NNGIYANSVVLNEGGSHFKVFFNYGWIF 700
G K + NN Y + + F + Y + F
Sbjct: 211 GFKFPTLNNKYYTTDALKVQMRRVFAFYVGYNYHF 245
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 45.1 bits (105), Expect = 6e-06
Identities = 47/178 (26%), Positives = 77/178 (42%), Gaps = 37/178 (20%)
Query: 476 TAVWQQLIN--QNALPI-NFANLNSPTNH----------------LNAGLNAQNFATSIV 516
T++ Q ++N QNAL + N AN+++ T + LN N T++
Sbjct: 279 TSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALN 338
Query: 517 SAIAQNFSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYF--NDYIGLAYYGIIKYNYAKT 574
+ + N + SS N + G KIGY+ +F N +GL YYG YN A
Sbjct: 339 NELKANPWLGNFAAGNSSQVNAFN---GFITKIGYKQFFGENKNVGLRYYGFFSYNGAGV 395
Query: 575 ND----EKIQQLSYGGGMDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLRGLYNSY 628
+ ++ L+YG G DVL++ + + N G FGG++ ++Y
Sbjct: 396 GNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNA---------GFFGGIQLAGDTY 444
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 45.1 bits (105), Expect = 6e-06
Identities = 56/246 (22%), Positives = 95/246 (37%), Gaps = 52/246 (21%)
Query: 479 WQQLINQNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSSSKNF 538
+ L NQN AN N+P +N F + + + S +T Y
Sbjct: 30 YSNLENQNTTRTPSANNNTP-------INTSMFGNNQAAPAQETPSVINTNNY------- 75
Query: 539 RSPILGVNVKIGYQHYF--NDYIGLAYYGIIKYNYAKTN-----------DEKIQQLSYG 585
+ GV+ GY+ +F G YG YN+A + ++ +YG
Sbjct: 76 -GQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVNNFTYG 134
Query: 586 GGMDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGN------ 639
G D L++F Y +K+ N T +F FG+ G + Y+ +Q++ N
Sbjct: 135 VGFDALYNF---YESKEGYN-TAGLFV-GFGLGGDSFIVQGESYLKSQMQICNNTAGCSA 189
Query: 640 --------LDIVTGFNYRY-KHSKYSVGISVPLIQSGIKIASNNGIYANSVVLNEGGSHF 690
+ + GF + KHS VG +PL + + G+ + V + +F
Sbjct: 190 SMNTSYFQMPVEFGFRSNFSKHSGIEVGFKLPLFTN--QFYKERGVDGSVDVFYK--RNF 245
Query: 691 KVFFNY 696
++FNY
Sbjct: 246 SIYFNY 251
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 44.7 bits (104), Expect = 8e-06
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 10/94 (10%)
Query: 534 SSKNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQQLS----YGGG 587
SS+ + G+ +++GY+ +F G YYG YN+A S YG G
Sbjct: 518 SSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFG 577
Query: 588 MDVLFDFITTYANKKQDNPTKKVFASSFGVFGGL 621
D L++FI N K N K S G+FGG+
Sbjct: 578 ADALYNFI----NDKATNFLGKNNKLSVGLFGGI 607
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 44.7 bits (104), Expect = 8e-06
Identities = 30/94 (31%), Positives = 43/94 (44%), Gaps = 10/94 (10%)
Query: 534 SSKNFRSPILGVNVKIGYQHYFNDYI--GLAYYGIIKYNYAKTNDEKIQQLS----YGGG 587
SS+ + G+ +++GY+ +F G YYG YN+A S YG G
Sbjct: 559 SSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFG 618
Query: 588 MDVLFDFITTYANKKQDNPTKKVFASSFGVFGGL 621
D L++FI N K N K S G+FGG+
Sbjct: 619 ADALYNFI----NDKATNFLGKNNKLSVGLFGGI 648
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 44.7 bits (104), Expect = 8e-06
Identities = 27/94 (28%), Positives = 51/94 (53%), Gaps = 14/94 (14%)
Query: 514 SIVSAIAQNFSTTSTTTYRSSS-------KNFRSPIL-GVNVKIGYQHYFNDY--IGLAY 563
+I++A+ F +++++ Y+ S K+++S + G K+GY+ +F IGL Y
Sbjct: 277 NIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNIGLRY 336
Query: 564 YGIIKYNYAKTNDEKIQ----QLSYGGGMDVLFD 593
YG + Y YA D ++ ++YG G D L++
Sbjct: 337 YGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYN 370
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 44.3 bits (103), Expect = 1e-05
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 29/231 (12%)
Query: 471 LIGVTTAVWQQLINQNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTSTTT 530
L+ + + + N L N NL L + + +S+ S IAQ ++ +
Sbjct: 126 LVQALEKMQEPITNPLELVENLKNLE-----LQFSQSQNSMLSSLSSQIAQISNSLNALD 180
Query: 531 YRSSSKNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTND----------EKIQ 580
S SKN S + GV + +GY+H+F + + Y+Y TN K+
Sbjct: 181 PSSYSKNVSS-MYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMN 239
Query: 581 QLSYGGGMDVLFDFITTYANKKQDNPTKKVFA--------SSFGVFGGLRGLYNSYYVFN 632
YG G+D LF+FI A K FA S G++ N+Y
Sbjct: 240 NHLYGLGIDYLFNFIDN-AQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDY 298
Query: 633 QVK-GSGNLDIVTGFNYRY---KHSKYSVGISVPLIQSGIKIASNNGIYAN 679
+ K + I F R +H+ + +G+ +PL + G+ A+
Sbjct: 299 RAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNAS 349
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 43.9 bits (102), Expect = 1e-05
Identities = 53/222 (23%), Positives = 87/222 (38%), Gaps = 29/222 (13%)
Query: 480 QQLINQNALPINFANLNSPTNHLNAGLNAQNFATSIVSAIAQNFSTTSTTTYRSSSKNFR 539
+ + N L N NL L + + +S+ S IAQ ++ + S SKN
Sbjct: 140 EPITNPLELVENLKNLE-----LQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSKNVS 194
Query: 540 SPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTND----------EKIQQLSYGGGMD 589
S + GV + +GY+H+F + + Y+Y TN K+ YG G+D
Sbjct: 195 S-MYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGID 253
Query: 590 VLFDFITTYANKKQDNPTKKVFA--------SSFGVFGGLRGLYNSYYVFNQVK-GSGNL 640
LF+FI A K FA S G++ N+Y + K +
Sbjct: 254 YLFNFIDN-AQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTSFF 312
Query: 641 DIVTGFNYRY---KHSKYSVGISVPLIQSGIKIASNNGIYAN 679
I F R +H+ + +G+ +PL + G+ A+
Sbjct: 313 QIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNAS 354
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 43.9 bits (102), Expect = 1e-05
Identities = 31/97 (31%), Positives = 42/97 (42%), Gaps = 18/97 (18%)
Query: 544 GVNVKIGYQHYF--NDYIGLAYYGIIKYNYAKTNDEKIQQLS----YGGGMDVLFDFITT 597
G+ ++GY+ +F N G YYG + YN+ + S YG G D+L +FI
Sbjct: 519 GIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFIND 578
Query: 598 YANKKQDNPTKKVFASSFGVFGGL----RGLYNSYYV 630
A K SFG FGG+ NS YV
Sbjct: 579 KATKHN--------KISFGAFGGIALAGTSWLNSQYV 607
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 43.1 bits (100), Expect = 2e-05
Identities = 34/145 (23%), Positives = 64/145 (43%), Gaps = 20/145 (13%)
Query: 531 YRSSSKNFR--SPILGVNVKIGYQHYFNDYIGLAYYGIIK-YNYAKTNDEKIQQLSYGGG 587
Y S+ ++R + + G+N K+G+ + N + G YG + +N + T K L+YGGG
Sbjct: 38 YNSNYSDWRHGNDLYGLNFKLGFVGFANKWFGARVYGFLDWFNTSGTEHTKTNLLTYGGG 97
Query: 588 MDVLFDFITTYANKKQDNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFN 647
D++ + I P K + G+ GG++ L + ++F +
Sbjct: 98 GDLIVNLI----------PLDKF---ALGLIGGVQ-LAGNTWMFPYDVNQTRFQFLWNLG 143
Query: 648 YRYK---HSKYSVGISVPLIQSGIK 669
R + S + G+ P++ G K
Sbjct: 144 GRMRVGDRSAFEAGVKFPMVNQGSK 168
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 40.0 bits (92), Expect = 2e-04
Identities = 25/72 (34%), Positives = 34/72 (46%), Gaps = 10/72 (13%)
Query: 531 YRSSSKNFRSPILGVNVKIGYQHYFND--YIGLAYYGIIKYNYAKTNDE----KIQQLSY 584
+ S+S N G VK+GY+ +F GL YYG + YA+ E K SY
Sbjct: 523 HNSNSNNMN----GFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLVKATLSSY 578
Query: 585 GGGMDVLFDFIT 596
G G D L++ T
Sbjct: 579 GAGTDFLYNVFT 590
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 38.9 bits (89), Expect = 4e-04
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
Query: 527 STTTYRSSSKNF---RSPILGVNVKIGYQHYFND--YIGLAYYGIIKYNYAK-------- 573
++ T S++K+ P+ G+ V GY+H+ + GL YYG Y +
Sbjct: 135 TSRTMLSTNKDIPGRNQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAAN 194
Query: 574 ------TNDEKIQQLSYGGGMDVLFDFI 595
+D+K +YG G D+LF+ I
Sbjct: 195 AISPFYLSDQKADMYTYGFGTDMLFNVI 222
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 37.0 bits (84), Expect = 0.002
Identities = 41/191 (21%), Positives = 65/191 (33%), Gaps = 62/191 (32%)
Query: 533 SSSKNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKT--------NDEKIQ---- 580
S + + I G + +GYQ +F + GL YG Y +A + N E Q
Sbjct: 46 SQKQATNATIKGFDALLGYQFFFEKHFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQ 105
Query: 581 ----------------------QLSYGGGMDVLFDFITTYANKKQDNPTKKVFASSFGVF 618
L+YGG MDV+ + I S G F
Sbjct: 106 ILGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVINN-------------GIMSLGAF 152
Query: 619 GGLRGLYNSYYVFNQ------VKGSGNLDIVTGFNYRY---------KHSKYSVGISVPL 663
GG++ NS+ + V+ + T F + + KHS G+ P+
Sbjct: 153 GGIQLAGNSWLMATPSFEGILVEQALVSKKATSFQFLFNVGARLRILKHSSIEAGVKFPM 212
Query: 664 IQSGIKIASNN 674
++ I + N
Sbjct: 213 LKKNPYITAKN 223
>ref|NP_223089.1| putative [Helicobacter pylori J99]
Length = 313
Score = 37.0 bits (84), Expect = 0.002
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 537 NFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQ-----LSYGGGM--D 589
N +P+ ++VK GYQ YF Y G +YG + + ++Q G M D
Sbjct: 126 NINAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGALKENALKQPVGSFFYVLGAMNTD 185
Query: 590 VLFDFITTYANKKQDNPTKKVFASSFGVFG 619
+LFD D TKK F + FG
Sbjct: 186 LLFDM-------PLDFKTKKHFLGVYAGFG 208
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 32.0 bits (71), Expect = 0.054
Identities = 36/139 (25%), Positives = 57/139 (40%), Gaps = 17/139 (12%)
Query: 116 YSQNPVYANMVNGSVTIQNFLPYN---LNNVELSFKDAQGKVVNLGVIETIPKQSQITLP 172
YS AN +N NF Y+ N E F +AQG + + QS +
Sbjct: 1067 YSSFSNQANSLNSGANNANFGVYSRFFANQHEFDF-EAQGALGS--------DQSSLNFK 1117
Query: 173 ASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFQKLSKITTNVTMSYENADTNNFKG 232
++L D S+NY ATA + S + F+ + +V +SY + + NFK
Sbjct: 1118 STLLQDLN----QSYNYLAYSATA-RASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS 1172
Query: 233 NCHDCVSDFTPQTAEELTN 251
N V+ +++ L N
Sbjct: 1173 NSQSQVALKNGASSQHLFN 1191
Score = 27.3 bits (59), Expect = 1.3
Identities = 34/143 (23%), Positives = 56/143 (38%), Gaps = 13/143 (9%)
Query: 492 FANLNSPTNHLNAGLNAQNFATSIVSAIAQN-----FSTTSTTTYRSSSKNFRSPILGVN 546
+++ ++ N LN+G N NF + S N F SS NF+S +L +
Sbjct: 1067 YSSFSNQANSLNSGANNANF--GVYSRFFANQHEFDFEAQGALGSDQSSLNFKSTLL-QD 1123
Query: 547 VKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQDNP 606
+ Y + A YG Y++A + + + S G + L T + + Q
Sbjct: 1124 LNQSYNYLAYSATARASYG---YDFAFFRNALVLKPSVGVSYNHLGS--TNFKSNSQSQV 1178
Query: 607 TKKVFASSFGVFGGLRGLYNSYY 629
K ASS +F + YY
Sbjct: 1179 ALKNGASSQHLFNANANVEARYY 1201
>ref|NP_224078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 231
Score = 29.3 bits (64), Expect = 0.35
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 536 KNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFI 595
K + I +N+K G Q +F YIG+ G+ ++ K+ SY + F +
Sbjct: 78 KEMKDWIATLNLKTGVQSFFKKYIGIR--GVFAWD---LGSGKVNYQSYKDPTNSFFTML 132
Query: 596 TTYANKKQDNPTKKVFASSFGVFGGLRG 623
+ + P + G FGG RG
Sbjct: 133 AVGLDVIMEFPLGS-YKHYLGAFGGARG 159
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 29.3 bits (64), Expect = 0.35
Identities = 28/117 (23%), Positives = 52/117 (43%), Gaps = 19/117 (16%)
Query: 174 SLFNDSEFEQADSFNYQQLQATAT---QFSDANT------QSLFQKLSKITTNVTMSYEN 224
++FN++ F + SFN+ AT + F++AN+ ++F + + N T ++ N
Sbjct: 852 TIFNNANFNNSTSFNFNNSSATTSFVGDFTNANSNLQIAGNAVFGNSTNGSQN-TANFNN 910
Query: 225 ADTNNFKGNC-HDCVSDFTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSS 280
+ N GN D V +P + L+ I + + LNAP F + +
Sbjct: 911 TGSVNIAGNATFDNVVFNSPTNTSVKGKVTLNNITLKN--------LNAPLSFGDGT 959
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 28.5 bits (62), Expect = 0.60
Identities = 35/137 (25%), Positives = 62/137 (44%), Gaps = 10/137 (7%)
Query: 84 SAYGK-YYIPQSTILKNATALFTTDKIENGLTFYSQNPVYANMVNGSVTIQNFLPYNLNN 142
S Y K Y+ + L++ A + NG T S+ + GS+ F LN+
Sbjct: 497 SEYQKTYFNKEGAKLESNVAQTAQNDAANGSTKLSE------VSKGSLENSVF-NMKLND 549
Query: 143 VELSFKDAQGKVVNLGVIETIPKQSQITLPASLFNDSEFEQADSFNYQQL-QATATQFSD 201
V SF +AQ + N G ++P +I L D + + + Y+QL A + +
Sbjct: 550 VNGSFLEAQINLDNNGAFLSLPNGVKIPLYDPTTADIQASKPNEVTYRQLMDAMSIALNY 609
Query: 202 ANTQ-SLFQKLSKITTN 217
+NT +++Q++S T+
Sbjct: 610 SNTDPAIYQQISDNPTS 626
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 27.7 bits (60), Expect = 1.0
Identities = 14/42 (33%), Positives = 19/42 (44%)
Query: 188 NYQQLQATATQFSDANTQSLFQKLSKITTNVTMSYENADTNN 229
N QQ TAT +D+N Q ++ KI + S N N
Sbjct: 837 NKQQNATTATTTTDSNLQKVYNDAQKIANIIASSGNNKGVEN 878
Score = 24.6 bits (52), Expect = 8.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 188 NYQQLQATATQFSDAN--TQSLFQKLSKITTNVTMSYENADTNNFKGNCHDCVSDFTPQT 245
N L AT T + AN Q++ QKL + N + +T N H+ ++ Q+
Sbjct: 318 NLTPLAATPTSTNQANQQVQAIAQKLQSVAINALDNNAINNTTYNLNNLHNALNFQAYQS 377
Query: 246 AEELTNLMLDMIA 258
E N L I+
Sbjct: 378 TIEQYNNALKQIS 390
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 26.9 bits (58), Expect = 1.8
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 353 LNPEKLFGKTLNKVDIV-ELRDIIHEFSHTKGYTHN-GNMTYQRVRLCQENGGAIQE--C 408
L PE L+ + LN+ D+V +L + E G + N N T+ + + E +++
Sbjct: 61 LIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPL 120
Query: 409 EGGKEELV-----------NGKEELKFTNGKEVKDQDGYTYDVCSFYKDNHQVYTASNYP 457
E K++ + +E+ + +E+KD + + K ++ P
Sbjct: 121 EANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNP 180
Query: 458 NSI 460
NS+
Sbjct: 181 NSV 183
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 26.9 bits (58), Expect = 1.8
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 540 SPILGVNVKIGYQHYF-NDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTY 598
SP+L ++ GYQ YF N L +YG E + G D L + T
Sbjct: 142 SPLL-YGLRSGYQKYFANGISALRFYG-----------EYLGGAMKGFKSDSLASYQTAS 189
Query: 599 ANKK--QDNPTKKVFASSFGVFGGLRGLYNSYY 629
N D P K + G+FGG+ +N Y
Sbjct: 190 LNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMY 222
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 26.6 bits (57), Expect = 2.3
Identities = 36/140 (25%), Positives = 55/140 (38%), Gaps = 24/140 (17%)
Query: 105 TTDKIENGLTFYSQNPV---------YANMVNGSVTIQNFLPYNLNNVELSFKDAQG--- 152
T ENG YS+N V Y G VT+Q L ++LN ++ D G
Sbjct: 393 TARNFENGN--YSKNSVQNHAWHPSNYTRKFLGLVTLQEALSHSLNLATINLSDQLGFEK 450
Query: 153 ---KVVNLGVIETIPKQSQITLPASLFNDSEFEQADSF----NYQQLQATATQFSDANTQ 205
+ ++G + +PK I L + F S + A+ + NY + S N Q
Sbjct: 451 IYQSLSDMG-FKNLPKDLSIVLGS--FAISPIDAAEKYSLFSNYGTMLKPMLIESITNQQ 507
Query: 206 SLFQKLSKITTNVTMSYENA 225
+ + + I T S E A
Sbjct: 508 NEVKTFTPIETKKITSKEQA 527
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 26.6 bits (57), Expect = 2.3
Identities = 17/90 (18%), Positives = 38/90 (41%), Gaps = 17/90 (18%)
Query: 510 NFATSIVSAIAQNFSTTSTTTYRSSSKNFRSPILGVNVKIGYQHYFNDYIGLAYYGIIKY 569
N++ + S QN + T+ + +G N G +H+ ++ + + Y
Sbjct: 80 NYSQAAYSTTNQNLTLTANS-------------IGFNTATGLEHFLRNHPKVGFRIFSVY 126
Query: 570 NY----AKTNDEKIQQLSYGGGMDVLFDFI 595
NY + + + + +YGG +D + F+
Sbjct: 127 NYFHSVSLSQPQILMVQNYGGALDFSWIFV 156
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 26.2 bits (56), Expect = 3.0
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 26/125 (20%)
Query: 554 YFNDYIGLAYYGIIKYN-------YAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQDNP 606
Y Y + G YN + + N E+ L YG G ++ F F N P
Sbjct: 319 YNRSYYAQMFEGFCTYNGIDSALCFNELNKEQQDALLYGNGTEISFHF----KNSPLKRP 374
Query: 607 TKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSVGISVPLIQS 666
K + ++ +F + L S Y+ + S N +R K S SV + +
Sbjct: 375 WKGIIQIAYDMFKEQKDL--SDYMSEKTCSSCN-------GHRLKASSLSVQV------A 419
Query: 667 GIKIA 671
G+K+A
Sbjct: 420 GLKMA 424
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 25.8 bits (55), Expect = 3.9
Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 15/69 (21%)
Query: 313 VIDAFRRTINLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFGKTLNKVDIVELR 372
VID R +N+ + ILKS G+ +E A++ EK K +
Sbjct: 460 VIDGGRAQLNIALEILKS------------SGSF-VEVIAISKEKRDSKAYRSKG--GAK 504
Query: 373 DIIHEFSHT 381
DIIH SHT
Sbjct: 505 DIIHTISHT 513
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 25.4 bits (54), Expect = 5.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 357 KLFGKTLNKVDIVELRDIIHEFSHTKGYTHN-GNMTYQRVRLCQENGGAI 405
K +G TLN+ + L II+ FS+T Y + G++ ++ Q N ++
Sbjct: 1982 KEYGITLNQANWKSLLKIINNFSNTANYHFSQGSLVVGAIKEGQTNTNSV 2031
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 25.4 bits (54), Expect = 5.1
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 180 EFEQADSFNYQQLQATATQFSDANTQSLFQKLSKITTNV 218
+ QA +Q++ T SD++ F+KL K+ NV
Sbjct: 80 DLAQAKKITNEQIEKTLEIVSDSDVDVDFEKLKKLMLNV 118
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 25.0 bits (53), Expect = 6.7
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 21 EAFQKHQKDGFFIEAGFETGLLEGTQTKEEVITTQKIY-ENPL 62
EA Q + KD + ++ GF+ G +E + K I+ K Y ++PL
Sbjct: 30 EALQSN-KDRYLLKEGFDIGKIERVKNKAFFISLAKNYPKDPL 71
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 24.6 bits (52), Expect = 8.7
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 42 LEGTQTKEEVITTQKIYENPL----THPQTKEQPKEQNKSDTATPQSAYGK----YYIPQ 93
+EG + K ++ +K +E+ + + P KE PK +NK P K YY+
Sbjct: 130 IEGKKVKRKI---KKAHEHEMALNKSQPLKKEPPKSENKKGLTKPSLKDAKIPKGYYLQI 186
Query: 94 STILKNATALF 104
L + + F
Sbjct: 187 GAFLNSPSKDF 197
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 24.6 bits (52), Expect = 8.7
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 13/88 (14%)
Query: 547 VKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEK--IQQLSYGGGMDVLFDFITTYANKKQD 604
++IG+ F D+I + YG + Y +E + + +L DF+ + K+
Sbjct: 30 LEIGFSDAFKDFIKRSNYGFSQLRYFMVGNESYMFKHVLNFNLESLLIDFMQSL--KEWL 87
Query: 605 NPTKKVFASSFGVFGGLRGLYNSYYVFN 632
P + VFA+ Y YY++N
Sbjct: 88 EPEEIVFANDG---------YGGYYLWN 106
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 795,642
Number of Sequences: 1491
Number of extensions: 40103
Number of successful extensions: 240
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 65
length of query: 700
length of database: 494,079
effective HSP length: 84
effective length of query: 616
effective length of database: 368,835
effective search space: 227202360
effective search space used: 227202360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)