BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645003|ref|NP_207173.1| hypothetical protein
[Helicobacter pylori 26695]
(143 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223723.1| putative [Helicobacter pylori J99] 255 3e-70
ref|NP_223874.1| putative [Helicobacter pylori J99] 28 0.075
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 0.37
ref|NP_224120.1| putative [Helicobacter pylori J99] 26 0.49
ref|NP_222755.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223666.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 24 1.4
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 23 4.1
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_222881.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223088.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicob... 22 9.2
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 22 9.2
ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-B... 22 9.2
ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P... 22 9.2
>ref|NP_223723.1| putative [Helicobacter pylori J99]
Length = 143
Score = 255 bits (652), Expect = 3e-70
Identities = 133/143 (93%), Positives = 139/143 (97%)
Query: 1 MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMP 60
MLEMSLQALNTQDSSVMAQSLL+HAFFAALLALAFMINLYTLFKEKNFIQLN+KIYLVMP
Sbjct: 1 MLEMSLQALNTQDSSVMAQSLLVHAFFAALLALAFMINLYTLFKEKNFIQLNRKIYLVMP 60
Query: 61 AIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERME 120
AIYILLSIALLSG+FIWAMQQF FSFS V MLLGLLLMLIAEIKRHKSVK AITKKERM+
Sbjct: 61 AIYILLSIALLSGVFIWAMQQFEFSFSAVVMLLGLLLMLIAEIKRHKSVKFAITKKERMK 120
Query: 121 AYIKKAKILYFLETILIVVLMGL 143
AYIKKAKILYFLETILI+VLMG+
Sbjct: 121 AYIKKAKILYFLETILIIVLMGI 143
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 28.5 bits (62), Expect = 0.075
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 40/120 (33%)
Query: 33 LAFMINLYTLFKEKNFIQLNKKIYLVMP--AIYILLSIALLSGIFIWAMQQFAFSFSVVA 90
+A +IN++ F + +KI L P A+Y++L+ ALL G+ ++A+ + SV+
Sbjct: 92 IAHVINMFL------FYLIGRKI-LKKPKDALYVVLTYALLPGVNLFAI---LLAKSVLV 141
Query: 91 MLLGLLLMLIAEIKRHKSVKLAITKKERMEAYIKKAKILY-------FLETILIVVLMGL 143
+ LGLL+ + YIK KI Y FL+ I +L+G+
Sbjct: 142 LSLGLLISYL---------------------YIKTQKIPYLTLSACAFLDGAFIPLLLGV 180
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 26.2 bits (56), Expect = 0.37
Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 2/31 (6%)
Query: 38 NLYTLFKEKNFIQLNKKIYLVMPAIYILLSI 68
N+Y KEKNF+ + ++YLV+ +I L I
Sbjct: 221 NIYD--KEKNFLSEHNRVYLVIASIIANLGI 249
>ref|NP_224120.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.8 bits (55), Expect = 0.49
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 5 SLQALNTQDSSVMAQSLLIHAFFAALLA------------LAFMINLYTLFKE--KNFIQ 50
+LQ+ ++ MA +LI F + A L +M+ + ++ F+
Sbjct: 56 ALQSKGVSNAKQMALLVLILDLFKGMFAVFLSKLFGLDYSLQWMVAIASILGHCYSPFLN 115
Query: 51 LN--KKIYLVMPAIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGL 95
N K + +M ++ +L+ I L G+ +W S +A +LG+
Sbjct: 116 FNGGKGVSTIMGSVVLLIPIESLIGLTVWFFVGKVLKISSLASILGV 162
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 25.0 bits (53), Expect = 0.83
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 27 FAALLALAFMINLYTLFKEKNF 48
F + +ALAFM+ Y KE+NF
Sbjct: 38 FNSAVALAFMLFAYRSLKEQNF 59
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 24.6 bits (52), Expect = 1.1
Identities = 24/95 (25%), Positives = 40/95 (41%), Gaps = 18/95 (18%)
Query: 28 AALLALAFMINLYTLF--------------KEKNFIQLNKKIYLVMPAIYILLSIALLSG 73
A LLAL F+ N L K+ + + +Y + +I S +L G
Sbjct: 3 APLLALPFLSNPLVLGALAVIGVGAYLYPNKQDSLVVQADGLYSEILGFFISFSSKILKG 62
Query: 74 IFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKS 108
I + A M+LG+LL+L+ KR+++
Sbjct: 63 IG----EPLANVIQPFGMVLGMLLILLYSFKRYQN 93
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 24.3 bits (51), Expect = 1.4
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 55 IYLVMPAIYILLSIALLSGIFIWAMQQFAFSFSVVAM-----------LLGLLLMLIAEI 103
IY+++ A+Y ++L I +FS + A+ ++GL+L LI +
Sbjct: 866 IYMILAALYE----SILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL-LIGMV 920
Query: 104 KRHKSVKLAITKKERMEAYIKKAKILYFLETILIVVLM 141
++ ++ + + +ER + + IL+ +T L +LM
Sbjct: 921 GKNATLLIDVANEERKKGLNIQEAILFAGKTRLRPILM 958
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 22.7 bits (47), Expect = 4.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 66 LSIALLSGIFIWAMQQFAFSFSVV 89
L L SG+F+ +Q + F+ S+V
Sbjct: 11 LFFLLFSGLFLSKLQAYKFNMSIV 34
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 22.3 bits (46), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 100 IAEIKRHKSVKLAITKKERMEAYIKKAKILYFLET 134
+ E K K K KKE+ E +KK K +Y L +
Sbjct: 553 LEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSS 587
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 22.3 bits (46), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 26 FFAALLALAFMINLYTLFKEK 46
FFA LL + + + +FKEK
Sbjct: 220 FFATLLQTLMLTHYFFIFKEK 240
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 21.9 bits (45), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 102 EIKRHKSVKLAITKKERMEAYIKKAKILYFLE 133
E+K V I +K +E KK + LY L+
Sbjct: 61 ELKEENEVAKKIDEKSLLEEIHKKKRQLYMLK 92
>ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicobacter pylori J99]
Length = 131
Score = 21.6 bits (44), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
Query: 27 FAALLALAFMINLYTLFKEKNFIQ-LNKKIYLVMPAIYILLS 67
F L ++++ +FKEK FI+ N K ++Y+ L+
Sbjct: 23 FTQLYYAKIVVSILEIFKEKGFIKDFNVKDKDKKQSVYVQLA 64
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 21.6 bits (44), Expect = 9.2
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 27 FAALLALAFMINL----YTLFKEKNFIQLNKKIYLVM---PAIYILLSIALLSGIFIWAM 79
F LL A IN LFK F Q+ I +VM + IL+ I S I +
Sbjct: 28 FIGLLVDAIRINANDLGIALFKLMTF-QIFPTITIVMFVVAFVIILVCIQNFSSIMLSGD 86
Query: 80 QQFAFSFSVVA-----MLLGLLLMLIAEIKRHKSVKLAITKKERMEAY 122
+ S V + LLL L+ E K H KL I M A+
Sbjct: 87 EYKLIDPSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAF 134
>ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 21.6 bits (44), Expect = 9.2
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 87 SVVAMLLGLLLMLI-AEIKRHKSVKLAIT--KKERMEAYIKKAKILYFLETILIVVLMG 142
+++ LLGLL L EIK L + +K ++ AYI + + F ++L VLMG
Sbjct: 43 TLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMG 101
>ref|NP_223445.1| putative HEAVY-METAL CATION-TRANSPORTING P-TYPE ATPASE
[Helicobacter pylori J99]
Length = 686
Score = 21.6 bits (44), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 65 LLSIALLSGIFIWAMQQFAFSFSVVAMLLGLL 96
+L+IA + IW FA V ++LGL+
Sbjct: 626 VLAIAKKTKSIIWQNILFALGIKAVFIVLGLM 657
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.334 0.143 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,377
Number of Sequences: 1491
Number of extensions: 4379
Number of successful extensions: 32
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 15
length of query: 143
length of database: 494,079
effective HSP length: 70
effective length of query: 73
effective length of database: 389,709
effective search space: 28448757
effective search space used: 28448757
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 44 (21.6 bits)