BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645007|ref|NP_207177.1| fucosyltransferase
[Helicobacter pylori 26695]
(425 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobact... 751 0.0
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 712 0.0
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 33 0.018
ref|NP_224075.1| putative [Helicobacter pylori J99] 32 0.040
ref|NP_223586.1| putative [Helicobacter pylori J99] 29 0.20
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 26 2.2
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 25 5.0
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 24 6.5
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 24 6.5
ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobac... 24 6.5
ref|NP_222748.1| putative [Helicobacter pylori J99] 24 6.5
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 24 8.4
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 24 8.4
>ref|NP_223719.1| ALPHA-(1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 436
Score = 751 bits (1938), Expect = 0.0
Identities = 375/440 (85%), Positives = 394/440 (89%), Gaps = 19/440 (4%)
Query: 1 MFQPLLDAFIESASIEKMAS-KSPPPPLKIAVANWWGDEEIKEFKKSVLYFILSQRYAIT 59
MFQPLLDAFIES I+K + KSPPPPLKIAVANWWG E EFKKS LYFILSQRY IT
Sbjct: 1 MFQPLLDAFIESTPIKKKITFKSPPPPLKIAVANWWGGAE--EFKKSTLYFILSQRYTIT 58
Query: 60 LHQNPNEFSDLVFSNPLGAARKILSYQNTKRVFYTGENESPNFNLFDYAIGFDELDFNDR 119
LHQNPNE SDLV +P+G+ARKILSYQNTKRVFYTGENE PNFNLFDYAIGFDELDF DR
Sbjct: 59 LHQNPNEPSDLVLGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRDR 118
Query: 120 YLRMPLYYAHLHYKAELVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDLL 179
YLRMPLYYA LHYKAE VNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESD L
Sbjct: 119 YLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDPL 178
Query: 180 KRGFASFVASNANAPMRNAFYDALNSIEPVTGGGSVRNTLGYKVGNKSEFLSQYKFNLCF 239
KRGFASFVASN NAP+RNAFYDALNSIEPVTGGGSV+NTLGY V NKSEFLSQYKFNLCF
Sbjct: 179 KRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLCF 238
Query: 240 ENSQGYGYVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLH 299
EN+QGYGYVTEKI+DAYFSHTIPIYWGSPSVAKDFNPKSFVNV DF NFDEAIDY++YLH
Sbjct: 239 ENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYLH 298
Query: 300 THPNAYLDMLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHKFSTSFMWEYDL 359
THPNAYLDMLYENPLNTLDGKAYFYQ+LSFKKILDFFKTILENDTIYH F++ DL
Sbjct: 299 THPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYH--DNPFIFYRDL 356
Query: 360 HKPLVSI--------------DDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKA 405
++PLV+I DDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKA
Sbjct: 357 NEPLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKA 416
Query: 406 YQKSLPLLRAVRKLVKKLGL 425
YQKSLPLLRA+R+ VKKLGL
Sbjct: 417 YQKSLPLLRAIRRWVKKLGL 436
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 712 bits (1838), Expect = 0.0
Identities = 358/459 (77%), Positives = 384/459 (82%), Gaps = 42/459 (9%)
Query: 1 MFQPLLDAFIESASIEKMASKSPPPPLKIAVANWW--GDEEIKEFKKSVLYFILSQRYAI 58
MFQPLLDA+ +S +++ K PPL IA+ANWW E K F++ +LYFILSQRY I
Sbjct: 1 MFQPLLDAYTDSTRLDETDYK---PPLNIALANWWPLDKRESKGFRRFILYFILSQRYTI 57
Query: 59 TLHQNPNEFSDLVFSNPLGAARKILSYQNTKRVFYTGENESPNFNLFDYAIGFDELDFND 118
TLHQNPNE SDLVF +P+G+ARKILSYQNTKRVFYTGENE PNFNLFDYAIGFDELDF D
Sbjct: 58 TLHQNPNEPSDLVFGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRD 117
Query: 119 RYLRMPLYYAHLHYKAELVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDL 178
RYLRMPLYYA LHYKAE VNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESD
Sbjct: 118 RYLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDP 177
Query: 179 LKRGFASFVASNANAPMRNAFYDALNSIEPVTGGGSVRNTLGYKVGNKSEFLSQYKFNLC 238
LKRGFASFVASN NAP+RNAFYDALNSIEPVTGGGSV+NTLGY V NKSEFLSQYKFNLC
Sbjct: 178 LKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLC 237
Query: 239 FENSQGYGYVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYL 298
FEN+QGYGYVTEKI+DAYFSHTIPIYWGSPSVAKDFNPKSFVNV DF NFDEAIDY++YL
Sbjct: 238 FENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYL 297
Query: 299 HTHPNAYLDMLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHKFSTSFMWEYD 358
HTHPNAYLDMLYENPLNTLDGKAYFYQ+LSFKKILDFFKTILENDTIYH F++ D
Sbjct: 298 HTHPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYH--DNPFIFYRD 355
Query: 359 LHKPLVSI-----------------------------------DDLRVNYDDLRVNYDRL 383
L++PLV+I DDLRVNYDDLRVNYDRL
Sbjct: 356 LNEPLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRL 415
Query: 384 LQNASPLLELSQNTTFKIYRKAYQKSLPLLRAVRKLVKK 422
LQNASPLLELSQNTTFKIYRKAYQKSLPLLR +R+ VKK
Sbjct: 416 LQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK 454
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 32.7 bits (73), Expect = 0.018
Identities = 36/140 (25%), Positives = 66/140 (46%), Gaps = 22/140 (15%)
Query: 57 AITLHQNPNEFSDLVFSNPLGA------ARKILSY-QNTKRVFYTGENESPNFNLFDYAI 109
A+TL Q+ + S + + +G+ A+ I + QN K++ N S FNLF+ +I
Sbjct: 263 ALTLSQSNHTLSTQLQARAMGSQTNREFAKDIYALAQNQKQIL---SNASSIFNLFN-SI 318
Query: 110 GFDELDF-NDRYLRMPL--------YYAHLHYKAEL--VNDTTAPYKLKDNSLYALKKPS 158
D+L + + YL++P Y +++ E+ V D A Y + +S ++ K
Sbjct: 319 PKDQLKYLENAYLKVPHLGKTPTNPYRQNVNLNKEINAVQDNVANYGNRLDSALSVAKDV 378
Query: 159 HHFKENHPNLCAVVNDESDL 178
++ K N + ND +L
Sbjct: 379 YNLKSNQTEIVTTYNDAKNL 398
>ref|NP_224075.1| putative [Helicobacter pylori J99]
Length = 271
Score = 31.6 bits (70), Expect = 0.040
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 363 LVSIDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQ 407
L S+DDL N D + +D L+ NA+ L+ N + ++ Q
Sbjct: 177 LASVDDLIANLDSRKTQFDSLINNANNLVSNVNNVALDVDKRVKQ 221
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 29.3 bits (64), Expect = 0.20
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 6/69 (8%)
Query: 345 IYHKFSTSFMWEYDLHKPLVS-IDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYR 403
++ KF TS+ + Y+ KPL+ + +L NY D +D +L P L + +
Sbjct: 58 VHPKFKTSWDY-YNEPKPLIERLVNLAPNYKD----FDFILTGGEPSLYFNNPILLSVLE 112
Query: 404 KAYQKSLPL 412
Y K +PL
Sbjct: 113 HFYHKKIPL 121
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 25.8 bits (55), Expect = 2.2
Identities = 29/101 (28%), Positives = 44/101 (42%), Gaps = 9/101 (8%)
Query: 303 NAYLDMLYENPLNTLDG--KAYFYQDLSFKKILDFFKTILENDTIYHKFSTSFMWEYDLH 360
NA L+ N LN L G K YF L KI ++ LE + SF+ + LH
Sbjct: 350 NANLNNDLGNLLNRLLGMAKKYFNYSLKSTKITAYYPKELEKAHQILDNANSFVPKMQLH 409
Query: 361 KPLVSIDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKI 401
K L + ++ YD L ++L+ P + N + K+
Sbjct: 410 KALEELFNI---YDFL----NKLIAKEEPWVLHKNNESEKL 443
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 24.6 bits (52), Expect = 5.0
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 354 MWEYDLHKPLVSIDDLRVNYDD 375
+W+ D H P+ S L V+YD+
Sbjct: 642 IWDRDYHTPITSSFTLDVSYDN 663
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 24.3 bits (51), Expect = 6.5
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 209 VTGGGSVRNTLGYKVGNKSEFLSQYKFNLCFENSQGYGYVTEKILDAYFSHTIPIYWGSP 268
VTG ++ + + N + L Q + L N YGY + IL S + +Y
Sbjct: 2661 VTGTSTIMSYNNQALINFNTQLKQGAYTLINANRMVYGYDNQTILGGSLSDYLKLY---- 2716
Query: 269 SVAKDFNPK 277
DFN K
Sbjct: 2717 -TLIDFNGK 2724
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 24.3 bits (51), Expect = 6.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 372 NYDDLRVNYDRLLQNASPLLELSQNTTFKI-------YRKAYQKSLPLLRAVRKLVKK 422
++ L++ ++ + +L L N KI + K+ +KS PLL + +V+K
Sbjct: 163 HFSSLKIPFEEKTLSEEEILALLHNPKRKIRKKSQKAFSKSLEKSRPLLTYILNMVRK 220
>ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobacter pylori J99]
Length = 385
Score = 24.3 bits (51), Expect = 6.5
Identities = 15/47 (31%), Positives = 22/47 (45%)
Query: 378 VNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRAVRKLVKKLG 424
VN +++S LE + FK+ K +SL LLR + L G
Sbjct: 313 VNTHNTSKHSSAELEKCVKSVFKLTPKGIIESLDLLRPIYSLTSAYG 359
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 24.3 bits (51), Expect = 6.5
Identities = 22/91 (24%), Positives = 42/91 (45%), Gaps = 7/91 (7%)
Query: 266 GSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLHTHPNAYLDMLYENPLNTLDGKAYFYQ 325
G P V K NPKS + DF + ++ + KY T + + + LD K +F
Sbjct: 171 GKPFVNKFLNPKSETTMKDFMSSEKFVK--KYRFTQKDNI--KRTQELKSLLDQKRHF-- 224
Query: 326 DLSFKKILDFFKTILENDTIYHKFSTSFMWE 356
L + ++ ++K L + + K + F+++
Sbjct: 225 -LGYLQVTGYWKDKLNDPLLPSKEVSFFVFQ 254
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.9 bits (50), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 161 FKENHPNLCAVVNDESDLLK 180
FKENH +L +N+E +L+
Sbjct: 479 FKENHKSLAKTLNNEERVLE 498
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 23.9 bits (50), Expect = 8.4
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 279 FVNVHDFNNFDEAIDYIKYLHTHPNAYLDMLYENPLNTLDGKAY--FYQ--------DLS 328
++N FN ++A + +L+ LD + +NP + L AY FY+ D
Sbjct: 579 YLNNPLFNALNDAFNSNAFLNV---INLDAITQNPKD-LGLLAYYLFYKILEESRKNDSG 634
Query: 329 FKKILDFFKTILENDTIYHKFS 350
F LD FK+ +END + K +
Sbjct: 635 FLVFLDEFKSYVENDLLNTKIN 656
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,126
Number of Sequences: 1491
Number of extensions: 26822
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 16
length of query: 425
length of database: 494,079
effective HSP length: 80
effective length of query: 345
effective length of database: 374,799
effective search space: 129305655
effective search space used: 129305655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)