BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645012|ref|NP_207182.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223714.1| putative [Helicobacter pylori J99] 426 e-121
ref|NP_222894.1| putative [Helicobacter pylori J99] 77 3e-16
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 39 2e-04
ref|NP_223770.1| putative [Helicobacter pylori J99] 37 5e-04
ref|NP_223025.1| putative [Helicobacter pylori J99] 30 0.047
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 29 0.14
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 29 0.14
ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXON... 28 0.23
ref|NP_223725.1| putative outer membrane protein [Helicobac... 28 0.30
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 27 0.52
ref|NP_223642.1| putative [Helicobacter pylori J99] 27 0.52
ref|NP_223534.1| putative [Helicobacter pylori J99] 27 0.52
ref|NP_222782.1| putative [Helicobacter pylori J99] 27 0.52
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 0.67
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 27 0.67
ref|NP_223135.1| putative [Helicobacter pylori J99] 27 0.67
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 0.88
ref|NP_223121.1| putative [Helicobacter pylori J99] 26 0.88
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 26 1.1
ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99] 25 1.5
ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter py... 25 1.5
ref|NP_223248.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_224139.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 3.3
ref|NP_223176.1| putative [Helicobacter pylori J99] 24 3.3
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 24 3.3
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 24 3.3
ref|NP_224076.1| putative amino acid abc transporter, ATP-b... 23 5.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 5.7
ref|NP_223674.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 23 7.5
ref|NP_223331.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_224063.1| putative thiophene/furan oxidation protein... 23 9.7
ref|NP_223621.1| putative cation efflux system protein [Hel... 23 9.7
ref|NP_223396.1| HIT FAMILY PROTEIN [Helicobacter pylori J99] 23 9.7
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 426 bits (1094), Expect = e-121
Identities = 211/250 (84%), Positives = 231/250 (92%), Gaps = 2/250 (0%)
Query: 1 MQKNILKMTLLLVFLFLRNAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEML 60
MQK+I K+TLLLVFLFLRNAVGL+DKKA P+SVQNTPK+LPPIQLRL+Q +E+LI+ML
Sbjct: 1 MQKSIFKITLLLVFLFLRNAVGLDDKKAA--PKSVQNTPKNLPPIQLRLDQAYEDLIKML 58
Query: 61 ENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYV 120
+NMGK TQYEFPKIKEILEQSEEEWL VAHEECVALVMLISPKASIENSPIYKNCYEAYV
Sbjct: 59 DNMGKSTQYEFPKIKEILEQSEEEWLGVAHEECVALVMLISPKASIENSPIYKNCYEAYV 118
Query: 121 KQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASI 180
KQRIHDLYDFYIE KKVKRKIKKAH+ E A+N+SQPL KE PK+ENKK L KP+LKDA I
Sbjct: 119 KQRIHDLYDFYIEGKKVKRKIKKAHEHEMALNKSQPLKKEPPKSENKKGLTKPSLKDAKI 178
Query: 181 PKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKS 240
PKGYYLQIGA LN+PSKDFLQTLKTFP+Q+++KDSLTHY IGPYKTKEEALKQLENA KS
Sbjct: 179 PKGYYLQIGAFLNSPSKDFLQTLKTFPHQMEEKDSLTHYLIGPYKTKEEALKQLENAAKS 238
Query: 241 FKNKPVLVEK 250
FKNKP LVEK
Sbjct: 239 FKNKPALVEK 248
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 77.4 bits (189), Expect = 3e-16
Identities = 43/114 (37%), Positives = 64/114 (55%), Gaps = 5/114 (4%)
Query: 136 KVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAP 195
KV K K+AHK + +P K+ + E K K N K ++ KG+YLQ+G + P
Sbjct: 158 KVAPKDKEAHKDKAKHAAKEPKVKKEARKEVSK---KANSK-TNLTKGHYLQVGVFAHTP 213
Query: 196 SKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFKNKPVLVE 249
+K FLQ FP++I+ + + Y IGPYK+K+EAL + K KPV++E
Sbjct: 214 NKAFLQEFNQFPHKIEDRGATKRYLIGPYKSKQEALMHADEVSKKM-TKPVVIE 266
Score = 23.9 bits (50), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 146 KQETAINQSQPLTKESPKNENKKNLVKPNLK 176
K E ++ + L +SPK E+K + V N+K
Sbjct: 68 KDEKKDDEFESLNMDSPKQEDKLDKVVDNIK 98
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 38.5 bits (88), Expect = 2e-04
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 158 TKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIK---KKD 214
+KE+ K E K+ +K +K+ I Y + A +++Q +FP IK K
Sbjct: 97 SKEAAKLEASKSYMKAFVKECGIKSASYFETNDLKEA--LNYIQNA-SFPLVIKALNKNT 153
Query: 215 SLTHYFIGPYKTKEEALKQLENAIKSFKNKPVLVE 249
S+ H+ +EEALK LE+A+K N+PV++E
Sbjct: 154 SIVHH-------QEEALKILEDALKQ-SNEPVIIE 180
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 37.0 bits (84), Expect = 5e-04
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 135 KKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNL---KDASIPKGYYLQIGAX 191
K+ + K +K K T N++ PL E+PKN+ KK K + KD S K + + +
Sbjct: 157 KEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQEKAKVEFDKDLSKQKEIFQEALSF 216
Query: 192 LN----APSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFKNKPVL 247
A +K+ L L+ Y++ Y +G E K+ AIK +K +L
Sbjct: 217 FRNKSYAEAKERLLWLEANSYRL----YYVRYVLGEVAYGE---KRYREAIKYYKESALL 269
Query: 248 VEK 250
+K
Sbjct: 270 NQK 272
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 30.4 bits (67), Expect = 0.047
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 133 ESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXL 192
E K+++ ++K+ KQE A N P +E PK++ + V+P KD + K L+ L
Sbjct: 185 EVKEMQEEVKEKQKQEVAEN---PQDEEKPKDDETQGSVEPP-KDEEVSK--ELETQEEL 238
Query: 193 NAPSKDF--LQTLKTFPYQIK-KKDSLTHYFIGPYKTKEEALKQLENAIKSFKN 243
P ++ + +K +IK +K T P + EA+++L I+ N
Sbjct: 239 ETPKEETQEQEPIKEETQEIKEEKQEKTQ--DSPSAQELEAMQELVKEIQENSN 290
Score = 27.7 bits (60), Expect = 0.30
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 4/69 (5%)
Query: 19 NAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHE--ELIE--MLENMGKGTQYEFPKI 74
N+ E+KK T + + TP+D+ +L + + E E+ E ++ + K E P+
Sbjct: 288 NSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAETPQE 347
Query: 75 KEILEQSEE 83
KEI E +E
Sbjct: 348 KEIQETQDE 356
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 28.9 bits (63), Expect = 0.14
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 136 KVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPK 182
K K K + K E + + + KE PK E KK K K+ S+PK
Sbjct: 110 KPKPKPEPKPKPEPKVEEPK---KEEPKEEPKKEEAKEEAKEKSVPK 153
Score = 23.1 bits (48), Expect = 7.5
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 159 KESPKNENKKNLVKPNLKDASIPK 182
KE PK E K KP K PK
Sbjct: 83 KEEPKKEEPKKETKPKPKPKPKPK 106
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 28.9 bits (63), Expect = 0.14
Identities = 30/128 (23%), Positives = 53/128 (40%), Gaps = 29/128 (22%)
Query: 24 EDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIEMLENMGKGTQYEFPKIKEILEQSEE 83
E+KKA PES+ + + + ++L+ EE+ ++ Y F K K +LE+
Sbjct: 55 ENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKD-- 112
Query: 84 EWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIESKKVKRKIKK 143
A +E++P+ N +A + Q + D E+ K + K+
Sbjct: 113 --------------------APLEDTPLEANKQDALL-QALKD------EANHKKEREKR 145
Query: 144 AHKQETAI 151
KQE I
Sbjct: 146 EVKQEEEI 153
>ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
[Helicobacter pylori J99]
Length = 516
Score = 28.1 bits (61), Expect = 0.23
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 43 PPIQLRLNQVHEELIEMLENMGKGTQYEFPK---IKEILEQSEEEWLKVAHE 91
PP+ L L + EL+E++E MG+ E P+ + LE EE+ +K +H+
Sbjct: 415 PPLTLNLKDIDRELLEIIE-MGEPYGQENPEPLFQAKNLEVIEEKIIKESHQ 465
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 27.7 bits (60), Expect = 0.30
Identities = 27/107 (25%), Positives = 43/107 (39%), Gaps = 33/107 (30%)
Query: 93 CVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIESKKVKRKIKKAHKQETAIN 152
C++L+ L +P EA+ K H F++E+ ++ A +E AI
Sbjct: 10 CLSLISLFNP-------------LEAFQK---HQKDVFFVEAGFETGLLEGAQTKEQAIA 53
Query: 153 QS-------------QPLTKESPKNENKKNLVKPNLKDASIPKGYYL 186
Q+ P TKE PK +NK + P S+ YY+
Sbjct: 54 QNTQNTQKIYENPLTHPQTKEQPKEQNKSDTATPQ----SVYGRYYI 96
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 26.9 bits (58), Expect = 0.52
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 44 PIQLRLNQVHEELIEMLENMGKGTQYEFPKIKEI 77
PI LRL IE L+N+ T Y + ++E+
Sbjct: 756 PISLRLEDTERNTIEKLKNLYIKTAYNYMPLREL 789
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.9 bits (58), Expect = 0.52
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 164 NENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGP 223
N+ K+++K +KD + K I A N K+F+Q L + ++ + + T+ P
Sbjct: 26 NDKSKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDP 85
Query: 224 YKTKEEALKQLENAIKS 240
+E +L +A S
Sbjct: 86 SLDNDENSSELLDAFTS 102
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 26.9 bits (58), Expect = 0.52
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 19 NAVGLEDKKATTQPESVQNTPKDLPPIQLRLNQVHEELIE--MLENMGKGTQYEFP---K 73
NA+G++ KK Q +S+ + K+ I +L EE+ M + K EF K
Sbjct: 467 NALGVKSKKIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQESVKDAYSEFVFALK 526
Query: 74 IKEILEQSEEEWLKVAHEECVALVMLISPKASIENS 109
+IL+ E K+ + EC A ++ SIENS
Sbjct: 527 RLKILKAQMLELQKI-NNECYAKLI------SIENS 555
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 26.9 bits (58), Expect = 0.52
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 60 LENMGKGTQYEFPKIKEILEQSE 82
LEN+ + TQYE KI E LE+++
Sbjct: 51 LENLEQETQYEMRKINEQLEEAK 73
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.6 bits (57), Expect = 0.67
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 135 KKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPN 174
+++K++IK+ KQE Q + +E+ + + K+N K N
Sbjct: 96 QEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQN 135
Score = 26.2 bits (56), Expect = 0.88
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 135 KKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIP 181
+++K++IK+ KQE Q KE N+ K+N V P D P
Sbjct: 104 QEIKQEIKQEIKQEIKQETKQEQEKE---NKPKQNSVSPVQNDQKTP 147
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 26.6 bits (57), Expect = 0.67
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 5/53 (9%)
Query: 135 KKVKRKIKKAHKQETAINQSQ----PLTKESPKNE-NKKNLVKPNLKDASIPK 182
K +K++ KKA ++ T S+ PL + S K E KK + K + IPK
Sbjct: 145 KPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIPK 197
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 26.6 bits (57), Expect = 0.67
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 99 LISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLT 158
LIS + ++E + + K+RI + +Y K K ++N SQ
Sbjct: 441 LISVEGNVEGYETFSDSLFLLSKERIEEALHYYQPKKVYNLSYGAKIKHAVSLNHSQVKL 500
Query: 159 KESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTH 218
K+ NK++ + +K P+ + +KD K I+ K+
Sbjct: 501 KQI----NKQDAI-VRIKSMFSPRSNH----------AKDLKNLQKNL---IRFKEDFFT 542
Query: 219 YFIGPYKTKEEALKQLEN 236
+ P KTK+EA + +++
Sbjct: 543 HLNTPCKTKQEAFEWVDS 560
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.2 bits (56), Expect = 0.88
Identities = 16/51 (31%), Positives = 25/51 (48%)
Query: 140 KIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGA 190
K+ K K+ +NQ K +++ K++ KP K+ S K L IGA
Sbjct: 19 KLNKISKKFFTLNQILKREKPLKRHKKTKSIEKPFNKNKSFLKASVLLIGA 69
>ref|NP_223121.1| putative [Helicobacter pylori J99]
Length = 288
Score = 26.2 bits (56), Expect = 0.88
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 125 HDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPK 182
H+L++ I++ K+K + + +E A+ + + + L +P K A PK
Sbjct: 220 HELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMHQMTHHGVIKLWEPEFKKAFFPK 277
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 25.8 bits (55), Expect = 1.1
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Query: 142 KKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQ 201
KKAH + A + L + S +N++ N +K ++ L+ + +FL+
Sbjct: 291 KKAHLEHLAAS----LKRLSFENKHHLNALKLE------------KLTIALDNKTLEFLR 334
Query: 202 TLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIK 239
KT +I + S + + +TK E L +LENA+K
Sbjct: 335 LKKTLLEKISTQLSTSPFL----QTKTERLNRLENALK 368
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
Length = 459
Score = 25.4 bits (54), Expect = 1.5
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 7/54 (12%)
Query: 32 PESVQNTPKDLP----PIQLRLNQVHEELIEMLENMG---KGTQYEFPKIKEIL 78
P ++NT K+LP + ++ EE E++ N+ K FP IKEI+
Sbjct: 355 PSDLENTIKNLPYSYTTPEEKIAVSEEEKFEIIRNLQEALKNPPSHFPTIKEII 408
>ref|NP_223282.1| inorganic pyrophosphatase [Helicobacter pylori J99]
Length = 173
Score = 25.4 bits (54), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (50%)
Query: 196 SKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFK 242
SK L +K F K + + ++ KE A+K LE AIK+++
Sbjct: 126 SKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQ 172
>ref|NP_223248.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.4 bits (54), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 221 IGPYKTKEEALKQLENAIKSFK 242
I P +KEE +K+ EN IK+ K
Sbjct: 263 ISPKTSKEELIKEAENKIKNSK 284
>ref|NP_224139.1| putative [Helicobacter pylori J99]
Length = 208
Score = 25.0 bits (53), Expect = 2.0
Identities = 15/66 (22%), Positives = 32/66 (47%)
Query: 151 INQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQI 210
+N+ L E+ + ++ +K +L ++P+ Y + +NA S L TL++ +
Sbjct: 121 VNEMSVLALENLRVLLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNLLTLRSSNKAL 180
Query: 211 KKKDSL 216
K+ L
Sbjct: 181 KEMQDL 186
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 24.3 bits (51), Expect = 3.3
Identities = 18/57 (31%), Positives = 24/57 (41%), Gaps = 1/57 (1%)
Query: 112 YKNCYEAYVKQRIHDLYDFYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKK 168
Y N V+ I L + E+ K +R KK Q + P KE+PK E K
Sbjct: 188 YANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAP-AKETPKTETPK 243
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.3 bits (51), Expect = 3.3
Identities = 13/42 (30%), Positives = 23/42 (53%)
Query: 209 QIKKKDSLTHYFIGPYKTKEEALKQLENAIKSFKNKPVLVEK 250
+I+KK+ + K+EA+K+ + A + +N P L EK
Sbjct: 246 RIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEK 287
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 24.3 bits (51), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (49%)
Query: 156 PLTKESPKNENKKNLVKPNLKDASIPKG 183
P KE+PKNE K P ++ KG
Sbjct: 168 PKAKEAPKNEKKTKENNPPFNRINLMKG 195
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 3.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 210 IKKKDSLTHYFIGPYKTKEEALKQLENAIKSFK--NKPVLVEK 250
I+ K+ T+ FI P K +E + ENA K + NKP+ EK
Sbjct: 156 IEDKNYYTNAFIKPQKENQENMS--ENAPKDAQKNNKPLKEEK 196
>ref|NP_224076.1| putative amino acid abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 261
Score = 23.5 bits (49), Expect = 5.7
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 9/71 (12%)
Query: 72 PKIKEILEQSEEEW-LKVAHEE--------CVALVMLISPKASIENSPIYKNCYEAYVKQ 122
P E+L E+ W LK A ++ C L S +EN + Y AY K+
Sbjct: 61 PTKGEVLLFGEDIWKLKEAEQQKIFNRCGICFQFGALYSSLTVLENVGVMLEQYGAYSKK 120
Query: 123 RIHDLYDFYIE 133
+ ++ +IE
Sbjct: 121 IVEEISKMWIE 131
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.5 bits (49), Expect = 5.7
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 55 ELIEMLENMGKGTQYEFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKN 114
ELI + + + F K+K+ E + K AH+ ++ P +Y N
Sbjct: 929 ELIGLHVLNRESLNHSFEKLKD--PTIGESYYKEAHDRNP---IIKKPSHKKLEQRLYIN 983
Query: 115 CYEAYVKQRIHDLYDFYIESKKVKRKIKKAHKQE 148
+ AY + +++D+ I V K K+HK E
Sbjct: 984 -HSAYFRGVSEEIHDYMIGGYGVLDKYLKSHKNE 1016
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.5 bits (49), Expect = 5.7
Identities = 25/133 (18%), Positives = 52/133 (38%), Gaps = 15/133 (11%)
Query: 72 PKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFY 131
PK K+ E+ +E + ++ + +V +P+ +N +A +I
Sbjct: 104 PKPKKTKEKKKEAPAPIIKKKEIEIVNTFE-----NQTPLVENTPKAVSHSQI------- 151
Query: 132 IESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAX 191
+K K+K+++ K A+N+ + N N + V K+ S K +I
Sbjct: 152 ---EKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRH 208
Query: 192 LNAPSKDFLQTLK 204
N + + +K
Sbjct: 209 ENIKRRTGFRVIK 221
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 23.1 bits (48), Expect = 7.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 211 KKKDSLTHYFIGPYKTKEEALKQLENAIKSFKN 243
K+ + L + I Y+ E ENAIK+FKN
Sbjct: 164 KRSEKLLDFLIARYRIVELVG---ENAIKAFKN 193
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 23.1 bits (48), Expect = 7.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 40 KDLPPIQLRLNQVHEELIEMLENMGK 65
K L +Q L Q LIE LEN GK
Sbjct: 19 KSLESLQDALKQSVHLLIETLENQGK 44
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 23.1 bits (48), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 211 KKKDSLTHYFIGPYKTKEEALKQLENAIKS 240
K K+ Y I P +E +K L+ A+K+
Sbjct: 161 KAKNKKRGYIILPIALRESEIKNLDEAVKN 190
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 22.7 bits (47), Expect = 9.7
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 154 SQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKK 213
SQ +++ PK + + L+ +L + + ++ +K L TL+ F Y I
Sbjct: 379 SQKISEFFPKLDTQNKLLLTSLAQTTALENAITEL-----QNAKSHLDTLELFSYHILSA 433
Query: 214 DSLTHYFIGPYKTKE 228
+ PY+T +
Sbjct: 434 IENLNLLTRPYETSQ 448
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 22.7 bits (47), Expect = 9.7
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 225 KTKEEALKQLENAIKSFK 242
KTK+E L+++ +++K FK
Sbjct: 624 KTKDELLEKIMDSLKDFK 641
>ref|NP_223396.1| HIT FAMILY PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 22.7 bits (47), Expect = 9.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 83 EEWLKVAHEECVALVMLISPKASIENSPIYKN 114
E +LK ++ CV + +P EN +Y+N
Sbjct: 10 ESYLKEKNKSCVFCGISQNPTKDSENRVLYRN 41
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,197
Number of Sequences: 1491
Number of extensions: 14327
Number of successful extensions: 77
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 42
length of query: 250
length of database: 494,079
effective HSP length: 75
effective length of query: 175
effective length of database: 382,254
effective search space: 66894450
effective search space used: 66894450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)