BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645013|ref|NP_207183.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223713.1| putative [Helicobacter pylori J99] 140 6e-36
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 29 0.016
ref|NP_222962.1| putative [Helicobacter pylori J99] 27 0.077
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 26 0.13
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 26 0.13
ref|NP_222774.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 26 0.17
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 0.22
ref|NP_222894.1| putative [Helicobacter pylori J99] 25 0.22
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 25 0.22
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 0.29
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_222926.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_224075.1| putative [Helicobacter pylori J99] 24 0.50
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 0.50
ref|NP_223119.1| putative co-chaperone with DnaK [Helicobac... 24 0.65
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 0.85
ref|NP_223650.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223494.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_222928.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223101.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223641.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 23 1.5
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 1.9
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223651.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [... 22 1.9
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 22 2.5
ref|NP_223664.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223491.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_222937.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 22 2.5
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.2
ref|NP_223331.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223889.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 21 4.2
ref|NP_223099.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 21 4.2
ref|NP_224114.1| putative component of cation transport for... 21 5.5
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 21 5.5
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 21 5.5
ref|NP_222877.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222780.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylo... 20 7.2
ref|NP_223830.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223172.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_222831.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 20 9.4
ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Heli... 20 9.4
ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 20 9.4
ref|NP_222975.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222808.1| putative [Helicobacter pylori J99] 20 9.4
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 20 9.4
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 140 bits (352), Expect = 6e-36
Identities = 73/75 (97%), Positives = 75/75 (99%)
Query: 2 MQSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKD 61
MQSLSLLNQLGAKIDELIEKI+KQEEEL+ALRQANTTLNAQNEEKDIQIAILYDELSAKD
Sbjct: 1 MQSLSLLNQLGAKIDELIEKIQKQEEELSALRQANTTLNAQNEEKDIQIAILYDELSAKD 60
Query: 62 KGIQGLYDKISDLLS 76
KGIQGLYDKISDLLS
Sbjct: 61 KGIQGLYDKISDLLS 75
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 29.3 bits (64), Expect = 0.016
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 10 QLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYD 69
Q+ K EL +KI E++ AL+ + N Q EK+I A++Y D+ I+ + D
Sbjct: 1192 QITEKNQELADKITDCAEQILALKAKDPKANTQKLEKEID-ALVYQLYHLTDEEIKTIED 1250
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 26.9 bits (58), Expect = 0.077
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
Query: 7 LLNQLGAKIDELIEKIKKQEEELNALR-QANTTLNAQNEEKDIQIAILYDELSAKDKGIQ 65
LLN+ +IDE ++ + +EE L+ + L EE + IL + AKD I
Sbjct: 68 LLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENE---GILREIKQAKDSKIG 124
Query: 66 GLYDKISD 73
Y K+ D
Sbjct: 125 ETYSKMKD 132
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 26.2 bits (56), Expect = 0.13
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 2/39 (5%)
Query: 29 LNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGL 67
L A+++ TL A N D++I +YD +KGI L
Sbjct: 297 LKAIKEKIATLQASNP--DVKITSVYDRSELIEKGIDNL 333
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 26.2 bits (56), Expect = 0.13
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Query: 16 DELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDEL-------SAKDKGIQGLY 68
++L+E + +Q+E L L+ + +K I+ L S K+KG+Q L
Sbjct: 213 EKLVEAVAEQDEALMEKYLGGEELDIEEIKKGIKTGCLNMSFVPMLCGSSFKNKGVQTLL 272
Query: 69 DKISDLL 75
D + D L
Sbjct: 273 DAVIDYL 279
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.2 bits (56), Expect = 0.13
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 10 QLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELS---AKDKGIQG 66
+L K+ +L K E N LRQA N Q + +IAI EL A+ K ++G
Sbjct: 213 RLTDKLKQLESAQKSLENTNNQLRQALENSNVQLAQAKEKIAIEKSELEREIARLKSLEG 272
Query: 67 LYDKISDL 74
+ K SDL
Sbjct: 273 MEAK-SDL 279
Score = 21.6 bits (44), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 16 DELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIA 51
D+L +K K + L + NT L A+NE ++I+
Sbjct: 51 DQLRQKNDKLFITKDKLTKENTELFAENESLSVKIS 86
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 25.8 bits (55), Expect = 0.17
Identities = 21/62 (33%), Positives = 27/62 (42%), Gaps = 2/62 (3%)
Query: 11 LGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDK 70
L AKID +E K E E A + LN E IQI +Y+E K L+
Sbjct: 330 LSAKIDWWLEN--KLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPNLFKT 387
Query: 71 IS 72
+S
Sbjct: 388 LS 389
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.4 bits (54), Expect = 0.22
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 8/43 (18%)
Query: 14 KIDELIEKIKKQEEELNALRQANTTL--------NAQNEEKDI 48
K + +++I+K E LN L Q+NT N N +K+I
Sbjct: 153 KAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAKKEI 195
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 25.4 bits (54), Expect = 0.22
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 14 KIDELIEKIKKQEEELN-------ALRQANTTLNAQNEEKDIQ 49
K+D++++ IKKQE E + A + TT Q +K+++
Sbjct: 89 KLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELK 131
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 25.4 bits (54), Expect = 0.22
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 9 NQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQ 65
N+ +++ L+E +K + L+ AQN+ ++ +++LY+E + +Q
Sbjct: 56 NKEKVRLNRLLETYQKMKNSLD--ESVELFELAQNDSDEVTLSLLYEEAPTLEHSVQ 110
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.0 bits (53), Expect = 0.29
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 14 KIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISD 73
K EL+E + +E+ N + + L + +EK+ + L +E++ KG +D SD
Sbjct: 1815 KAQELLESLSSYDEKGNLIAPSKKELENELKEKEAKSVNLDEEIA---KGCS--FDVYSD 1869
Query: 74 LL 75
+L
Sbjct: 1870 VL 1871
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 24.6 bits (52), Expect = 0.38
Identities = 20/86 (23%), Positives = 37/86 (42%), Gaps = 14/86 (16%)
Query: 3 QSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNE--------------EKDI 48
Q S L K + L E+ K+Q+ + + + + L Q+E E+
Sbjct: 53 QYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQK 112
Query: 49 QIAILYDELSAKDKGIQGLYDKISDL 74
+ +L EL K K +Q L+ K +++
Sbjct: 113 GLELLQKELDEKSKQVQELHQKEAEI 138
Score = 21.9 bits (45), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 21 KIKKQEEELNALRQANTTLNAQNE 44
K K+QEE+L LR N NAQ +
Sbjct: 182 KFKQQEEQLEMLR--NELKNAQRK 203
Score = 21.9 bits (45), Expect = 2.5
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 3 QSLSLLNQLGAKIDELIEKIKKQEEELNALRQAN----TTLNAQNEEK 46
+ L LL + + + ++++ ++E E+ L++ N + L A+NE+K
Sbjct: 112 KGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKK 159
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 24.6 bits (52), Expect = 0.38
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 6 SLLNQLGAKIDELIEKIKK 24
S +N+L AKID L+E+ KK
Sbjct: 10 SRINRLSAKIDALLEQQKK 28
>ref|NP_224075.1| putative [Helicobacter pylori J99]
Length = 271
Score = 24.3 bits (51), Expect = 0.50
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 7 LLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSA 59
L+++L +++++++ K A+R N L+ +N EK I D+L A
Sbjct: 139 LMDRLSGDANQVVQEVMK------AIRNVNRILDDENVEKFKHILASVDDLIA 185
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 24.3 bits (51), Expect = 0.50
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 3 QSLSLLNQLGAKI-DELIEKIKKQEEELNALRQANTTLNAQNEEKD 47
Q+L+L+N+ + +EL +KIK+ +E+ LRQ + K+
Sbjct: 94 QALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKE 139
>ref|NP_223119.1| putative co-chaperone with DnaK [Helicobacter pylori J99]
Length = 288
Score = 23.9 bits (50), Expect = 0.65
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 4 SLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKG 63
S SL L + ++IKK L + + EEK +I Y+ LS ++K
Sbjct: 2 SKSLYQTLNVSENASQDEIKKSYRRLARQYHPDLNKTKEAEEKFKEINAAYEILSDEEKR 61
Query: 64 IQGLYDKISD 73
Q YD+ D
Sbjct: 62 RQ--YDQFGD 69
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 23.5 bits (49), Expect = 0.85
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 8 LNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNE 44
+N LG++I E+ ++IK+ E +L+ AN + ++E
Sbjct: 173 VNSLGSQIAEINKRIKEVENN-KSLKHANELRDKRDE 208
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 0.85
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 10 QLGAKIDELIEKIKKQEEELNALRQANTTLNAQN 43
+LG + +K++KQ LNAL++ N N
Sbjct: 218 ELGVMAQLIHKKLEKQSHSLNALQEQQGYSNNDN 251
>ref|NP_223494.1| putative [Helicobacter pylori J99]
Length = 205
Score = 23.5 bits (49), Expect = 0.85
Identities = 11/15 (73%), Positives = 12/15 (79%)
Query: 20 EKIKKQEEELNALRQ 34
E KK+EE LNALRQ
Sbjct: 40 EANKKREETLNALRQ 54
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 23.5 bits (49), Expect = 0.85
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 20 EKIKKQEEELNALRQANTTLNAQNEEK 46
E++K+ +EE+ ++ N Q+EEK
Sbjct: 184 EEVKEMQEEVKEKQKQEVAENPQDEEK 210
>ref|NP_222928.1| putative [Helicobacter pylori J99]
Length = 326
Score = 23.5 bits (49), Expect = 0.85
Identities = 13/47 (27%), Positives = 24/47 (50%)
Query: 18 LIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGI 64
L++ +K+ EE+ A + T +QN E + + ++ A DK I
Sbjct: 212 LVDILKEVREEMEAEKLKATANKSQNGELAFREMTMVQKIKAVDKVI 258
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 23.1 bits (48), Expect = 1.1
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 13/65 (20%)
Query: 10 QLGAKIDELIEKI--KKQEEELNALRQANTTLNAQN-----------EEKDIQIAILYDE 56
++ A+I E++ I K+ E L + N LN + KDIQI +L
Sbjct: 37 EVSARIYEILNAIAQSKESEFLILVSDLNLNLNEAEYLQDKIQEHRLQNKDIQIQLLDHH 96
Query: 57 LSAKD 61
+S K+
Sbjct: 97 ISGKE 101
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 39 LNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISD 73
LNA + K+ + IL +L+ + L DKI +
Sbjct: 46 LNAIAQSKESEFLILVSDLNLNLNEAEYLQDKIQE 80
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 22.7 bits (47), Expect = 1.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 18/64 (28%)
Query: 15 IDELIEKIKKQEEELNALRQA--------NTTL----------NAQNEEKDIQIAILYDE 56
++E IEK +K ++ NAL Q N TL N NE++ ++ IL
Sbjct: 78 VNENIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPFFNYNTANEDEKNRLVILASR 137
Query: 57 LSAK 60
+S++
Sbjct: 138 ISSQ 141
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 22.7 bits (47), Expect = 1.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 11 LGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKG 63
+G +DE + + K + E + + L KDIQ I Y E + D G
Sbjct: 162 VGISLDEASDLMHKHKIEKLPIVDKDNVLKGLITIKDIQKRIEYPEANKDDFG 214
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 22.3 bits (46), Expect = 1.9
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 5/63 (7%)
Query: 8 LNQLGAKIDELIEKIKKQEEELNALRQANTTL-----NAQNEEKDIQIAILYDELSAKDK 62
LN+ A +DE IE+ +E + L+ + L NA + E + + L AK+K
Sbjct: 660 LNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQILKTALEWLEAKNK 719
Query: 63 GIQ 65
++
Sbjct: 720 ALK 722
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.3 bits (46), Expect = 1.9
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 10/36 (27%)
Query: 11 LGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEK 46
LG K +E +EKI+ ++E ++N +NE+K
Sbjct: 112 LGKKTNENLEKIESKKE----------SINKENEKK 137
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 22.3 bits (46), Expect = 1.9
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 14 KIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQI 50
+IDEL K ++QEE+ +T L + K+++I
Sbjct: 5 QIDELENKFEEQEEQAQ-----DTPLKQEPSTKEVKI 36
>ref|NP_223249.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori
J99]
Length = 123
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 26 EEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGI 64
E E N L+ A N+E++++++ +EL K +
Sbjct: 3 ETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNL 41
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 21.9 bits (45), Expect = 2.5
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 17 ELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISD 73
EL++ +KK + +A+ A+ LN Q+++ + LYD + LY +I D
Sbjct: 388 ELLKLLKKNQMNESAIEIAHLLLN-QDDDLKAKEQALYD--------LGALYARIKD 435
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 18 LIEKIKKQEEELNALRQANTTLNAQNEEKDI 48
+ E+IK ++ L+ +AN TLN+ N+ D+
Sbjct: 57 ITERIKLAQDTLD---RANQTLNSINKVNDV 84
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 21.9 bits (45), Expect = 2.5
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 6 SLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQ 65
++LN L ++++IE+ + L +L N L EE+ IQ+ I+ K +
Sbjct: 162 AVLNALN--LNQIIEQ-DLDADILESLETPNNALEETKEEEIIQVGIIGRVNVGKSSLLN 218
Query: 66 GLYDKISDLLS 76
L K L+S
Sbjct: 219 ALTKKERSLVS 229
>ref|NP_222937.1| putative [Helicobacter pylori J99]
Length = 265
Score = 21.9 bits (45), Expect = 2.5
Identities = 13/46 (28%), Positives = 24/46 (51%)
Query: 17 ELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDK 62
+L+ + ++ + LNA +Q + LNA E AI +A++K
Sbjct: 102 KLVAETNQKIQALNATQQNSAKLNAIFNEIPADYAIELPSTNAENK 147
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 21.9 bits (45), Expect = 2.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 8 LNQLGAKIDELIEKIKKQEEEL 29
L+Q G K+DE + +I + EE+
Sbjct: 334 LHQKGVKMDERLSEIAAKVEEI 355
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 3.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 8 LNQLGAKIDELIEKIKKQEEELNALRQANTTLNA 41
L+ L A++ + +EK++K++ +LN L N NA
Sbjct: 808 LSPLIARLKKQLEKLEKEKLKLN-LHNENFVKNA 840
Score = 20.4 bits (41), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 6 SLLNQLGAKIDELIEKIKKQEEELNALRQ 34
S+L + + L+EK K ++EL+ L Q
Sbjct: 843 SVLEKARESLKTLLEKEGKIQQELDLLEQ 871
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 21.6 bits (44), Expect = 3.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 25 QEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISDL 74
Q+ + +++ T NA + + + + + +AKDKGI+ D+ L
Sbjct: 804 QKTLMQSVQNCIDTYNADLKRFNERFREAFKQRTAKDKGIKKSADRYKHL 853
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 21.2 bits (43), Expect = 4.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 10 QLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEK 46
++ +I + I++ KQE+E + N+ QN++K
Sbjct: 109 EIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQK 145
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 21.2 bits (43), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (61%), Gaps = 1/24 (4%)
Query: 20 EKIKKQEEELNALRQANTTLNAQN 43
+K+KK E+L A +Q N T A N
Sbjct: 167 DKMKKLAEDLQAAQQ-NATTKANN 189
>ref|NP_223099.1| putative [Helicobacter pylori J99]
Length = 370
Score = 21.2 bits (43), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 12 GAKIDELIEKIKKQEEELNALRQANTT 38
G +DE IEK+K LN L+ + T
Sbjct: 183 GDLVDENIEKVKSFLLPLNNLKSTHGT 209
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 21.2 bits (43), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 9 NQLGAKIDELIEKIKKQEEELNALRQ 34
NQL I L EK+K E L AL +
Sbjct: 125 NQLLHAITALDEKMKSSENHLMALEK 150
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 17 ELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAI 52
E+I+KI+ N TL AQ E++ + +
Sbjct: 134 EIIQKIESLGYGAKIYNAQNYTLKAQKEQRSYLLTL 169
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 19 IEKIKKQEEELNALRQANTTLNAQ 42
IE +KK+ E +NTT +A+
Sbjct: 101 IESVKKEGELFKITTTSNTTYHAK 124
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 13 AKIDELIEKIKKQEEELNALRQANT 37
A DEL +++K EEE QAN+
Sbjct: 33 AVYDELYQELKAYEEENPNRIQANS 57
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 3 QSLSLLNQLGAKIDELIEKIKKQEEELNALRQANTTLNA 41
Q L+ +GA +++ + +KK +E L ++ L+A
Sbjct: 94 QIFDQLDLIGASAEKIAKMVKKIQEPLQKHQEIFDNLHA 132
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 15 IDELIEKIKKQEEELNALRQANTTLNAQNE 44
++ EKIK+ + NA+ +A L + E
Sbjct: 317 LEGFTEKIKESPNDSNAINEAFDNLETELE 346
>ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 380
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 2 MQSLSLLNQLGAKI 15
M+S +L+Q+GAK+
Sbjct: 184 MESAKVLSQMGAKV 197
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 9 NQLGAKIDELIEKIKKQEEEL 29
+Q G+K ELI ++K+ E L
Sbjct: 258 SQRGSKAQELIAYLQKELESL 278
>ref|NP_223172.1| putative [Helicobacter pylori J99]
Length = 343
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 28 ELNALRQANTTLNAQNE 44
++NAL++ T LNA +E
Sbjct: 255 DINALKRNKTFLNAPSE 271
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 9 NQLGAKIDELIEKIKKQEEEL 29
+Q G+K ELI ++K+ E L
Sbjct: 291 SQRGSKAQELIAYLQKELESL 311
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 56 ELSAKDKGIQGLYDKISDLLS 76
E+ DK +Q L+D+I +++
Sbjct: 426 EVRDSDKQVQDLFDEIKSVVA 446
>ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 217
Score = 20.0 bits (40), Expect = 9.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 37 TTLNAQNEEKDIQIAILYDELSAKDKGI 64
TT NA +K IA++ AKDK +
Sbjct: 181 TTDNASKLQKFSGIAVISAITQAKDKAL 208
>ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/16 (43%), Positives = 12/16 (74%)
Query: 57 LSAKDKGIQGLYDKIS 72
LSA D+ +G+Y+ +S
Sbjct: 9 LSASDRASKGVYEDLS 24
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 43 NEEKDIQIAILYDE 56
++EK +++AI YDE
Sbjct: 111 HKEKAVEVAIDYDE 124
>ref|NP_222808.1| putative [Helicobacter pylori J99]
Length = 176
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 46 KDIQIAILYDELSAKDK 62
+DIQ+ L DE+ +DK
Sbjct: 110 QDIQLYALVDEMLKEDK 126
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 20.0 bits (40), Expect = 9.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 9 NQLGAKIDELIEKIKKQEEELNA 31
N++GA D+ EK+ K +EL +
Sbjct: 813 NKIGALADKPNEKVIKAIDELKS 835
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.130 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,338
Number of Sequences: 1491
Number of extensions: 2858
Number of successful extensions: 60
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)