BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645014|ref|NP_207184.1| hypothetical protein
[Helicobacter pylori 26695]
(78 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223712.1| putative [Helicobacter pylori J99] 159 1e-41
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 28 0.026
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 27 0.077
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 26 0.13
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 26 0.17
ref|NP_223055.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_223783.1| putative [Helicobacter pylori J99] 24 0.65
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223715.1| putative [Helicobacter pylori J99] 23 0.85
ref|NP_223674.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_222890.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223466.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact... 22 1.9
ref|NP_223330.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 22 1.9
ref|NP_223623.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223173.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_224180.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 22 3.2
ref|NP_224041.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223426.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223070.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 3.2
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 22 3.2
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 22 3.2
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 21 4.2
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 21 4.2
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 21 4.2
ref|NP_222979.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_222895.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223957.1| 50S RIBOSOMAL PROTEIN L3 [Helicobacter pyl... 21 5.5
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 21 5.5
ref|NP_223465.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 21 5.5
ref|NP_222998.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_224022.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223665.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 20 7.2
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 7.2
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 20 9.4
ref|NP_223391.1| putative aminotransferase [Helicobacter py... 20 9.4
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 20 9.4
ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [He... 20 9.4
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 20 9.4
ref|NP_222886.1| putative [Helicobacter pylori J99] 20 9.4
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 159 bits (401), Expect = 1e-41
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY 60
MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY
Sbjct: 1 MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEY 60
Query: 61 LHNELQKLLEKISSCSIT 78
LHNELQKLLEKISSCSIT
Sbjct: 61 LHNELQKLLEKISSCSIT 78
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 28.5 bits (62), Expect = 0.026
Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 5/55 (9%)
Query: 20 SLNNTFSDEMKRTL--KERFHNQELNAL---ELLKDYLHESCQNEYLHNELQKLL 69
+L+N +M++ + E F N LN E +++ L E +NEYL N+++ LL
Sbjct: 223 TLSNRAGYQMRQNVISSEIFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLL 277
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 26.9 bits (58), Expect = 0.077
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 19 ISLNNTFSDEMKRTLKE-RFHNQELNALELLKDYLHESCQNEYLHNELQKLLEKI 72
++ N F + +K+TL+ + HN ELLK L EYLH+++ + E I
Sbjct: 85 VAKNEGFKELVKKTLETIKTHNIHTTE-ELLKSPLDNKPFEEYLHSQIAVIGENI 138
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 26.2 bits (56), Expect = 0.13
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 14/73 (19%)
Query: 9 EITY---LGKRYKISLNNTFSDEMK-----------RTLKERFHNQELNALELLKDYLHE 54
++TY L + IS+N D +K +KERF NQ++NAL + +
Sbjct: 182 DLTYQPVLSTKVNISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPID 241
Query: 55 SCQNEYLHNELQK 67
+ N L+ +QK
Sbjct: 242 AITNRKLNVSIQK 254
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 25.8 bits (55), Expect = 0.17
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 10 ITYLGKRYKISLNNTFS-DEMKRTLKERFHNQELNALELLKDYLHESCQNEYLHNELQKL 68
I LG ++L+ +K K FH++++ E+L+DY H + + L N +K
Sbjct: 58 IVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFK-EILEDYKHLEKEFKELSNTAEKE 116
Query: 69 LEKIS 73
+K++
Sbjct: 117 GDKVT 121
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 24.6 bits (52), Expect = 0.38
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 26 SDEMKRTLKERFHNQELNALELLKDYLHESCQNEYLHNELQK 67
S + K LKE H+Q ++ LLKD L + LH LQ+
Sbjct: 349 SSKEKAPLKEA-HSQIMHQYHLLKDTLKNYSLKDLLHLYLQE 389
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.9 bits (50), Expect = 0.65
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 33 LKERFHNQELNALELLKDYLHESCQNEYLHNELQKLLEK 71
L E ++LN LEL + Y + EL K+++K
Sbjct: 119 LIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKK 157
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.5 bits (49), Expect = 0.85
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 26 SDEMKRTLKERFHNQELNALELLKDYLHESCQNEYLHNELQKLLEK 71
S EM R K + E++A++ L +E N HNE K +EK
Sbjct: 374 SKEMSRNFKLDSNKNEIDAIKDLIKKANEQITN---HNETIKDIEK 416
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.5 bits (49), Expect = 0.85
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 LENDSLEITYLGK---RYKISLNNTFSDEMKRTLKERFHN 39
LEN + + Y + + LNN S E + L+ERF N
Sbjct: 37 LENTQIRMQYTADAIAKSLLELNNASSLEPLKILEERFKN 76
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 23.1 bits (48), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 32 TLKERFHNQELN-ALELLKDYLHESCQNE 59
TL++ F N+ N ALE LK+ +H E
Sbjct: 23 TLEKNFFNKHNNSALEFLKESIHSKKNTE 51
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 23.1 bits (48), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (49%)
Query: 12 YLGKRYKISLNNTFSDEMKRTLKERFHN 39
YL RY +++ N FS+ + E N
Sbjct: 39 YLASRYSVAVGNLFSEHLYDLRNETMTN 66
>ref|NP_223466.1| putative [Helicobacter pylori J99]
Length = 336
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 46 ELLKDY-LHESCQNEYLHNELQKLLEKISSCS 76
ELLK+ L E C +L ++ LLEK++ S
Sbjct: 176 ELLKNLNLKEGCAPLFLEAFIKNLLEKLNEAS 207
>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 262
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 12 YLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKD 50
Y +I +T D+ + LKE HN L + K+
Sbjct: 165 YSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKE 203
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 22.3 bits (46), Expect = 1.9
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 8/36 (22%)
Query: 40 QELNALELLKDYLHESCQNEYLHNELQK--LLEKIS 73
QE++A EL+K+ LH + N+ K L EKIS
Sbjct: 2 QEISAYELIKEKLHA------IPNQRHKGSLFEKIS 31
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 27 DEMKRTLKERFHNQELNALELLKD 50
DE K L E N+ NA+ LKD
Sbjct: 545 DEHKTNLNENDANEIQNAINALKD 568
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 21.9 bits (45), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (54%), Gaps = 1/36 (2%)
Query: 13 LGKRYKISLNNTFSDEMKRTLKERFHNQELNALELL 48
LG + IS T D TL+E F E+N++EL+
Sbjct: 15 LGVAFLISGAGTL-DAKTFTLQEFFKEVEINSMELI 49
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.9 bits (45), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 41 ELNALELLKDYLHESCQNEYLHNELQKLLEKI 72
E NAL L+ ++ HN++ K+LEKI
Sbjct: 217 ETNALVFLEMLKIFGLLSQVHHNDVLKILEKI 248
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 21.6 bits (44), Expect = 3.2
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 28 EMKRTLKE------RFHNQELNALELLKDYLHESCQNEYLHNELQKLLEKIS 73
E+K+ L+E R +++E N +++ ++ ++ + EL+ LLEK++
Sbjct: 75 EIKKQLQENTKQEHRLNDEEFNQIKIFLLPENDETKHHPNYCELEPLLEKMA 126
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 21.6 bits (44), Expect = 3.2
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 30 KRTLKER--FHNQELNALELLKDYLHESCQNEYLHNELQKLLEKIS 73
++ L+ER F +L L+L +D + + L + +KL +KI+
Sbjct: 184 QKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKIA 229
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 21.6 bits (44), Expect = 3.2
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 5 NDSLEITYLGKRYKISLNNTFS 26
N+ +++ +L YK++LN+ S
Sbjct: 122 NNKIQVEHLNPHYKMNLNSKAS 143
>ref|NP_223426.1| putative [Helicobacter pylori J99]
Length = 245
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 59 EYLHNELQKLLEKI 72
EY+HN L++L KI
Sbjct: 232 EYIHNTLRRLEHKI 245
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 28 EMKRTLKERFHNQELNALELLKDYLHESCQNEYLHN 63
E L+E+ ++ A++L+ + + +NE L N
Sbjct: 58 EQNNYLREKLTDKVGRAMDLIDEIQRDKTENESLEN 93
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 21.6 bits (44), Expect = 3.2
Identities = 7/22 (31%), Positives = 15/22 (67%)
Query: 19 ISLNNTFSDEMKRTLKERFHNQ 40
+ + N+ ++K +KERF+N+
Sbjct: 430 LDVKNSTIKDLKDAIKERFNNE 451
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 17 YKISLNNTFSDEMKRTLKERFHN 39
Y SLN T + + T KE HN
Sbjct: 282 YSYSLNETQYSQFQTTTKEFGHN 304
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 14 GKRYKISLNNTFSDEMKRTLKERFHNQEL 42
G ++ S +E +R ++E FH++EL
Sbjct: 107 GIKFFNSYGYKLKEEEERAIEEIFHDEEL 135
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 21.2 bits (43), Expect = 4.2
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 41 ELNALE-LLKDYLHESCQNEY 60
++N+L+ ++ YL+ESC Y
Sbjct: 95 DINSLDHSIESYLNESCSKRY 115
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 21.2 bits (43), Expect = 4.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 42 LNALELLKDYLHESCQNEY 60
L+ +LLKDY E+C +
Sbjct: 9 LDTDKLLKDYQEEACTKNF 27
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 33 LKERFHNQELNALELLKDYLH 53
+K+RF + N L L+ DY H
Sbjct: 302 IKKRFDILQKNNLILIDDYAH 322
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.2 bits (43), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 44 ALELLKDYLHESCQNEYLHNELQKLLEKISSCS 76
A EL K YL + N+YL + +L KIS S
Sbjct: 133 ASELEKTYLFFTLINKYLPSAQSQLPLKISKDS 165
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 21.2 bits (43), Expect = 4.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 29 MKRTLKERFHNQELNALELLKDYLHESCQNEYLHNELQKLLE 70
MK T+KE F + + +DY + L +L++ +E
Sbjct: 1 MKTTIKEIFQEEGYSIPNYQRDYAWKDKNFRDLWEDLEEAIE 42
>ref|NP_223957.1| 50S RIBOSOMAL PROTEIN L3 [Helicobacter pylori J99]
Length = 191
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (56%)
Query: 15 KRYKISLNNTFSDEMKRTLKERFHNQELNALELLK 49
K+Y++S +K + ++ + +L+ALE LK
Sbjct: 58 KKYQLSKEFNHFATLKASQQKELGDLDLSALETLK 92
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 348
Score = 20.8 bits (42), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 21 LNNTFSDEMKRTLKERFHNQ----ELNALELLK 49
+NNT S E++ +KER + E + LE LK
Sbjct: 42 INNTQSKEIQGVVKERSYRASQGLESDLLENLK 74
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 20.8 bits (42), Expect = 5.5
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 39 NQELNALELLKDYLHESCQ 57
++E +LL++Y H+ CQ
Sbjct: 86 SKEQKIKQLLEEYTHKLCQ 104
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 20.8 bits (42), Expect = 5.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 61 LHNELQKLLEKISSCSIT 78
+H+ + K LE S+ SIT
Sbjct: 111 IHDGVSKFLENFSAASIT 128
>ref|NP_222998.1| putative [Helicobacter pylori J99]
Length = 290
Score = 20.8 bits (42), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 40 QELNALELLKDYLHESCQNEYLHNELQKLLEKIS 73
+EL AL+ K + ++ N++L N + EKIS
Sbjct: 122 EELIALKGKKYHKKKNHLNQFLTNHANFVYEKIS 155
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 20.4 bits (41), Expect = 7.2
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 12 YLGKRYKISLNNTFSDEMKRTLKERFHNQELNALELLKDYLHESCQNEYLHNELQKLLE 70
YL +R L F D + + +++ E + Y + QN +LQ LE
Sbjct: 171 YLYRRLCFLLGKHFMDRFLKNNAKASVKDFMSSKEFVNKYRYTPKQNTERAKKLQSYLE 229
>ref|NP_223665.1| putative [Helicobacter pylori J99]
Length = 92
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 57 QNEYLHNELQKLLEKISSC 75
+ EY N +++ L+K S C
Sbjct: 45 REEYYKNHIEEALKKDSEC 63
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 59 EYLHNELQKLLEKISS 74
EYLH Q LL K+++
Sbjct: 227 EYLHKNKQSLLLKLNA 242
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 20.4 bits (41), Expect = 7.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 9 EITYLGKRYKISLNNTFSDEMKRTLKERFHNQE 41
EIT LG + ++ F +KE+ ++E
Sbjct: 256 EITRLGDNKSVKIDVRFISATNANMKEKIASKE 288
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/19 (36%), Positives = 12/19 (62%)
Query: 45 LELLKDYLHESCQNEYLHN 63
LE +KDY +++C + N
Sbjct: 260 LECVKDYAYKTCALLFYEN 278
>ref|NP_223391.1| putative aminotransferase [Helicobacter pylori J99]
Length = 369
Score = 20.0 bits (40), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 28 EMKRTLKERFHNQELNALELLKDYL 52
E+K LKE++ Q E KD L
Sbjct: 297 ELKNLLKEKYQVQFAGGQEPYKDTL 321
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/22 (31%), Positives = 13/22 (58%)
Query: 19 ISLNNTFSDEMKRTLKERFHNQ 40
++ NN D + + KE+F N+
Sbjct: 407 LAQNNAKLDNLSKKEKEKFQNE 428
>ref|NP_223111.1| RNA POLYMERASE SIGMA FACTOR (sigma 28) [Helicobacter pylori J99]
Length = 255
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 9 EITYLGKRYKISLNNTF 25
E+ L +RY+ +LN++F
Sbjct: 76 ELIKLARRYESALNDSF 92
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 20.0 bits (40), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 5 NDSLEITYLGKRYKISLNNTF 25
N EI Y K++KI +TF
Sbjct: 161 NQGFEIFYRWKKFKIVWFSTF 181
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 20.0 bits (40), Expect = 9.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 21 LNNTFSDEMK 30
LNNTF+D+ K
Sbjct: 196 LNNTFNDDKK 205
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,132
Number of Sequences: 1491
Number of extensions: 4013
Number of successful extensions: 45
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 78
length of database: 494,079
effective HSP length: 54
effective length of query: 24
effective length of database: 413,565
effective search space: 9925560
effective search space used: 9925560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)