BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645018|ref|NP_207188.1| adhesin-thiol peroxidase
(tagD) [Helicobacter pylori 26695]
(166 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99] 322 3e-90
ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli... 35 8e-04
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 27 0.37
ref|NP_223021.1| putative [Helicobacter pylori J99] 26 0.63
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 26 0.63
ref|NP_223584.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_222867.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223864.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori... 23 4.1
ref|NP_223243.1| putative [Helicobacter pylori J99] 22 7.0
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 22 9.2
>ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99]
Length = 166
Score = 322 bits (825), Expect = 3e-90
Identities = 165/166 (99%), Positives = 165/166 (99%)
Query: 1 MQKVTFKEETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVRFQVVSALPSLTGSVC 60
MQKVTFKEETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVRFQVVSALPSLTGSVC
Sbjct: 1 MQKVTFKEETYQLEGKALKVGDKAPDVKLVNGDLQEVNLLKQGVRFQVVSALPSLTGSVC 60
Query: 61 LLQAKHFNEQTGKLPSVSFSVISMDLPFSQGQICGAEGIKDLRILSDFRYKAFGENYGVL 120
LLQAKHFNEQ GKLPSVSFSVISMDLPFSQGQICGAEGIKDLRILSDFRYKAFGENYGVL
Sbjct: 61 LLQAKHFNEQAGKLPSVSFSVISMDLPFSQGQICGAEGIKDLRILSDFRYKAFGENYGVL 120
Query: 121 LGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEPNYEALLKVLK 166
LGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEPNYEALLKVLK
Sbjct: 121 LGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEPNYEALLKVLK 166
>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
Length = 152
Score = 35.4 bits (80), Expect = 8e-04
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Query: 18 LKVGDKAPDVKLVNGDLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQTGKLPSV 77
L+VG APD +L N D E++L + V+ P C L+AK F+ +
Sbjct: 4 LEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKK 63
Query: 78 SFSVISMDLPFSQG-----QICGAEGI----KDLRILSDFRYKAFGENYGVLLGKGSLQG 128
+ V+ + SQ C I +D ++ + YKA+G+ +L GK L
Sbjct: 64 NAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKVAN--LYKAYGKR--MLYGKEHLG- 118
Query: 129 LLARSVFVLDDKGVV 143
+ RS F+++ +GV+
Sbjct: 119 -IIRSTFIINTQGVL 132
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 26.6 bits (57), Expect = 0.37
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 4 VTFKEETYQLEG-KALKVGDKAPDVKLVNGDLQEVN 38
+T E T LEG + LK GDK PD LV+ ++ +++
Sbjct: 713 ITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMD 748
>ref|NP_223021.1| putative [Helicobacter pylori J99]
Length = 251
Score = 25.8 bits (55), Expect = 0.63
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 95 GAEGIKDLRILSDFRYKAFGENYG-VLLGKGSLQGLLARSVFVLDDKG 141
GA GIK +R + DF A G + G G +L + + DKG
Sbjct: 195 GAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKG 242
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 25.8 bits (55), Expect = 0.63
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 7 KEETYQLEGKALKVGDKAPDVKLVNGDLQE 36
KEET + E + + +GD +K++ D+Q+
Sbjct: 196 KEETKEKEEETIIIGDNTNAMKIIKKDIQK 225
>ref|NP_223584.1| putative [Helicobacter pylori J99]
Length = 219
Score = 23.9 bits (50), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 121 LGKGSLQGLLARSVFVLDDKGVVIYKEIVQNILEEPNYE 159
L K + ++ F LD VIY IV+NI P Y+
Sbjct: 69 LQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQ 107
>ref|NP_222867.1| putative [Helicobacter pylori J99]
Length = 318
Score = 23.5 bits (49), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 130 LARSVFVLDDKGVVIYKEIVQNILEEPNYEALLK 163
+A+S FVLD KG+++ K E+ + E LL+
Sbjct: 53 MAKSFFVLDAKGMLMLKP--SQFKEQGHKEGLLE 84
>ref|NP_223864.1| putative [Helicobacter pylori J99]
Length = 130
Score = 23.1 bits (48), Expect = 4.1
Identities = 10/28 (35%), Positives = 15/28 (52%)
Query: 111 KAFGENYGVLLGKGSLQGLLARSVFVLD 138
K FG+++G+ G L G S + LD
Sbjct: 61 KVFGDDFGIFFVTGVLGGFTTFSSYGLD 88
>ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori J99]
Length = 193
Score = 23.1 bits (48), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 132 RSVFVLDDKGVVIYKEIVQNILEEPNYEALLKVL 165
R VF+L+D + + V N +E+ ++ AL K L
Sbjct: 93 RDVFILEDLKDFLGRYYVLNSIEDVDFNALEKRL 126
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 22.3 bits (46), Expect = 7.0
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 134 VFVLDDKGVVIYKEIVQNILEEPNYEALLKVL 165
+FV + G ++Y ++ L+ P ++ ++K L
Sbjct: 25 LFVFNRIGFILYTGYYKHALKNPVFDEIIKTL 56
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 21.9 bits (45), Expect = 9.2
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 59 VCLLQAKHFNEQTGKLPSVSFSVISMDLPFSQGQICGAEGIKDLRILSDFRY 110
+CLL+ KH NE+ + S+ S ++ L +G +I S +RY
Sbjct: 531 LCLLEFKHKNEEKAQQLSLEASQ-TLSLCLEKGVTLSNFKAPIEKIASSYRY 581
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.139 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,532
Number of Sequences: 1491
Number of extensions: 7312
Number of successful extensions: 23
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 11
length of query: 166
length of database: 494,079
effective HSP length: 71
effective length of query: 95
effective length of database: 388,218
effective search space: 36880710
effective search space used: 36880710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)