BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645026|ref|NP_207196.1| hypothetical protein
[Helicobacter pylori 26695]
(182 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223700.1| putative [Helicobacter pylori J99] 281 6e-78
ref|NP_224131.1| putative [Helicobacter pylori J99] 30 0.051
ref|NP_223645.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 0.56
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 25 0.95
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 0.95
ref|NP_222977.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 2.8
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 24 2.8
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 23 6.2
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 23 6.2
ref|NP_223368.1| putative [Helicobacter pylori J99] 22 8.1
>ref|NP_223700.1| putative [Helicobacter pylori J99]
Length = 170
Score = 281 bits (720), Expect = 6e-78
Identities = 147/184 (79%), Positives = 155/184 (83%), Gaps = 16/184 (8%)
Query: 1 MRFKGVVAFISLAVALGVLAYLFLSVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDI 60
MRFKGVVAFISLAVALGVL YLFLSVKKEMP TSHAISQT+ KSH+I
Sbjct: 1 MRFKGVVAFISLAVALGVLTYLFLSVKKEMPTTSHAISQTNE-------------KSHEI 47
Query: 61 DLEE--NSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHYSEIPFEEKKREYS 118
+LEE N+P T ++EKA HNEEDH+N L QNLDAQE INYPVVEH+ EIPFEEKKREYS
Sbjct: 48 NLEESPNNPN-TPNDEKAPHNEEDHSNTLFQNLDAQEVINYPVVEHHFEIPFEEKKREYS 106
Query: 119 KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLDYYKIRY 178
KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKN LIIYLDENKKERLLADLDYYKIRY
Sbjct: 107 KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNHSGLIIYLDENKKERLLADLDYYKIRY 166
Query: 179 HAVF 182
HAVF
Sbjct: 167 HAVF 170
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 29.6 bits (65), Expect = 0.051
Identities = 23/111 (20%), Positives = 50/111 (44%), Gaps = 11/111 (9%)
Query: 6 VVAFISLAVALGVLAYLFLSVKKEMPATSH--AISQTHAISQTNEGLSQTDAKSHDIDL- 62
+ FI ++ L VL+ KK + + +Q + I+Q N+ + + + + D +
Sbjct: 5 ITHFIVISFVLSVLSACKDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVT 64
Query: 63 --------EENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYPVVEHY 105
EN E ++ E A +++ NN L + + Q++++ P+ Y
Sbjct: 65 KEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLSSPLNRKY 115
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 27.3 bits (59), Expect = 0.25
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 79 NEEDHNNALSQNLDAQE---SINYPVV--EHYSEIPFEEKKREYSKLIIKDLKDYQWWCL 133
N +D + ++L A E +IN P + ++ E E Y K + DYQ L
Sbjct: 1144 NVKDLELIIPKDLKATEIMANINSPWIPTQYLEEFLMELSANHYEKQYGDKMTDYQLSNL 1203
Query: 134 KEILKKEQIDYAYD 147
KE +K E + AY+
Sbjct: 1204 KEDIKIEHLSGAYE 1217
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.2 bits (56), Expect = 0.56
Identities = 14/52 (26%), Positives = 24/52 (45%)
Query: 46 TNEGLSQTDAKSHDIDLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESI 97
T + D + D ++PTET E +H +ED ++ + + QE I
Sbjct: 171 TESSDNHLDNPTESSDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQEII 222
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 25.4 bits (54), Expect = 0.95
Identities = 14/63 (22%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 101 VVEHYSEIPFEEKKREYSKLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLD 160
++E YSEIP +K ++ ++ L +Y+ + +L +Q+ + + + + D
Sbjct: 43 LIEKYSEIPLNDKLKDTPFMVQVKLPNYKDY----LLDNKQVVLTFKLVHHSKKITLIGD 98
Query: 161 ENK 163
NK
Sbjct: 99 ANK 101
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.4 bits (54), Expect = 0.95
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 25 SVKKEMPATSHAISQTHAISQTNEGLSQTDAKSHDIDLEENSPTETSHNEKASHNEEDHN 84
S+KKE + + SQ +TN + + K + ID N+P E S + N
Sbjct: 170 SLKKEGFENTPSDSQK---KETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLN 226
Query: 85 NALSQNLDAQESINYPVVEHYSEIPFEEKKREYSKLIIKDLKD 127
N+ Q Q S + P HY+ P K+ + L LK+
Sbjct: 227 NSEPQEGLVQISPHPPT--HYTIYP---KRNRFDDLTNPTLKE 264
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 1.6
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 118 SKLIIKDLKDYQWWCLKEILKKEQI--DYAYDNTKNQPNLIIYLDENKKERLLAD 170
SK +KD K ++ + + + D+ DN +N+P L + L+ ++ L+AD
Sbjct: 120 SKDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIAD 174
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 23.9 bits (50), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 135 EILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADL 171
E+LK++ I A ++ P+LI L++N +ADL
Sbjct: 130 EVLKEKVITLANVSSLFPPDLIKALEDNDDPNRIADL 166
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.9 bits (50), Expect = 2.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 27 KKEMPATSHAISQTHAISQTNEGLSQTDAKSHDIDLEENSPTETSHNEKASHNEEDHNNA 86
KKE+ + +QT + T + +S + + L+E + + N+ N NNA
Sbjct: 123 KKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNA 182
Query: 87 LS 88
S
Sbjct: 183 NS 184
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 22.7 bits (47), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
Query: 122 IKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKKERLLADLD 172
I++LKD KE++ + + TKN PN+ + E E LA L+
Sbjct: 145 IEELKD------KELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLN 189
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 22.7 bits (47), Expect = 6.2
Identities = 13/51 (25%), Positives = 21/51 (40%)
Query: 50 LSQTDAKSHDIDLEENSPTETSHNEKASHNEEDHNNALSQNLDAQESINYP 100
+ T+ KSH + EE PT T + N +++ +NYP
Sbjct: 176 IPNTEEKSHFLLEEEYLPTHTIFLSDQEESFVKENYYIAKENQKVACVNYP 226
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 22.7 bits (47), Expect = 6.2
Identities = 14/37 (37%), Positives = 18/37 (47%), Gaps = 5/37 (13%)
Query: 116 EYSKLIIKDLKDYQWW-----CLKEILKKEQIDYAYD 147
E S K + D + W LKE LK+ +IDY D
Sbjct: 394 ELSTRPAKSIGDDKVWEKATNALKEALKEHRIDYKID 430
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 22.3 bits (46), Expect = 8.1
Identities = 10/46 (21%), Positives = 25/46 (53%)
Query: 119 KLIIKDLKDYQWWCLKEILKKEQIDYAYDNTKNQPNLIIYLDENKK 164
+L++ D+K ++ L++ KE Y + +++ + L+E K+
Sbjct: 84 RLVLTDIKPPIFYALQQTHSKELASYVAQSLQDEISAYFSLEELKE 129
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,517
Number of Sequences: 1491
Number of extensions: 10995
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 182
length of database: 494,079
effective HSP length: 72
effective length of query: 110
effective length of database: 386,727
effective search space: 42539970
effective search space used: 42539970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)