BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644672|ref|NP_206842.1| hypothetical protein
[Helicobacter pylori 26695]
(123 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 205 3e-55
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 27 0.22
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 0.65
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 25 0.85
ref|NP_223405.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacte... 23 2.5
ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPH... 23 2.5
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223376.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 22 4.2
ref|NP_223245.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 22 5.5
ref|NP_222912.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phospha... 22 5.5
ref|NP_224153.1| putative [Helicobacter pylori J99] 21 9.3
ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFER... 21 9.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 9.3
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 205 bits (521), Expect = 3e-55
Identities = 102/116 (87%), Positives = 107/116 (91%), Gaps = 2/116 (1%)
Query: 1 MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
MNKW+KGA+VFVGGFATI T SLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP
Sbjct: 1 MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQP 60
Query: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTF 116
TNTESSKDATIKALQEQLKAALKALNSKEMN+SKEETF +PP+D K TP KK F
Sbjct: 61 TNTESSKDATIKALQEQLKAALKALNSKEMNYSKEETFTSPPMDPK--TTPPKKDF 114
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.6 bits (57), Expect = 0.22
Identities = 21/69 (30%), Positives = 36/69 (51%), Gaps = 7/69 (10%)
Query: 44 EVKYPLQDYTFTQNPQPTNTESSKDATIKALQ----EQLKA-ALKALNSKEMNHSKEETF 98
E++ LQ+Y + TE+ K+ +K L E+LK AL L + + + ++E
Sbjct: 432 ELQKELQEYK--DCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECL 489
Query: 99 KNPPIDLKQ 107
KN P DL++
Sbjct: 490 KNIPQDLQK 498
Score = 25.0 bits (53), Expect = 0.65
Identities = 26/105 (24%), Positives = 49/105 (45%), Gaps = 3/105 (2%)
Query: 18 IITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQ 77
+I +L ++ P L N ++ ++ K PL+ + + E K K LQ+Q
Sbjct: 294 MIDKNLFFNDDPNRTLYNYLNIAEIED-KNPLRAFYECISNGGNYEECLKLIKDKKLQDQ 352
Query: 78 LKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTFLQSNGI 122
+K L+A N + ++K E + +DL + + LKK+ L +
Sbjct: 353 MKKTLEAYNDC-IKNAKTEEERIKCLDLIKDEN-LKKSLLNQQKV 395
Score = 24.6 bits (52), Expect = 0.85
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 32 PLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAALKALNSKEMN 91
P + Q LL D VK +D + E K T +A + AL L + + +
Sbjct: 493 PQDLQKELLADMSVK-AYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTD 551
Query: 92 HSKEETFKNPPIDLK 106
++E KN P DL+
Sbjct: 552 EERKECLKNLPKDLQ 566
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 25.0 bits (53), Expect = 0.65
Identities = 15/63 (23%), Positives = 32/63 (49%), Gaps = 2/63 (3%)
Query: 63 TESSKDATIKALQEQLKAALKALN--SKEMNHSKEETFKNPPIDLKQTQTPLKKTFLQSN 120
+E +K +++K ++L+ +AL +KE NH + + DLK+ + L+ F
Sbjct: 404 SEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENEK 463
Query: 121 GIY 123
++
Sbjct: 464 EVF 466
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 24.6 bits (52), Expect = 0.85
Identities = 16/81 (19%), Positives = 37/81 (44%), Gaps = 11/81 (13%)
Query: 40 LNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAALKAL-----------NSK 88
LN++EVK + + P+P + K+A ++ Q + + + K
Sbjct: 430 LNEEEVKTLEEVKNIIKTPKPLQKDLKKNAKKHTIKTQYCVPIPYIERLKTTDGLEKHQK 489
Query: 89 EMNHSKEETFKNPPIDLKQTQ 109
+N++K++ NP ++K+ +
Sbjct: 490 GLNNTKKQIQANPIEEIKENK 510
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.9 bits (50), Expect = 1.4
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 3/74 (4%)
Query: 23 LIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKAAL 82
L ++K L Q S L L+D+ F+Q + N SS D ++ E L
Sbjct: 90 LTNYRKSLDHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSNDVILQVAFENLH--- 146
Query: 83 KALNSKEMNHSKEE 96
++ SK S+EE
Sbjct: 147 QSTLSKMSQLSQEE 160
>ref|NP_223818.1| GLUCOSE/GALACTOSE TRANSPORTER [Helicobacter pylori J99]
Length = 407
Score = 23.1 bits (48), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 8 AIVFVGGFATIITISLIYHQKP 29
A+ F+ GF T++ LI H KP
Sbjct: 15 ALFFLMGFITVLNDILIPHLKP 36
>ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
[Helicobacter pylori J99]
Length = 491
Score = 23.1 bits (48), Expect = 2.5
Identities = 13/41 (31%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
Query: 76 EQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKKTF 116
++ + + AL KE N K + FK I T TP +F
Sbjct: 249 DRAREIVSALGQKEFNSFKRQAFKKLHI---ATMTPYDNSF 286
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 23.1 bits (48), Expect = 2.5
Identities = 16/71 (22%), Positives = 33/71 (45%), Gaps = 4/71 (5%)
Query: 48 PLQDYT--FTQNPQPTNTESSKDATIKALQEQLKAALKALNSKEMNHSKEETFKN--PPI 103
P+++ T + Q +S ++A+QE +K + N +E +ET +N P
Sbjct: 250 PIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQ 309
Query: 104 DLKQTQTPLKK 114
D++ + + K
Sbjct: 310 DIETQELEIPK 320
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 22.7 bits (47), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 62 NTESSKDATIKALQEQLKAALKALNSKEMN 91
NT+ A +A Q+ +K ALK N ++M+
Sbjct: 76 NTDKMTVADFEARQKAIKEALKKGNMEDMD 105
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 22.3 bits (46), Expect = 4.2
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 51 DYTFTQNPQPTNTESSKDATIKA-LQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQ 107
D T +P ++ T+K LK + S NH K E K P +K+
Sbjct: 256 DLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNTENHDKTENHKTPNHPIKE 313
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 21.9 bits (45), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (49%)
Query: 5 LKGAIVFVGGFATIITISLIYHQKPKAPLNNQ 36
LK A FVG F + I + + P A +NQ
Sbjct: 8 LKHAAFFVGLFIVLFLIIMKHQTSPYAFTHNQ 39
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 21.9 bits (45), Expect = 5.5
Identities = 18/86 (20%), Positives = 36/86 (40%), Gaps = 5/86 (5%)
Query: 40 LNDDEVKYPLQDYTFTQN-----PQPTNTESSKDATIKALQEQLKAALKALNSKEMNHSK 94
+N++++ L D ++ Q T +K L Q + + LN +E++ +
Sbjct: 388 INENQIIKTLHDAKVSEGIISLYEQLTEIFEPSQLVLKLLSLQFETSKIGLNQQEIDAIQ 447
Query: 95 EETFKNPPIDLKQTQTPLKKTFLQSN 120
K P K+TQ +F +S+
Sbjct: 448 NPKEKTPKPPNKKTQHEPAHSFKKSH 473
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.9 bits (45), Expect = 5.5
Identities = 12/44 (27%), Positives = 19/44 (42%)
Query: 33 LNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQE 76
L+N P +L DD+ K ++ + N E TI L +
Sbjct: 805 LDNHPIVLTDDDRKCVFNQQATSERFKRANEEMHDPITILQLSD 848
>ref|NP_222725.1| 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase [Helicobacter
pylori J99]
Length = 276
Score = 21.9 bits (45), Expect = 5.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 26 HQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQN 57
H PK L++ ++L DE+++ + D QN
Sbjct: 243 HIDPKNALSDGANMLKPDELEHLVTDMLKIQN 274
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 21.2 bits (43), Expect = 9.3
Identities = 11/48 (22%), Positives = 21/48 (42%)
Query: 67 KDATIKALQEQLKAALKALNSKEMNHSKEETFKNPPIDLKQTQTPLKK 114
+D K L + L+ + KE+ H K + K ++ + L+K
Sbjct: 158 EDLDFKGLLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLKEKLEK 205
>ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE [Helicobacter pylori
J99]
Length = 429
Score = 21.2 bits (43), Expect = 9.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 31 APLNNQPSLLNDDEVKYPLQDYTFTQNPQPTN 62
A + NQ +L ++ PL+ + FT P++
Sbjct: 194 ANIQNQDGVLKISPLEKPLESFDFTIANDPSS 225
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.2 bits (43), Expect = 9.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 66 SKDATIKALQEQLKAALKALNSKEMNHSKEETFK 99
S++ IK + + KA +KA+ + +K+E K
Sbjct: 434 SEEVLIKGAKTRYKANIKAIELLKELQAKQEILK 467
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,597
Number of Sequences: 1491
Number of extensions: 5908
Number of successful extensions: 26
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 20
length of query: 123
length of database: 494,079
effective HSP length: 67
effective length of query: 56
effective length of database: 394,182
effective search space: 22074192
effective search space used: 22074192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 43 (21.2 bits)