BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645032|ref|NP_207202.1| protein kinase C inhibitor
(SP:P16436) [Helicobacter pylori 26695]
(104 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223694.1| HIT FAMILY PROTEIN [Helicobacter pylori J99] 211 3e-57
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 29 0.024
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 24 0.77
ref|NP_223201.1| cag island protein [Helicobacter pylori J99] 23 1.7
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 23 2.3
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 22 3.8
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 21 6.6
ref|NP_223724.1| putative [Helicobacter pylori J99] 21 8.6
>ref|NP_223694.1| HIT FAMILY PROTEIN [Helicobacter pylori J99]
Length = 104
Score = 211 bits (538), Expect = 3e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNVFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPELMAQMT 60
MNVFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPELMAQMT
Sbjct: 1 MNVFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPELMAQMT 60
Query: 61 SFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSGDKH 104
SFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSGDKH
Sbjct: 61 SFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSGDKH 104
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 29.3 bits (64), Expect = 0.024
Identities = 18/44 (40%), Positives = 28/44 (62%), Gaps = 7/44 (15%)
Query: 66 VVEKLGIKEKGY---KLLTNVGKNAGQEVMHLHF----HILSGD 102
V+EKLG+K+ + KL+T +NA ++V +LHF H+L D
Sbjct: 566 VMEKLGLKDGEHIESKLVTRAVENAQKKVENLHFESRKHLLEYD 609
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 24.3 bits (51), Expect = 0.77
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 60 TSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101
T I E++ + K GY + VG+ +E L+F + G
Sbjct: 162 TVIIMELIHNVAYKHNGYSVFAGVGERT-REGNDLYFEMKEG 202
>ref|NP_223201.1| cag island protein [Helicobacter pylori J99]
Length = 126
Score = 23.1 bits (48), Expect = 1.7
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 48 FNGITPELMAQMTSFIFEVVEKLGIKE---KGYKLLTNVGKNAGQEVM 92
F G++ +L + + +F+F ++ +G+ E K + L + KN EV+
Sbjct: 41 FTGLSSDLFSMILNFLFFLMLMMGLNEALGKKFNLPMDNIKNFMAEVL 88
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 22.7 bits (47), Expect = 2.3
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 70 LGIKEKGYKLLTNVGKNAGQEVMHLH-FHIL-SGDKH 104
+GI K Y L +N N +E++ H F +L +G KH
Sbjct: 34 MGITPKDYDLTSNALVNESKELLLKHDFRVLETGIKH 70
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 21.9 bits (45), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 46 QDFNGITPELMAQMTSFIFEVVEKLGIKEKG 76
Q FN TP + S I +++K+G K +G
Sbjct: 196 QLFNQFTPLNNRDLESQIESMMDKVGFKSQG 226
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 21.2 bits (43), Expect = 6.6
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 15 SKILENERFLSFYDINPK 32
+K+L+ L Y++NPK
Sbjct: 42 NKLLQGASILQGYEVNPK 59
>ref|NP_223724.1| putative [Helicobacter pylori J99]
Length = 226
Score = 20.8 bits (42), Expect = 8.6
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 41 PKQSIQDFNGIT 52
PK S+ DFNG T
Sbjct: 159 PKASVLDFNGET 170
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,457
Number of Sequences: 1491
Number of extensions: 4764
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 494,079
effective HSP length: 65
effective length of query: 39
effective length of database: 397,164
effective search space: 15489396
effective search space used: 15489396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)