BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645034|ref|NP_207204.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223692.1| putative [Helicobacter pylori J99] 363 e-102
ref|NP_224063.1| putative thiophene/furan oxidation protein... 28 0.13
ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PRO... 28 0.13
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 27 0.37
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 26 0.62
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 26 0.81
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 26 0.81
ref|NP_224175.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 25 1.1
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 25 1.4
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 25 1.4
ref|NP_223881.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223055.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 3.1
ref|NP_223642.1| putative [Helicobacter pylori J99] 24 3.1
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 3.1
ref|NP_223491.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 23 4.0
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 23 4.0
ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobact... 23 4.0
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 23 4.0
ref|NP_222772.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter... 23 5.3
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 5.3
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 6.9
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 23 6.9
ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori ... 23 6.9
ref|NP_222993.1| putative [Helicobacter pylori J99] 23 6.9
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 6.9
ref|NP_224090.1| putative [Helicobacter pylori J99] 22 9.0
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 22 9.0
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 22 9.0
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 363 bits (932), Expect = e-102
Identities = 189/196 (96%), Positives = 192/196 (97%)
Query: 1 MDILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILEL 60
MDILDLNKAQAVQQNEQEVEDKE+ESKEPVVLEDLSALAWLELEEFSRLS LPKERILEL
Sbjct: 1 MDILDLNKAQAVQQNEQEVEDKEKESKEPVVLEDLSALAWLELEEFSRLSELPKERILEL 60
Query: 61 VNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLH 120
VN+GKIKSKIS NKLLIDASSGTNALIKKVEN+LISMDMNGRSLEPVFVEKTINTILNLH
Sbjct: 61 VNIGKIKSKISHNKLLIDASSGTNALIKKVENNLISMDMNGRSLEPVFVEKTINTILNLH 120
Query: 121 DKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKY 180
DKVI AKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLL DELNQAREEIEFMKRKY
Sbjct: 121 DKVISAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLHDELNQAREEIEFMKRKY 180
Query: 181 RLMWGKVADMSSVNKK 196
RLMWGKVADMSSVNKK
Sbjct: 181 RLMWGKVADMSSVNKK 196
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 28.5 bits (62), Expect = 0.13
Identities = 16/61 (26%), Positives = 30/61 (48%)
Query: 106 PVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDE 165
P+ + + LNL ++ A + + AF N M L + S+Q + ED+ ++ L +
Sbjct: 96 PLLAQNILQACLNLGARLAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQ 155
Query: 166 L 166
L
Sbjct: 156 L 156
>ref|NP_223496.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 333
Score = 28.5 bits (62), Expect = 0.13
Identities = 15/39 (38%), Positives = 20/39 (50%)
Query: 156 KKTIDLLRDELNQAREEIEFMKRKYRLMWGKVADMSSVN 194
KK I RDEL Q+ +EF + R G V D+ +N
Sbjct: 37 KKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLN 75
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.9 bits (58), Expect = 0.37
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 27 KEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLI---DASSGT 83
K PV +E L EL +F+++S + K+ I +N I+S ++ L+ D+ T
Sbjct: 53 KMPVDIEALKLSVQSELNKFAKVSQISKQNIQ--LNQALIQSLENAQGLMAKRGDSFIAT 110
Query: 84 NALI-----------------KKVENSLISM-----------DMNGRSLEPVFVEKTINT 115
+A + K+++ +L S+ D N SLE ++ T
Sbjct: 111 DAYLLANMNLFESVLKPYLDTKELQKTLESLRKGRTIQDKNDDSNLESLEKFGIDLTQKA 170
Query: 116 ILNLHDKVIGAKDETI 131
+ N D VIG +E I
Sbjct: 171 LENKLDPVIGRDEEII 186
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 26.2 bits (56), Expect = 0.62
Identities = 20/89 (22%), Positives = 42/89 (46%), Gaps = 11/89 (12%)
Query: 77 IDASSGTNALI--KKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIGAKDETISAF 134
+DA++ N I K + ++ +D R L P + + H ++ + + +
Sbjct: 322 LDATTVLNRKIAEKGIYPAVDPLDSTSRILSPQMIGEK-------HYEIATGIQQVLQKY 374
Query: 135 KNENMFLKDALISMQEVYEEDKKTIDLLR 163
K+ + A++ + E+ EEDKKT++ R
Sbjct: 375 KDLQDII--AILGLDELSEEDKKTVERAR 401
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 25.8 bits (55), Expect = 0.81
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 9/46 (19%)
Query: 107 VFVEKT-----INTILNLHDK----VIGAKDETISAFKNENMFLKD 143
V VEK +N + NL D ++G DE I FK++ +F D
Sbjct: 388 VIVEKDRKKAILNALENLKDDEVLLILGKGDENIQIFKDKTIFFSD 433
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 25.8 bits (55), Expect = 0.81
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 75 LLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIGAKDETISAF 134
+++D +SG + K+ E S + +N L P + + TI N K + + DE I F
Sbjct: 223 IILDETSGKK-MSKRDEASSVKWLLNQGFL-PEAIANYLITIGNKVPKEVFSLDEAIEWF 280
Query: 135 KNENMFLKDALISMQEVYEEDKKTIDLLRDE 165
EN+ A +++ + + + + LL D+
Sbjct: 281 SLENLSSSPAHFNLKYLKHLNHEHLKLLDDD 311
>ref|NP_224175.1| putative [Helicobacter pylori J99]
Length = 136
Score = 25.4 bits (54), Expect = 1.1
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 48 RLSGLPKERILELVNLGKIKSKISSNKLLID 78
+ +G + ++E++ LG++ KIS+ +L+++
Sbjct: 75 KFTGTVEAEVVEIMPLGRLDGKISTQELVVE 105
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.4 bits (54), Expect = 1.1
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 29/122 (23%)
Query: 2 DILDLNKAQAVQQNE--QEVEDKERESKEPV---VLEDLSALAWLELEEFSR-LSGLPKE 55
D++ Q NE +++E +++ KE ++ + + +++E+++ GL K
Sbjct: 395 DLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKS----DIQEYNKKYCGLEK- 449
Query: 56 RILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINT 115
+ ++ +IS N+ +KK+EN + ++ N S++P+ E INT
Sbjct: 450 ------GINNLEKEISENQ----------EKVKKLENEIKELEKNMVSIKPIVNE--INT 491
Query: 116 IL 117
+L
Sbjct: 492 LL 493
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 25.4 bits (54), Expect = 1.1
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 44/162 (27%)
Query: 12 VQQNEQEVEDKERESKEPV--VLEDLSALAWLELEEFSRLSGLPKERILELVNLGKIKSK 69
V+ E+E ERE + V +++ L+ + + EE S P+ + S
Sbjct: 94 VEDTPCEIETIEREFGQDVANLVDALTKITEIRKEELGVSSQDPR----------MVVSA 143
Query: 70 ISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIGAKDE 129
++ K+LI A AL+ K+ + L +M T++ + HDK + E
Sbjct: 144 LTFRKILISAIQDPRALVVKISDRLHNM-------------LTLDAL--PHDKQVRISKE 188
Query: 130 TI------------SAFKNENMFLKDALISMQEVYEEDKKTI 159
T+ S+ KNE L+D S +Y E+ K I
Sbjct: 189 TLAVYAPIASRLGMSSIKNE---LEDK--SFYYIYPEEYKNI 225
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 25.0 bits (53), Expect = 1.4
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 27 KEPVVLEDLSALAWLELEEFSRL--------SGLPKERILELVNLGKIKSKISSNKL 75
++ +++ D S ++ + +FS L S LP++ IL L+N +K ++S L
Sbjct: 78 EKKLIISDRSLISGMAYSQFSSLELNLLATQSVLPEKIILLLINKENLKQRLSLKSL 134
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 25.0 bits (53), Expect = 1.4
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 6 LNKAQAVQQNEQE----VEDKERESKEPVVLE------DLSALAWLELEEF 46
LNK ++ +++E +ED ++S EPV++E +LS A + ++F
Sbjct: 149 LNKNTSIVHHQEEALKILEDALKQSNEPVIIEPFLEGFELSVTALIANDDF 199
>ref|NP_223881.1| putative [Helicobacter pylori J99]
Length = 76
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 126 AKDETISAFKNENMFLKDALISMQEVYEEDKKT 158
A D IS K + + LKD + SM Y E +K+
Sbjct: 41 ASDAEISHMKKQKLKLKDEIHSMIIEYREKQKS 73
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 24.3 bits (51), Expect = 2.4
Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 5/84 (5%)
Query: 19 VEDKERESKEPVVLEDLSALAWLELEEFSRLSGLPKERILELVNLGKIKSKISSNKLLID 78
+++ + K P LE+ L WL +R + PKER+ LV L KI++ + +
Sbjct: 573 LKEAYEKDKNPHALEE--RLIWLSE---TRENVTPKERLDTLVALKKIQAFYKKERERFN 627
Query: 79 ASSGTNALIKKVENSLISMDMNGR 102
A L K E + + GR
Sbjct: 628 AEITILDLEKSFETIIQGVIFKGR 651
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 141 LKDALISMQEVYEEDKKTIDLLRDEL 166
L+ IS E+Y D K++ LRDE+
Sbjct: 552 LETVRISQDEIYTVDGKSVLRLRDEV 577
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 23.9 bits (50), Expect = 3.1
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 8 KAQAVQQNEQEVEDKERESKE 28
K + ++ E+E+E KE+E KE
Sbjct: 157 KETSKEEKEEELESKEKEPKE 177
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 23.9 bits (50), Expect = 3.1
Identities = 14/64 (21%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 114 NTILNLHDKVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEI 173
N + L + + +D T + + + + + A ++ E+ EE+KKT+ + + +E
Sbjct: 31 NAFMKLFLEQLKNQDPT-APMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSNKETN 89
Query: 174 EFMK 177
E +K
Sbjct: 90 ESLK 93
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 23.5 bits (49), Expect = 4.0
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 55 ERILELVNLGKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGR------SLEPVF 108
+ +L +NL +I + +L + NAL + E +I + + GR SL
Sbjct: 161 DAVLNALNLNQIIEQDLDADILESLETPNNALEETKEEEIIQVGIIGRVNVGKSSLLNAL 220
Query: 109 VEKTINTILNLHDKVIGAKDETI 131
+K + + ++ I DETI
Sbjct: 221 TKKERSLVSSVAGTTIDPIDETI 243
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 10 QAVQQNEQEVEDKERESKEPVVLEDLSALAWLE 42
+ +N QE+ +E+ S E +LE+ +L LE
Sbjct: 357 EIAMKNAQEIFSQEKTSNEDRILEEARSLFNLE 389
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 23.5 bits (49), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 16 EQEVEDKERESKEPVVLE-DLSALAWLELE 44
EQ+VE K+ E K+PV E D + L++L E
Sbjct: 158 EQKVEQKKIEEKKPVKKEFDPNQLSFLPKE 187
>ref|NP_223170.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
Length = 374
Score = 23.5 bits (49), Expect = 4.0
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 7/68 (10%)
Query: 30 VVLEDLSALAWLELEEFSRLSG-------LPKERILELVNLGKIKSKISSNKLLIDASSG 82
VV D L++ +LE+ S S LPK +LE++ L S+ +L +
Sbjct: 170 VVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENE 229
Query: 83 TNALIKKV 90
T+A K+
Sbjct: 230 THAFFTKL 237
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 23.5 bits (49), Expect = 4.0
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 85 ALIKKVENSLISMDMNGRSLEPVFVEKTINTILNLHDKVIGAKDETISAFKNENMFLKDA 144
++ K N+ + + NG ++P + K + + A TI+AF ++ +K+
Sbjct: 302 SVYKNFGNASVQLGWNGSPIDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKS--IKNL 359
Query: 145 LISM 148
L+ +
Sbjct: 360 LVQL 363
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.5 bits (49), Expect = 4.0
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 3 ILDLNKAQAVQQNEQEVEDKERESKEPVVLEDLSALAWLELEEF-SRLSGLPKERILELV 61
+L+ KA +++ E +D+E +KE L + + + E E + L KE+
Sbjct: 83 VLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQK 142
Query: 62 NLGKIKS 68
+ ++K+
Sbjct: 143 QVNELKN 149
>ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter pylori J99]
Length = 412
Score = 23.1 bits (48), Expect = 5.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 72 SNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVEKT-INTILNLHDKVIGAKDET 130
+N++ + + SG L NS+ + R + P F+ +N I G K
Sbjct: 101 ANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPN 160
Query: 131 ISA 133
+S+
Sbjct: 161 LSS 163
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.1 bits (48), Expect = 5.3
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 61 VNLGKIKSKISSNKLLID-ASSGTNALIKKVENSLISMDMN-------GRSLEPVF-VEK 111
+N+ KIK +SN +L + +G L K+ S M+ R+L +F E+
Sbjct: 278 LNIAKIKVVTNSNDVLREFIETGRYDLTKRSLKQTFSPAMDILKSSNVERALFSLFGFER 337
Query: 112 TINTILNLHDKVIGAKDETISAFKNENMFL-----KDALISMQEVYEEDKKTID 160
T+ + L ++ A A E+ +D L ++QEVY E + ID
Sbjct: 338 TLELMQALEEEKFYALKPKELALLQEHFSCASCSDEDCLKTIQEVYAEHQYLID 391
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 22.7 bits (47), Expect = 6.9
Identities = 22/111 (19%), Positives = 47/111 (41%), Gaps = 10/111 (9%)
Query: 63 LGKIKSKISSNKLLIDASSGT----NALIKKVENSLISMDMNGRSLEPVFVEKTINTILN 118
+G I+ +IS + L+ S + ++KK ++ + G ++ LN
Sbjct: 549 VGAIQQEISEHSLIKQVFSAEELEKSGMVKKGYYGVLFETLEGLGFGEKTDDENFKLTLN 608
Query: 119 LHD------KVIGAKDETISAFKNENMFLKDALISMQEVYEEDKKTIDLLR 163
++ ++ KDE F+ FLKD LI V ++++ + ++
Sbjct: 609 QNEFLKKEPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNKNERKTEKIK 659
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 22.7 bits (47), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 30 VVLEDLSALAWLE---LEEFSRLSGLPKERILEL 60
++ +D L W LE+ +R+S LPK+ +E+
Sbjct: 95 IIFKDGVNLYWARDRVLEQLNRVSNLPKDAKVEI 128
>ref|NP_223224.1| ACYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 78
Score = 22.7 bits (47), Expect = 6.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 52 LPKERILELVNLGKIKSKISSNKL 75
+P E+ ++VN+G + I NKL
Sbjct: 54 IPDEQAEKIVNVGDVVKYIEDNKL 77
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 22.7 bits (47), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 133 AFKNENMFL--KDALISMQEVYEEDKKTIDLLRDELNQAREEIEFM 176
AFK +FL KD M Y+E L R + + EE+EF+
Sbjct: 68 AFKRLQLFLFQKDPQSYMDNFYKEVGLDAQLERFKKEGSLEELEFL 113
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.7 bits (47), Expect = 6.9
Identities = 35/184 (19%), Positives = 79/184 (42%), Gaps = 11/184 (5%)
Query: 15 NEQEVEDKER-ESKEPVVLEDLSALAWLELEEFSR-LSGLPKERILELVNLGKIKSKIS- 71
NE ++ +E ++ + + ++E +F++ ++ +PK + L+ + I S I
Sbjct: 371 NENILKTQESIQADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQALR-NTINSIIQY 429
Query: 72 -SNKLLIDASSGTNALIKKVENSLISMDMNGRSLEP-VFVEKTINTILNLHDKVIGAKDE 129
N++ D S NAL ++D P +EK +NT+ ++ A
Sbjct: 430 FRNQIGADIESLNNAL-----EHYKNLDFTHHIQNPKANMEKALNTLGQEISSMLKASLG 484
Query: 130 TISAFKNENMFLKDALISMQEVYEEDKKTIDLLRDELNQAREEIEFMKRKYRLMWGKVAD 189
+A +E+ LK + ++ + + ++++ L + I + K + M + D
Sbjct: 485 FANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITMIDSKSQEMISQGED 544
Query: 190 MSSV 193
+ SV
Sbjct: 545 IKSV 548
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 22.3 bits (46), Expect = 9.0
Identities = 11/37 (29%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Query: 119 LHDKVIGAK---DETISAFKNENMFLKDALISMQEVY 152
+H K+ K ++TIS K+ F K L + +++Y
Sbjct: 27 IHSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLY 63
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 22.3 bits (46), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 1 MDILDLNKAQAVQQNEQEVEDKER 24
+ I DL K AV EQE E +ER
Sbjct: 267 LQIRDLAKGCAVLYKEQEEEREER 290
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 22.3 bits (46), Expect = 9.0
Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 24/205 (11%)
Query: 6 LNKAQAVQQNEQEVEDKERESKEPV--VLEDLSALAWLELEEFSRLSGLPKERILELVNL 63
+ ++Q +++ E + +ESK+ + + ++ A E E S++ L + N
Sbjct: 339 IEQSQGLRKRLIETQGLVKESKDAIGDLFSQITESAHTEEELSSKVEQLSR-------NA 391
Query: 64 GKIKSKISSNKLLIDASSGTNALIKKVENSLISMDMNGRSLEPVFVE------KTINTIL 117
+KS + ++ D + TN L +GR V E +T ++
Sbjct: 392 DDVKSILD---IINDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAGRTQKSLA 448
Query: 118 NLHDKVIGAKDETISAFKNENMF------LKDALISMQEVYEEDKKTIDLLRDELNQARE 171
++ ++ E N+ L D S+QE YE+ + + + NQ+ +
Sbjct: 449 EINSTIMVIVQEINDVSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVLDSNQSMD 508
Query: 172 EIEFMKRKYRLMWGKVADMSSVNKK 196
+ + M A++ V K
Sbjct: 509 DYAKSGHQIEAMVSDFAEVEKVASK 533
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.130 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,332
Number of Sequences: 1491
Number of extensions: 9091
Number of successful extensions: 59
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 34
length of query: 196
length of database: 494,079
effective HSP length: 73
effective length of query: 123
effective length of database: 385,236
effective search space: 47384028
effective search space used: 47384028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)