BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645036|ref|NP_207206.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223690.1| putative [Helicobacter pylori J99] 257 9e-71
ref|NP_223258.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223034.1| putative cell division topological specifi... 25 1.0
ref|NP_223891.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223218.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223759.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 23 3.9
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 5.1
ref|NP_223150.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_222977.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 22 8.8
>ref|NP_223690.1| putative [Helicobacter pylori J99]
Length = 164
Score = 257 bits (657), Expect = 9e-71
Identities = 131/163 (80%), Positives = 146/163 (89%), Gaps = 3/163 (1%)
Query: 1 MNIFQTSLKCCVGLVLSVGVLLGDS-KAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFV 59
M++FQTSL CVGL+ GVLLGDS KA KVRVDK LTPPFLNVLSLAFKQDMK ++IFV
Sbjct: 1 MSVFQTSL--CVGLLFFGGVLLGDSSKALKVRVDKGLTPPFLNVLSLAFKQDMKTDLIFV 58
Query: 60 ITKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKENKTLYAFSLIDSQYCS 119
+TKSNKLSKKVLCDFDAFLL E +MS MP KALFHKEFLFQSKENKTLY FSLI+SQYCS
Sbjct: 59 VTKSNKLSKKVLCDFDAFLLSEAVMSDMPAKALFHKEFLFQSKENKTLYVFSLINSQYCS 118
Query: 120 KGGNYRYELEKLERWFVQKAPELAESYRVNYKNQYNKTQISQK 162
KGGNYR++LE+LERWFVQKAPELAES+RV+YK+QY+KTQ K
Sbjct: 119 KGGNYRHKLERLERWFVQKAPELAESHRVDYKSQYDKTQTKIK 161
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 25.0 bits (53), Expect = 1.0
Identities = 22/86 (25%), Positives = 34/86 (38%), Gaps = 8/86 (9%)
Query: 59 VITKSNKLSKKVLCDFDAFLLPETLMSGMPKKALFHKEFLFQSKE--------NKTLYAF 110
V+ + N + ++L D + + + LF K L Q +E N T A
Sbjct: 165 VLKQENITNTQILHIGDNSWADDAMPKSLGIATLFRKSVLKQLEEVFPKYKTFNPTSVAQ 224
Query: 111 SLIDSQYCSKGGNYRYELEKLERWFV 136
S I C NY + EK + WF+
Sbjct: 225 SFILGSLCVFYKNYIQKHEKFDYWFL 250
>ref|NP_223034.1| putative cell division topological specificity factor
[Helicobacter pylori J99]
Length = 77
Score = 25.0 bits (53), Expect = 1.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 44 LSLAFKQDMKKEVIFVITKSNKLS 67
L+L + ++M+KE+I VI K K S
Sbjct: 30 LNLPYMEEMRKEIIAVIQKYTKSS 53
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 24.6 bits (52), Expect = 1.4
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 34 KSLTPPFLNVLSLAFKQDMKKE---VIFVITKSNKLSKK--VLCDFDAFLLPETLMSGMP 88
+SL PF +A ++ K+ VIF + K + S +L F + G P
Sbjct: 84 QSLDEPFAEYPLIAKDAEVAKDNSYVIFTLDKRARFSNNAPILASDVKFSFDTIMKLGSP 143
Query: 89 ---------KKALF----HKEFLFQSKENKTL 107
KKA+ H +F+F++ ENK L
Sbjct: 144 LYRQYYQDVKKAVILDKHHVKFIFKTTENKEL 175
>ref|NP_223218.1| putative [Helicobacter pylori J99]
Length = 227
Score = 24.3 bits (51), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 45 SLAFKQDMKKEVIFVITKSNKLSKKVLCDFDAFL 78
S A +KK +F+ ++ LSKK+L DA L
Sbjct: 169 SQAENLSLKKCALFLGSEHEGLSKKILAKMDAIL 202
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 3.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 123 NYRYELEKLERWFVQKAPELAESYRV-------NYKNQY--NKTQ 158
N + E++KLE ++ L SY++ N NQ NKTQ
Sbjct: 123 NIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNKTQ 167
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 23.1 bits (48), Expect = 3.9
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 4/38 (10%)
Query: 1 MNIFQTSLKCCVGLVLSVGVLLGDSKAFKVRVDKSLTP 38
MN SL C L G L+G SK F + S+TP
Sbjct: 196 MNDTADSLDSCTAL----GALVGSSKVFFSCMQISMTP 229
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 22.7 bits (47), Expect = 5.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 101 SKENKTLYAFSLIDSQYCSKG 121
S+ENK Y L+ S+ C++G
Sbjct: 34 SEENKEPYDVILVSSKVCTQG 54
>ref|NP_223150.1| putative [Helicobacter pylori J99]
Length = 599
Score = 22.3 bits (46), Expect = 6.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 36 LTPPFLNVLSLAFKQDMKKEVIFVITKSNKLSKKVL 71
LTPP VL A + + E++ V + ++ KK+L
Sbjct: 554 LTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKIL 589
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.3 bits (46), Expect = 6.7
Identities = 16/89 (17%), Positives = 36/89 (39%)
Query: 22 LGDSKAFKVRVDKSLTPPFLNVLSLAFKQDMKKEVIFVITKSNKLSKKVLCDFDAFLLPE 81
L D K FK++ L PF + K +++++ + ++ + + FL
Sbjct: 124 LKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFLAKS 183
Query: 82 TLMSGMPKKALFHKEFLFQSKENKTLYAF 110
+ P++ + KE +N+ + F
Sbjct: 184 VFLEEQPEEFIESKEEDSMGMDNEAVDLF 212
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 21.9 bits (45), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 88 PKKALFHKEFLFQSKENKTLYAFSLIDSQY 117
P+K+ F F + K L AF QY
Sbjct: 294 PQKSTFKNLFYYSLNAKKRLNAFQQYSKQY 323
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,003
Number of Sequences: 1491
Number of extensions: 7779
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 11
length of query: 162
length of database: 494,079
effective HSP length: 71
effective length of query: 91
effective length of database: 388,218
effective search space: 35327838
effective search space used: 35327838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)