BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645039|ref|NP_207209.1| hypothetical protein
[Helicobacter pylori 26695]
         (105 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223825.1|  putative [Helicobacter pylori J99]               23  1.8
ref|NP_223809.1|  putative [Helicobacter pylori J99]               21  8.8

>ref|NP_223825.1| putative [Helicobacter pylori J99]
          Length = 253

 Score = 23.1 bits (48), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 2/43 (4%)

Query: 5  ILAVFLKNYAQKLENSAIITLHVKISGRSAVWLAHLVWDQGVE 47
          ILA   K+   K +  A+ T+H  + G +  WL+ L  +QG+E
Sbjct: 45 ILARMQKHAPFKFDFKAV-TVHYGL-GENLKWLSDLCQEQGIE 85



>ref|NP_223809.1| putative [Helicobacter pylori J99]
          Length = 386

 Score = 20.8 bits (42), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 3   LLILAVFLKNYAQKLENSAIITL 25
           +LI  +  KNY+QK+  S+++ L
Sbjct: 260 ILIHFLKAKNYSQKIALSSLLVL 282



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.328    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,718
Number of Sequences: 1491
Number of extensions: 3499
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 494,079
effective HSP length: 65
effective length of query: 40
effective length of database: 397,164
effective search space: 15886560
effective search space used: 15886560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 42 (20.8 bits)