BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645040|ref|NP_207210.1| hypothetical protein
[Helicobacter pylori 26695]
(32 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223687.1| putative [Helicobacter pylori J99] 65 4e-13
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 25 0.34
ref|NP_222859.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222755.1| putative [Helicobacter pylori J99] 22 2.9
ref|NP_222963.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_222864.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 21 4.9
ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99] 21 4.9
ref|NP_223906.1| NADH oxidoreductase I [Helicobacter pylori... 21 6.4
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 21 6.4
ref|NP_223358.1| DIACYLGLYCEROL KINASE [Helicobacter pylori... 21 6.4
ref|NP_223265.1| putative secretion/efflux abc transporter,... 21 6.4
>ref|NP_223687.1| putative [Helicobacter pylori J99]
Length = 32
Score = 64.7 bits (156), Expect = 4e-13
Identities = 30/32 (93%), Positives = 31/32 (96%)
Query: 1 MDSLEWGLLIFLILVFLVGIGYYIFMVFFSKD 32
MDSLEWGLLIFLILVFLVGIGYY+FMVF SKD
Sbjct: 1 MDSLEWGLLIFLILVFLVGIGYYVFMVFSSKD 32
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 25.0 bits (53), Expect = 0.34
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 1 MDSLEWGLLIFLILVFLVGIGYYI 24
M SL W L F L F+ G+GYYI
Sbjct: 1 MQSLSWLNLAFRWL-FITGLGYYI 23
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 22.7 bits (47), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 6 WGLLIFLILVFLVGIGYYIFMVFFS 30
W L I +L+F G+G +F+V F+
Sbjct: 7 WPLGIMSVLIF--GLGIVVFLVVFA 29
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 21.9 bits (45), Expect = 2.9
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 10 IFLILVFLVGIGYYIFMVF 28
+FL VF++G+ ++I +F
Sbjct: 244 LFLCCVFIIGVPFFINALF 262
>ref|NP_222963.1| putative [Helicobacter pylori J99]
Length = 351
Score = 21.6 bits (44), Expect = 3.8
Identities = 6/14 (42%), Positives = 13/14 (92%)
Query: 15 VFLVGIGYYIFMVF 28
++LVG+G+ +F++F
Sbjct: 327 LWLVGVGFLVFVMF 340
>ref|NP_222864.1| putative [Helicobacter pylori J99]
Length = 91
Score = 21.6 bits (44), Expect = 3.8
Identities = 9/22 (40%), Positives = 15/22 (67%), Gaps = 2/22 (9%)
Query: 8 LLIFLILVFLVGIGYYIFMVFF 29
L++F +L L+G GYY+ + F
Sbjct: 26 LIVFFLL--LLGFGYYLGKLLF 45
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 21.2 bits (43), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 10 IFLILVFLVGIGYYIFMVFFSKD 32
+F+I+ + G Y F +FSKD
Sbjct: 375 VFMIIGSVALCGIYPFAGYFSKD 397
>ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99]
Length = 255
Score = 21.2 bits (43), Expect = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 4 LEWGLLIFLILVFLVGIGYYIFMVFFSKD 32
++W + +F I++ L G YI +KD
Sbjct: 208 IKWAMSVFFIVLGLCTYGAYIKKGLENKD 236
>ref|NP_223906.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 329
Score = 20.8 bits (42), Expect = 6.4
Identities = 8/26 (30%), Positives = 12/26 (45%)
Query: 4 LEWGLLIFLILVFLVGIGYYIFMVFF 29
L+WG+ L + I +VFF
Sbjct: 238 LKWGMFFLAEYAHLFAFSFVISIVFF 263
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 20.8 bits (42), Expect = 6.4
Identities = 7/27 (25%), Positives = 15/27 (54%)
Query: 3 SLEWGLLIFLILVFLVGIGYYIFMVFF 29
+L+W ++ I F G+ +++ FF
Sbjct: 2 ALDWDFMLHSIPAFFKGLKLTLYISFF 28
>ref|NP_223358.1| DIACYLGLYCEROL KINASE [Helicobacter pylori J99]
Length = 128
Score = 20.8 bits (42), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 2 DSLEWGLLI 10
D LEWGLLI
Sbjct: 57 DFLEWGLLI 65
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 20.8 bits (42), Expect = 6.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 8 LLIFLILVFLVGIG 21
L++F+IL L+G+G
Sbjct: 274 LMVFIILSKLIGVG 287
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.343 0.162 0.521
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,506
Number of Sequences: 1491
Number of extensions: 867
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 13
length of query: 32
length of database: 494,079
effective HSP length: 8
effective length of query: 24
effective length of database: 482,151
effective search space: 11571624
effective search space used: 11571624
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 41 (20.4 bits)