BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645041|ref|NP_207211.1| transposase-like protein,
PS3IS [Helicobacter pylori 26695]
(268 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 469 e-134
ref|NP_223788.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 30 0.087
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 27 0.74
ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99] 26 0.96
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 1.6
ref|NP_223710.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_223331.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_223994.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_223642.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_223600.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_223971.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_223384.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_222824.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_223862.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 23 6.2
ref|NP_223856.1| putative role in outermembrane permeabilit... 23 8.1
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 469 bits (1207), Expect = e-134
Identities = 235/267 (88%), Positives = 243/267 (90%)
Query: 1 MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNELQEQYETNKDSPPKERKYKKSS 60
MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLN LQEQYE NKD PPKER KKSS
Sbjct: 1 MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYEKNKDLPPKERTRKKSS 60
Query: 61 ELDNAIKQCLRARDLPFSAVIAQQARMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN 120
ELD AIK L AR L FS+VIAQQ+RMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN
Sbjct: 61 ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN 120
Query: 121 NQGFSIKESDDECFKTFTLMKMPLLMRMHRRLPPNFKVKQISISCSHRKYFVSFSVEYEQ 180
NQGF IKESD+E FK FTLMKMPL+M MHR PP+ KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct: 121 NQGFFIKESDEERFKIFTLMKMPLMMCMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ 180
Query: 181 DITPIKNTKNGVGLDLNILDTACSCEINNHDKLTDFKQYQTDMKELLGIEIDEELDTKRL 240
DITPIKN KNGVGLDLNILD ACSC +NNH KLTDFK+Y TDMKELLGIEIDEELDTKRL
Sbjct: 181 DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKELLGIEIDEELDTKRL 240
Query: 241 IPTYSKLYSLKKYSKKFKRLQRKQSRR 267
IPTYSKLYSLKK+SKKFKRLQRKQSRR
Sbjct: 241 IPTYSKLYSLKKHSKKFKRLQRKQSRR 267
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 35.0 bits (79), Expect = 0.002
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 15 KEQQDKLQHCFFVYNQAYNIGLNELQEQYET------NKDSPPKERKYKKSSELDNAIKQ 68
K+ + + Q F +A+ +NE + QY++ K+ KER ++ ++ D A+KQ
Sbjct: 26 KQIESENQSRFLAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQ 85
Query: 69 CLRARDLPFSAVIAQQARMN-VERALKDAFKVKNRG 103
SA+ Q R +E A K+AF + +G
Sbjct: 86 A--------SALALQDERAKIIEEARKNAFLEQQKG 113
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 29.6 bits (65), Expect = 0.087
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Query: 222 DMKELLGIEIDEELDTKRLIPTYSKLYSLK--KYSKKFKRLQRKQSRR 267
+ ELL + I E+D + KL LK K+ K+ K LQ+KQ +
Sbjct: 127 EASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKHK 174
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.6 bits (57), Expect = 0.74
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Query: 40 QEQYETNKDSPPKERKY--KKSSELDNAIKQCLRARD 74
+E+ E K P+ RK+ K+ + D AIK CL+ D
Sbjct: 1255 KEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNAD 1291
>ref|NP_222789.1| UREASE BETA SUBUNIT [Helicobacter pylori J99]
Length = 569
Score = 26.2 bits (56), Expect = 0.96
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 179 EQDITPIKNTKNGVGLDLNILDTACSCEIN 208
E+ + P+KN +N D+ DT E+N
Sbjct: 510 ERQVLPVKNCRNITKKDMQFNDTTAHIEVN 539
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 25.4 bits (54), Expect = 1.6
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 37 NELQEQYETNKDSPPKERKYKKSSELDNAIKQCLRARDLPFSAVIAQQARMNVERALKDA 96
N +++ + S PK Y+K S L N + R + L + + Q ++ K
Sbjct: 855 NNTRKRIIEKEASDPKY--YEKLSSLLNDLILQFREKKLTYLEYLQQ-----IQDLAKKV 907
Query: 97 FKVKNRGFPKFKNSKSAKQSFSWNNQGFSIKESDDECFK 135
++R +PK N+K+ K + ++ ++ D C +
Sbjct: 908 IDKEDRNYPKKINTKALKTLYDNLDENEALALETDACIR 946
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.0 bits (53), Expect = 2.1
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 149 HRRLPPNFKVKQISISCSHRKYFVSFSVEYEQDITPIKNTKNGVGLDLNILDTACSCEIN 208
H+ LP K + CS +F++ + + +QDI + G+ + +L A
Sbjct: 56 HKSLP---KPLIYDLGCSTGNFFIALNQQIQQDIELV-----GIDNSMPMLKKA------ 101
Query: 209 NHDKLTDFKQYQTDMKELLGIEIDE 233
+KL DF + + + L ++ E
Sbjct: 102 -QEKLKDFNNVRFECMDFLEVKFKE 125
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.6 bits (52), Expect = 2.8
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 209 NHDKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQ 264
N+ ++DF + + + + + + + +++D T SK+ +L+K K + + KQ
Sbjct: 79 NNANVSDFFRLDSTLMQNMSLGLSQKVDLNGKKLTQSKMINLEKQKKILELKKTKQ 134
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 24.6 bits (52), Expect = 2.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 208 NNHDKLTDFKQYQ-TDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFKRLQRKQSR 266
N L +FK TD + L EE + K +IP + L+ K +K+ K KQ+
Sbjct: 518 NRDSSLKNFKNIALTDSLDYL-----EEKNDKGVIPGFEYLFEDLKENKEIKTTMEKQNI 572
Query: 267 R 267
R
Sbjct: 573 R 573
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 24.3 bits (51), Expect = 3.7
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 220 QTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSKKFK 258
+ K++ +E++ K+++ Y + YS+ SK+FK
Sbjct: 113 ENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFK 151
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 24.3 bits (51), Expect = 3.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 33 NIGLNELQEQYETNKDSPPKERKYKKSSELDNAIKQCL 70
++ E E Y+TN+D P + SSEL +A L
Sbjct: 67 SLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSL 104
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 24.3 bits (51), Expect = 3.7
Identities = 35/154 (22%), Positives = 53/154 (33%), Gaps = 28/154 (18%)
Query: 2 KVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNELQEQYETNKDSPPKERKYKKSSE 61
K N K RLY K+ DKL L ++ Q D+ K K S+
Sbjct: 61 KHNLSHKIRLYHEKKDFDKL--------------LKQILSQ-----DTQKTFLKTKFKSD 101
Query: 62 LDNAIKQCLRARDLPFSAVIAQQARMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWNN 121
L + Q L DL V+ K ++N + AK S ++ +
Sbjct: 102 LAKNLSQILARYDLKADLNTPNSGCEKVDNLFKHYHNIENN---TLEPKDHAKHSLAYEH 158
Query: 122 QGFS------IKESDDECFKTFTLMKMPLLMRMH 149
FS I F+ T ++PL +R +
Sbjct: 159 AYFSKRLKAFIHNDLKNAFEVLTNAQIPLELRRY 192
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 4.8
Identities = 29/134 (21%), Positives = 54/134 (39%), Gaps = 35/134 (26%)
Query: 13 PTKEQQDKLQHCFFVYNQAYNIGLNELQEQYETNKDSPPKERKYKKSSELDNAI-----K 67
P +++ + L+ F + N+LQ++Y+ KE K K+++ +A+ +
Sbjct: 241 PLEKRLETLKSRFLCDKENLKSCANQLQQRYQNALIERDKELKNAKNNKEKHALILANYE 300
Query: 68 QCLRARDLPFSAVIAQQ-ARMNVERAL-------------KDAFKVKN------------ 101
L+ ++ F + +++Q A +N AL K F V +
Sbjct: 301 HTLKTLNIEFLSELSEQMAFLNETMALNAQVLALLAQQQTKKPFNVSDGLSGGKALIKNI 360
Query: 102 ----RGFPKFKNSK 111
GFP FKN K
Sbjct: 361 RLDPHGFPSFKNFK 374
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 23.9 bits (50), Expect = 4.8
Identities = 19/91 (20%), Positives = 39/91 (41%), Gaps = 1/91 (1%)
Query: 11 LYPTKEQQDKLQHCFFVYNQAYNIGLNELQEQYETNKDSPPKERKYKKSSELDNAIKQCL 70
LY Q+D +Q V + +G +++ + + E YK ++E N ++ L
Sbjct: 7 LYNPYYQKDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHDSLEEIYKATNE-KNFLQLFL 65
Query: 71 RARDLPFSAVIAQQARMNVERALKDAFKVKN 101
F+A + + ++ E + +K KN
Sbjct: 66 TDYANLFAAKVIKVSKEIDESLIPSYYKEKN 96
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 23.9 bits (50), Expect = 4.8
Identities = 27/110 (24%), Positives = 44/110 (39%), Gaps = 16/110 (14%)
Query: 57 KKSSELDNAIKQCLRARDLPFSAVIAQQARMNVERA-LKDAFKVKNRG------------ 103
KK S LD +K L+ + S + + A + V A +++ F++ ++
Sbjct: 13 KKESLLDAFVKTYLQTLEPISSKRLKELANLKVSCATIRNYFQILSKEGMLHQAHSSGAR 72
Query: 104 ---FPKFKNSKSAKQSFSWNNQGFSIKESDDECFKTFTLMKMPLLMRMHR 150
F F+N F +S E F FTL+K P L R+ R
Sbjct: 73 LPTFKAFENYWHKSLRFEVLKVNEKRLKSASENFGLFTLLKKPSLERLER 122
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 23.5 bits (49), Expect = 6.2
Identities = 11/29 (37%), Positives = 14/29 (47%)
Query: 199 LDTACSCEINNHDKLTDFKQYQTDMKELL 227
L A +N+ +KL DF D K LL
Sbjct: 33 LPNATLISVNDQEKLADFLSQHKDQKVLL 61
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 23.5 bits (49), Expect = 6.2
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 2/41 (4%)
Query: 37 NELQEQYETNKDSPPKERKYKKSSELDNAIKQCLRARDLPF 77
+E++ KD PK + K ELD +++ RA++L F
Sbjct: 604 DEIKIAKALKKDKMPKSEREKIIKELDKKMRE--RAKNLDF 642
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 23.1 bits (48), Expect = 8.1
Identities = 6/22 (27%), Positives = 19/22 (86%)
Query: 157 KVKQISISCSHRKYFVSFSVEY 178
++++IS++ ++++ F+SF++ Y
Sbjct: 632 RLEEISVNANYQRKFLSFNLSY 653
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,768
Number of Sequences: 1491
Number of extensions: 14262
Number of successful extensions: 43
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 18
length of query: 268
length of database: 494,079
effective HSP length: 76
effective length of query: 192
effective length of database: 380,763
effective search space: 73106496
effective search space used: 73106496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)