BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645042|ref|NP_207212.1| IS200 insertion sequence
from SARA17 [Helicobacter pylori 26695]
(138 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 129 4e-32
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 1.0
ref|NP_223099.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_223095.1| putative [Helicobacter pylori J99] 24 1.3
ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99] 23 2.3
ref|NP_223572.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 8.7
ref|NP_223387.1| putative [Helicobacter pylori J99] 22 8.7
>ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 64
Score = 129 bits (323), Expect = 4e-32
Identities = 60/64 (93%), Positives = 62/64 (96%)
Query: 75 VSVSKLVNSLKGVSSRLTRQHHFKSVEASLWGKHLWSPSYFAGSCGDAPLEMIKQYIQDQ 134
+SVSKLVNSLKGVSSRLTRQHHFKSVEASLWGKHLWSPSYFAGSCG PLEMIKQYIQ+Q
Sbjct: 1 MSVSKLVNSLKGVSSRLTRQHHFKSVEASLWGKHLWSPSYFAGSCGGTPLEMIKQYIQEQ 60
Query: 135 ETPH 138
ETPH
Sbjct: 61 ETPH 64
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 24.6 bits (52), Expect = 1.0
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 10/54 (18%)
Query: 26 KYRRSAF-----NKEVIDFLGS---VFAKVCKDFESELVEFDGESDHVHLLINY 71
K+ RS F + + F GS +F V KDF + +EF+ S L+INY
Sbjct: 379 KWHRSVFFVGDVKQSIYAFRGSFSSLFESVSKDFYHDNLEFNHRS--APLIINY 430
>ref|NP_223099.1| putative [Helicobacter pylori J99]
Length = 370
Score = 24.3 bits (51), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 13 CVFLMHVHFVFVTKYRRSAFNKEVIDFLGS 42
C F+ + FVF + +++ E IDFL S
Sbjct: 68 CSFVSFIAFVFSLSFYGFSYSVEKIDFLPS 97
>ref|NP_223095.1| putative [Helicobacter pylori J99]
Length = 89
Score = 24.3 bits (51), Expect = 1.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 49 KDFESELVEFDGESDHVHL----LINYPPKV--SVSKLVNSLK 85
K FE+++VEFDG+ ++ L N K+ +VSK+ N+ K
Sbjct: 32 KSFENQIVEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
>ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99]
Length = 198
Score = 23.5 bits (49), Expect = 2.3
Identities = 18/73 (24%), Positives = 31/73 (41%), Gaps = 4/73 (5%)
Query: 14 VFLMHVHFVFVTKYRRSAFNKEVIDFLGSVFAKVCKDFESELVEFDGESDHVHL----LI 69
+F F FV AF+K V DF F + +SE V F ++ V +
Sbjct: 38 LFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQV 97
Query: 70 NYPPKVSVSKLVN 82
++P ++K ++
Sbjct: 98 SFPMVADITKSIS 110
>ref|NP_223572.1| putative [Helicobacter pylori J99]
Length = 230
Score = 21.9 bits (45), Expect = 6.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 19 VHFVFVTKYRRSAFNKEVIDFLGSVFAK 46
++F V +Y+ F E++ F G +F+K
Sbjct: 51 MNFQAVVQYKWVFFIAEIVAFFGLMFSK 78
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 21.6 bits (44), Expect = 8.7
Identities = 8/26 (30%), Positives = 15/26 (56%)
Query: 13 CVFLMHVHFVFVTKYRRSAFNKEVID 38
C F +H+VF +K ++ EV++
Sbjct: 486 CGFKEVIHYVFYSKEKQQKLGFEVLE 511
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 21.6 bits (44), Expect = 8.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 23 FVTKYRRSAFNKEVIDFLGSVFAKVCKDFESELVEF 58
F + Y++S KEV L + K+ +D +S + +
Sbjct: 280 FDSDYKKSQQRKEVDKNLHQICEKIVQDVKSRIESY 315
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,341
Number of Sequences: 1491
Number of extensions: 5286
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 138
length of database: 494,079
effective HSP length: 69
effective length of query: 69
effective length of database: 391,200
effective search space: 26992800
effective search space used: 26992800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 44 (21.6 bits)