BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645048|ref|NP_207218.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223681.1| putative [Helicobacter pylori J99] 270 1e-74
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 26 0.38
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 1.4
ref|NP_223829.1| CARBONIC ANHYDRASE [Helicobacter pylori J99] 23 2.4
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 4.2
ref|NP_224009.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 22 5.4
ref|NP_223021.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_224153.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 22 7.1
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 22 7.1
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 22 7.1
ref|NP_224000.1| putative histidine kinase sensor protein [... 22 9.3
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 22 9.3
ref|NP_223176.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_223069.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_223681.1| putative [Helicobacter pylori J99]
Length = 142
Score = 270 bits (690), Expect = 1e-74
Identities = 134/142 (94%), Positives = 140/142 (98%)
Query: 1 MQESVVRVDYDSLETCKNFKPSVGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIA 60
MQESVV VDYDSLETCKNFKPSVGTEL+VLEK+IAH RFKGNE+MVYEENFVHAGFVL+A
Sbjct: 1 MQESVVHVDYDSLETCKNFKPSVGTELVVLEKNIAHVRFKGNENMVYEENFVHAGFVLLA 60
Query: 61 CNYAALCALNKRHSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
CNYAALCALNK++SVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV
Sbjct: 61 CNYAALCALNKKYSVVVSNNINFYAPLELNQEALIKAQVIQDGVKKAEIKIEAFVLDIQV 120
Query: 121 LEGMIEIVVFDKKPFKFNFKEE 142
LEGMIEIVVFDKKPFKFNFKEE
Sbjct: 121 LEGMIEIVVFDKKPFKFNFKEE 142
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 26.2 bits (56), Expect = 0.38
Identities = 23/102 (22%), Positives = 43/102 (41%), Gaps = 12/102 (11%)
Query: 40 KGNESMVYEENFVHAGFVLIACNYAALCALNKRHSVV-VSNNINFYAPLELNQEALIKAQ 98
KG + +V+ + FVHAG A + H ++ +S Y + + + + Q
Sbjct: 2702 KGKQILVHADEFVHAG-------EAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQ 2754
Query: 99 VIQDGVKKAEIKIEAFVLDIQVLEG----MIEIVVFDKKPFK 136
+ K EI + + +++L+ IE + KK FK
Sbjct: 2755 GVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFK 2796
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 24.3 bits (51), Expect = 1.4
Identities = 15/51 (29%), Positives = 23/51 (44%)
Query: 90 NQEALIKAQVIQDGVKKAEIKIEAFVLDIQVLEGMIEIVVFDKKPFKFNFK 140
N+E L I + V K E+K + D Q+L+ +E + K K K
Sbjct: 676 NEEGLFDGLKINESVLKKELKNATDLEDKQILKTALEWLEAKNKALKMKNK 726
>ref|NP_223829.1| CARBONIC ANHYDRASE [Helicobacter pylori J99]
Length = 247
Score = 23.5 bits (49), Expect = 2.4
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 10 YDSLETCKNFKPS--VGTELIVLEKDIAHARFKGNESMVYEENFVHAGFVLIACNYAALC 67
+ E CK+ K + E +D A +FK S F H + ++
Sbjct: 39 HKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHH---TLKASFEPTN 95
Query: 68 ALNKRHSVVVSNNINFYAPLE 88
+N R V +N++F+AP+E
Sbjct: 96 HINYRGHDYVLDNVHFHAPME 116
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 22.7 bits (47), Expect = 4.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 41 GNESMVYEENFVHAGFVLIACN 62
GN+S Y +NF H+ +++ N
Sbjct: 200 GNDSFNYNDNFNHSSWLVFMKN 221
>ref|NP_224009.1| putative [Helicobacter pylori J99]
Length = 129
Score = 22.7 bits (47), Expect = 4.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 79 NNINFYAPLELNQEALIKAQVIQDGVK 105
+ +N+ APL N + + QV+ D K
Sbjct: 87 STVNYLAPLIFNLDKQLMGQVVLDSKK 113
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 22.3 bits (46), Expect = 5.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 104 VKKAEIKIEAFVLDIQVLEGMIEIVVFDKKPFKFNF 139
+K+ ++ E F+ Q L+ E+ ++ KP F F
Sbjct: 440 LKEGQVFSEEFIQAYQSLKFHSEVFPWESKPHPFEF 475
>ref|NP_223021.1| putative [Helicobacter pylori J99]
Length = 251
Score = 22.3 bits (46), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 59 IACNYAALCALNKRHSVVVSNNINFYAPLELN 90
+ C+YA L K++ + VS +A L+ N
Sbjct: 112 VVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNN 143
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 21.9 bits (45), Expect = 7.1
Identities = 10/41 (24%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Query: 103 GVKKAEIKIEAFVLDIQVLEGMIEIVVFDK-----KPFKFN 138
G K K E F+L ++++ +++ D+ + F+FN
Sbjct: 96 GAKDLAYKSETFILRLEMIPKKANLMILDQEKCVIEAFRFN 136
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 21.9 bits (45), Expect = 7.1
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 73 HSVVVSNNINFYAPLELNQEALIK-------AQVIQDGVKKAEIKIEAFVLDIQVLEGMI 125
H+ ++ N + LE A + A ++++ +K ++AF I +L+G
Sbjct: 98 HNGIIENYASLKKELENKGHAFLSQTDTEVIAHLLEETLKSEGDLLKAFEKSISLLKGSY 157
Query: 126 EIVVFDKK 133
I++ K+
Sbjct: 158 AILMLHKR 165
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 7.1
Identities = 16/70 (22%), Positives = 29/70 (40%), Gaps = 12/70 (17%)
Query: 30 LEKDIAHARFKGNESMVYEE------------NFVHAGFVLIACNYAALCALNKRHSVVV 77
L ++ K N+ M+ E+ NF H + + ++ A+ + KRH V
Sbjct: 109 LNPEMVEFLHKNNKKMIIEKASNKELELLKDANFKHPENIRASLDHDAIAHILKRHGVNS 168
Query: 78 SNNINFYAPL 87
N N +P+
Sbjct: 169 VNVKNGESPI 178
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 21.9 bits (45), Expect = 7.1
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 25 TELIVLEKDIAHARFKGNESMVYEENF 51
T ++ + I H FK +++VYE N+
Sbjct: 390 TPMLSAKDRIFHNLFKQVQTLVYERNY 416
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 21.9 bits (45), Expect = 7.1
Identities = 12/43 (27%), Positives = 22/43 (50%)
Query: 45 MVYEENFVHAGFVLIACNYAALCALNKRHSVVVSNNINFYAPL 87
++ + NF H V + ++ A+ + KRH V N N +P+
Sbjct: 783 LLQDANFRHPEDVRASLDHEAITHILKRHGVNSVNVRNGESPI 825
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 21.9 bits (45), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (56%)
Query: 84 YAPLELNQEALIKAQVIQDGV 104
YAP N ALIK VI D +
Sbjct: 460 YAPFYQNARALIKKGVIFDEI 480
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 344
Score = 21.6 bits (44), Expect = 9.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 26 ELIVLEKDIAHARFKGNESMVYEENFVHAG 55
+LI K+ FKG + +E F H G
Sbjct: 55 DLIKTHKEGGFFSFKGEYYLFSDETFAHLG 84
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 21.6 bits (44), Expect = 9.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 35 AHARFKGNESMVYEENFVHAGFVLIACNYAALC 67
AH FK ++ +E H + +A A+C
Sbjct: 80 AHQPFKNYPDLIKKELQEHNAYASVASGVPAMC 112
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.6 bits (44), Expect = 9.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 27 LIVLEKDIAHARFKGNESM 45
+I +E +A A+FK ESM
Sbjct: 70 IIAVENGVATAKFKAFESM 88
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 21.6 bits (44), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 114 FVLDIQVLEGMIEIVVFDKKP 134
F++ VL+G++E+V KP
Sbjct: 59 FLMHYSVLKGLVEVVPVLNKP 79
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,222
Number of Sequences: 1491
Number of extensions: 6467
Number of successful extensions: 27
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 20
length of query: 142
length of database: 494,079
effective HSP length: 69
effective length of query: 73
effective length of database: 391,200
effective search space: 28557600
effective search space used: 28557600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)