BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645055|ref|NP_207225.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224018.1| putative [Helicobacter pylori J99] 89 4e-20
ref|NP_223669.1| putative [Helicobacter pylori J99] 56 2e-10
ref|NP_223889.1| putative [Helicobacter pylori J99] 30 0.016
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 28 0.081
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 26 0.31
ref|NP_223389.1| putative [Helicobacter pylori J99] 25 0.40
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 2.0
ref|NP_223629.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 22 4.4
ref|NP_222886.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_223790.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 21 9.8
ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori ... 21 9.8
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 21 9.8
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 21 9.8
ref|NP_223265.1| putative secretion/efflux abc transporter,... 21 9.8
ref|NP_223138.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 21 9.8
ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 9.8
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 21 9.8
>ref|NP_224018.1| putative [Helicobacter pylori J99]
Length = 178
Score = 88.6 bits (218), Expect = 4e-20
Identities = 57/101 (56%), Positives = 60/101 (58%), Gaps = 11/101 (10%)
Query: 13 IQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFI 72
IQPFNHSTIQP NH IQSFNH II QS N +I QS N +I Q KQRY FI
Sbjct: 4 IQPFNHSTIQPFNHSTIQSFNHSII----QSFNHSIIQSFNHSI----IQPFKQRYLIFI 55
Query: 73 T---FTKIRLKIPYFLLFPLLFLFSFPLSLTHTAIFLKNLI 110
T FTK LKIPYFLLFPLL L LT L L+
Sbjct: 56 TIYLFTKTYLKIPYFLLFPLLLTLLLTLLLTLLLTLLLTLL 96
>ref|NP_223669.1| putative [Helicobacter pylori J99]
Length = 63
Score = 56.2 bits (134), Expect = 2e-10
Identities = 36/67 (53%), Positives = 41/67 (60%), Gaps = 12/67 (17%)
Query: 13 IQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFI 72
IQPFNHSTIQP NH IQ FNH IIQ+ + +I QS NQ+ I+QRY FI
Sbjct: 4 IQPFNHSTIQPFNHSTIQPFNHSIIQSF--IIHHSIIQSFNQS-------TIQQRYLIFI 54
Query: 73 T---FTK 76
T FTK
Sbjct: 55 TIYLFTK 61
Score = 34.7 bits (78), Expect = 7e-04
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 3 SFFQKRGRNGIQPFNHSTIQP--SNHPIIQSFNHPIIQ 38
S Q + IQPFNHS IQ +H IIQSFN IQ
Sbjct: 10 STIQPFNHSTIQPFNHSIIQSFIIHHSIIQSFNQSTIQ 47
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 30.0 bits (66), Expect = 0.016
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 38 QAIKQSSNQAIKQSSNQAIKQSSNQAIKQ 66
Q IKQ Q IKQ Q IKQ Q IKQ
Sbjct: 92 QEIKQEIKQEIKQEIKQEIKQEIKQEIKQ 120
Score = 28.5 bits (62), Expect = 0.047
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 36 IIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQ 66
I Q IKQ Q IKQ Q IKQ Q KQ
Sbjct: 94 IKQEIKQEIKQEIKQEIKQEIKQEIKQETKQ 124
Score = 28.1 bits (61), Expect = 0.062
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 30 QSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQ 62
Q I Q IKQ Q IKQ Q IKQ + Q
Sbjct: 92 QEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQ 124
Score = 26.9 bits (58), Expect = 0.14
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 41 KQSSNQAIKQSSNQAIKQSSNQAIKQ 66
KQ Q IKQ Q IKQ Q IKQ
Sbjct: 91 KQEIKQEIKQEIKQEIKQEIKQEIKQ 116
Score = 26.2 bits (56), Expect = 0.23
Identities = 18/65 (27%), Positives = 27/65 (40%), Gaps = 3/65 (4%)
Query: 6 QKRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIK 65
Q ++ + P + +T I Q I Q IKQ Q IKQ Q KQ + K
Sbjct: 75 QNPTKDTVPPLDTAT---QKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENK 131
Query: 66 QRYHT 70
+ ++
Sbjct: 132 PKQNS 136
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 27.7 bits (60), Expect = 0.081
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 27 PIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTF 71
PI+ F +P + AI NQ+I ++ + +K ++NQ Q Y F
Sbjct: 47 PIVVGFTNPQMTAIMTQYNQSIAEAVSVPMK-AANQQYNQLYQGF 90
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 25.8 bits (55), Expect = 0.31
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 7 KRGRNGIQPFNHSTIQPSNHPIIQSFNHPIIQAIKQSSNQAIK 49
K+ ++P N ST S H +I+ N ++ +KQS ++ IK
Sbjct: 74 KKNHKILKPLNEST---SKHILIKGDNLDALKILKQSYSEKIK 113
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 25.4 bits (54), Expect = 0.40
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 27 PIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKI 77
PI Q++ IQ I S + ++++S+QA A+KQ +FI T I
Sbjct: 248 PIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVKESFIRSTII 298
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.1 bits (48), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (43%)
Query: 24 SNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKI 77
S P+I + N+P Q I + + S N + N +KQ +T I ++
Sbjct: 2642 SEGPLIFNLNNPTHQTIINVTGTSTIMSYNNQALINFNTQLKQGAYTLINANRM 2695
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 22.7 bits (47), Expect = 2.6
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 30 QSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSNQAIKQRY 68
Q+FNHP Q + + + ++ + +K+RY
Sbjct: 442 QNFNHPFSAEENQYMQRLVNNTKTDFFDKALIEELKKRY 480
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 21.9 bits (45), Expect = 4.4
Identities = 11/43 (25%), Positives = 20/43 (45%)
Query: 45 NQAIKQSSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPYFLLF 87
N K+ SN+ ++ +Q +KQ + + I P+ LF
Sbjct: 73 NDETKRYSNELLQAWKHQVLKQSTTGLVVLSIISSTAPFIGLF 115
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 21.9 bits (45), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Query: 3 SFFQKRGRNGIQPFNHSTIQPSNHPIIQSFNH 34
S+++ + I N S N PIIQ+FN+
Sbjct: 102 SYYENNAKGRI---NFSKTIKKNRPIIQTFNN 130
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 21.6 bits (44), Expect = 5.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 28 IIQSFNHPIIQ 38
IIQSFNH I Q
Sbjct: 124 IIQSFNHAIAQ 134
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 841
Score = 20.8 bits (42), Expect = 9.8
Identities = 7/16 (43%), Positives = 14/16 (86%)
Query: 44 SNQAIKQSSNQAIKQS 59
SN+A+ Q +NQ+I+++
Sbjct: 75 SNKALTQQANQSIEEA 90
>ref|NP_224133.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 20.8 bits (42), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 61 NQAIKQRYHTFITFTK 76
N AIK+ Y +TFTK
Sbjct: 55 NCAIKKGYSGVVTFTK 70
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 20.8 bits (42), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 89 LLFLFSFPLSLTHTAIFLKNLI 110
L+F+ FPLSL A+ L +L+
Sbjct: 322 LIFIVFFPLSLFLHAVGLGSLL 343
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 20.8 bits (42), Expect = 9.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 77 IRLKIPYFLLFPLLFLFSF 95
+R+K PYFL +L ++F
Sbjct: 5 LRVKTPYFLASVVLTFWTF 23
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 20.8 bits (42), Expect = 9.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 83 YFLLFPLLFLFSFPLSLTH 101
Y LL P L L+ L LTH
Sbjct: 63 YSLLLPTLLLWGALLFLTH 81
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 20.8 bits (42), Expect = 9.8
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 74 FTKIRLKIPYFL 85
F KI LK P+FL
Sbjct: 386 FNKIHLKAPHFL 397
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 20.8 bits (42), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 1/28 (3%)
Query: 5 FQKRGRNG-IQPFNHSTIQPSNHPIIQS 31
FQ NG FN T Q + HP IQ+
Sbjct: 344 FQNSSFNGGTFTFNDQTNQSTQHPQIQN 371
>ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 277
Score = 20.8 bits (42), Expect = 9.8
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 51 SSNQAIKQSSNQAIKQRYHTFITFTKIRLKIPYFLL 86
++ +A+K + + I YH + +I K+ + +L
Sbjct: 89 NAKKALKNTGSLLISGTYHNLFSLGRILQKLDFKIL 124
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 20.8 bits (42), Expect = 9.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 9 GRNGIQPFNHSTI--QPSNHPIIQSFNHPIIQAIKQSSNQAIKQSSNQAIKQSSN 61
G I+ H+ I Q S+ ++QSF P A NQ + + +A K N
Sbjct: 686 GAREIKKIIHNEIKTQLSDILLLQSFKKPCKIACLLEKNQLVLKEIKRAQKVKEN 740
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,907
Number of Sequences: 1491
Number of extensions: 3983
Number of successful extensions: 46
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 29
length of query: 111
length of database: 494,079
effective HSP length: 66
effective length of query: 45
effective length of database: 395,673
effective search space: 17805285
effective search space used: 17805285
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 42 (20.8 bits)