BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645056|ref|NP_207226.1| phage/colicin/tellurite
resistance cluster terY protein [Helicobacter pylori 26695]
(185 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 26 0.75
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 26 0.75
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223790.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 23 6.4
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter... 23 6.4
ref|NP_223352.1| putative Outer membrane protein [Helicobac... 22 8.3
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 25.8 bits (55), Expect = 0.75
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 153 YTDDVEKLVKLFEIMTQTISKGSASIKKLNWI 184
Y EKL + FE+ TQ +++ + + K W+
Sbjct: 438 YVSSPEKLDEYFELKTQNLNEAAKTELKKKWV 469
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 25.8 bits (55), Expect = 0.75
Identities = 19/69 (27%), Positives = 30/69 (42%)
Query: 53 GDIKNINFKPLSTSGGTPLDQAFRLAKDLIEDKDTFPTKFYKPYSILVSDGEPNNDKWQE 112
GDI F PL T + + +A D KD + + SI ++D PN ++ Q
Sbjct: 144 GDISESFFIPLGTHYFGAVREKDLIAMDRNSAKDLYELRQMHAKSIGIADAFPNLEETQI 203
Query: 113 PLFNFHHDG 121
N+ + G
Sbjct: 204 LFDNYFNAG 212
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 3/29 (10%)
Query: 91 KFYKPY---SILVSDGEPNNDKWQEPLFN 116
+FYK Y ++LV D + +K +E LFN
Sbjct: 1403 EFYKAYPNANVLVVDSKDTTEKERELLFN 1431
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.5 bits (49), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 54 DIKNINFKPLSTSGGTPLDQAFRLAKDLIEDKD 86
D KNI +T GT L +AFR A ++ + D
Sbjct: 350 DNKNIKLLDFATGTGTFLLEAFRKALEVRKTSD 382
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 22.7 bits (47), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 79 KDLIEDKDTFPTKFYKPYSILVSDGEPNNDKWQEPLF 115
+++ E D P Y P S EP N+ +++ LF
Sbjct: 246 RNVAEIVDNLPKNQYTPKKKNFSPNEPFNNPFKDQLF 282
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 51 DFGDIKNINFKPLSTSGGTPL-----DQAFRLAKDLIEDKDTFPTKFYKPYSILVSDGE 104
D+ +K + KP T+GGT ++ + + + K F + ++ I++ DG+
Sbjct: 395 DYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQ 453
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 22.7 bits (47), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (54%), Gaps = 6/29 (20%)
Query: 91 KFYKPYSILVSDGEPNNDKWQEPLFNFHH 119
+F +PY+ L+ D PNN +NF H
Sbjct: 359 EFLQPYAKLLYDAIPNNH------YNFAH 381
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 51 DFGDIKNINFKPLSTSGGTPL-----DQAFRLAKDLIEDKDTFPTKFYKPYSILVSDGE 104
D+ +K + KP T+GGT ++ + + + K F + ++ I++ DG+
Sbjct: 315 DYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQ 373
>ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 351
Score = 22.7 bits (47), Expect = 6.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 16 CIQKMIETLKQEAKKELFSKMAIVTFGG 43
C+ K + +E K F+K +V+ GG
Sbjct: 264 CLTKKSREIFKELAKAFFNKSVLVSVGG 291
>ref|NP_223352.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 336
Score = 22.3 bits (46), Expect = 8.3
Identities = 18/84 (21%), Positives = 37/84 (43%), Gaps = 9/84 (10%)
Query: 61 KPLSTSGGTPLDQAFRLAKDLIEDKDTFPTKFYKPYSILVSDGEPNNDKWQEPLFNFHHD 120
K + + TPL + R + +L+ + D + + Y N + F+F +
Sbjct: 18 KEVIPTPSTPLTPSKRYSINLMTENDGYINPYIDEYYTA-----GNQIGFSTKEFDFSKN 72
Query: 121 GRSAKSVCWSIFIGDRNDNPQVNK 144
K++ WS ++G N +P+V +
Sbjct: 73 ----KAMKWSSYLGFFNKSPRVTR 92
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,867
Number of Sequences: 1491
Number of extensions: 9567
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 185
length of database: 494,079
effective HSP length: 72
effective length of query: 113
effective length of database: 386,727
effective search space: 43700151
effective search space used: 43700151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)