BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645058|ref|NP_207228.1| hypothetical protein
[Helicobacter pylori 26695]
         (55 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222730.1|  60kDa chaperone [Helicobacter pylori J99]        25  0.32
ref|NP_223301.1|  POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico...    24  0.70
ref|NP_224012.1|  PREPHENATE DEHYDROGENASE [Helicobacter pyl...    22  2.0
ref|NP_222964.1|  EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico...    22  2.7

>ref|NP_222730.1| 60kDa chaperone [Helicobacter pylori J99]
          Length = 546

 Score = 25.0 bits (53), Expect = 0.32
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 12  IQVKSSVAFGADANMIKLKKISSKVFDSAEIFQV 45
           I+VK  +   A+A + +LKK S KV    EI QV
Sbjct: 113 IEVKRGMDKAAEAIINELKKASKKVGGKEEITQV 146



>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
          Length = 402

 Score = 23.9 bits (50), Expect = 0.70
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 27  IKLKKISSKVFDSAEIFQVLHFMKKSG 53
           +K+K +  ++FDS E F+  H   K G
Sbjct: 318 LKIKGLLKEIFDSNEPFKKEHLALKGG 344



>ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pylori J99]
          Length = 275

 Score = 22.3 bits (46), Expect = 2.0
 Identities = 7/22 (31%), Positives = 14/22 (62%)

Query: 9   TEEIQVKSSVAFGADANMIKLK 30
           TE++++   +  G  A +IK+K
Sbjct: 146 TEQVEIAKEIFLGIKARLIKMK 167



>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
          Length = 420

 Score = 21.9 bits (45), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 3/48 (6%)

Query: 7   HFTEEIQVKSSVAFGADANMIKLKKISSKVFDSAEIFQVLHFMKKSGC 54
           +F + + V +S    A A+M   KKI+SK +   E+  +   M+  GC
Sbjct: 132 NFPKRVAVITSQNSAAWADM---KKIASKRWPMCELVCINTLMQGEGC 176



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.321    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,665
Number of Sequences: 1491
Number of extensions: 1130
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 55
length of database: 494,079
effective HSP length: 31
effective length of query: 24
effective length of database: 447,858
effective search space: 10748592
effective search space used: 10748592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)