BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645059|ref|NP_207229.1| protein phosphatase 2C
homolog (ptc1) [Helicobacter pylori 26695]
(228 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222783.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223297.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHO... 26 1.0
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 25 1.3
ref|NP_223873.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 24 3.8
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 24 3.8
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 24 3.8
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 23 6.5
ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPH... 23 6.5
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 23 6.5
ref|NP_223180.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 23 8.5
ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99] 23 8.5
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 23 8.5
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 27.7 bits (60), Expect = 0.26
Identities = 26/120 (21%), Positives = 54/120 (44%), Gaps = 10/120 (8%)
Query: 97 NALSTLQLVFIGKEKAFIGKVGDGLLAVLGKEHRLLREDKQDLVHFTTPFDRNTLLTWEV 156
+ALS L ++ K F K +G+L+ + E + +DL + F T ++E
Sbjct: 209 DALSKDALYYLEKIMRFGSK--NGVLSFVNLESEKNNQSAEDLKRYAEFFKDRT--SFEC 264
Query: 157 LERKKIDALFLCTDGLDESLIDARRLDFVKDIISEFKHKKKASKKCYVLLKNHKFYDDTS 216
L+ ++ + D+ + DF I + +K KK+ ++ L ++ +F+ +S
Sbjct: 265 LKYLNVEIIS------DQGIKSQHMQDFADKIKAYYKQKKEVKRELKDLQRDKEFWTKSS 318
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 26.2 bits (56), Expect = 0.77
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 184 FVKDIISEFKHKKKASKKCYVLLKNH 209
F D+ + K+ KK+ KK Y L KNH
Sbjct: 19 FAADLETGTKNDKKSGKKFYKLHKNH 44
>ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE [Helicobacter
pylori J99]
Length = 163
Score = 25.8 bits (55), Expect = 1.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 180 RRLDFVKDII----SEFKHKKKASKKCYVLLKNH 209
+RLDF ++ S K+ K K C++ KNH
Sbjct: 17 KRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNH 50
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 25.4 bits (54), Expect = 1.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 157 LERKKIDALFLCTDGLDESLIDARRLDFVKDIISEFKHKK 196
+E KK A D LD L + + F KD S+F K
Sbjct: 68 IETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDESK 107
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 24.3 bits (51), Expect = 2.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 25 DAFLIRKNQKGLLLVLCDGL 44
D FL K+ G+ L+LC GL
Sbjct: 265 DTFLDLKSSLGVALILCSGL 284
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 23.9 bits (50), Expect = 3.8
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 32 NQKGLLLVLCDGLGSKKDSQIGAKKLCESVEKALNA 67
N KGLLL+ +G IGA + +V A+ +
Sbjct: 44 NSKGLLLIFAAVIGGYMAMNIGANDVSNNVGPAVGS 79
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 23.9 bits (50), Expect = 3.8
Identities = 19/71 (26%), Positives = 28/71 (38%), Gaps = 2/71 (2%)
Query: 140 VHFTTPFDRNTLLTWEVLERKKIDALFLCTDGLDESLIDARRLDFVKDIISEFKHKKKAS 199
V F P D N +T + R+ + + C D + +I L K + E K K
Sbjct: 28 VDFNVPLDENLNITDDTRIRESLPTIQFCIDNKAKDIILVSHLGRPKGV--EEKLSLKPF 85
Query: 200 KKCYVLLKNHK 210
K L NH+
Sbjct: 86 LKRLERLLNHE 96
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.9 bits (50), Expect = 3.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 185 VKDIISEFKHKKKASKKCYVLLKNHKFYDDTSL 217
VKD++ E +K K+ +L N FY + +L
Sbjct: 579 VKDLMKETMEEKTNIKQIIILTHNTYFYKEITL 611
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 23.9 bits (50), Expect = 3.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 29 IRKNQKGLLLVLCDGLGSKKDSQIGAKKLCESVEKALNAIDIQGCNLALLNKVIFS 84
+ ++K LL L L +K +Q E++ NAI IQ C L+ NK + S
Sbjct: 430 LNSDKKALLRNLEKSLKNKIFAQT------EAINLVSNAIKIQHCGLSAKNKPVGS 479
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 23.1 bits (48), Expect = 6.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 98 ALSTLQLVFIGKEKAFIGKVGDG-----LLAVLGKEHRLLR 133
A+ + LVF G G + G +LA++ EHR+LR
Sbjct: 177 AVLAVLLVFSGGSVHLFGLIVSGAFAISVLAIVTSEHRILR 217
>ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
[Helicobacter pylori J99]
Length = 491
Score = 23.1 bits (48), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 37 LLVLCDGLGSKKDSQIGA 54
LL++ DG+G +KDS A
Sbjct: 6 LLIITDGIGYRKDSDHNA 23
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 23.1 bits (48), Expect = 6.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 169 TDGLDESLIDARRLDFVKDIISEFKHK 195
T+GL S +D + + +DI+++FK+K
Sbjct: 257 TNGLVNSKVDQKYVLNKQDIVNKFKNK 283
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.1 bits (48), Expect = 6.5
Identities = 13/41 (31%), Positives = 22/41 (52%)
Query: 176 LIDARRLDFVKDIISEFKHKKKASKKCYVLLKNHKFYDDTS 216
+++A L+ K + + K+K K+ Y L K K YD +S
Sbjct: 547 ILEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSS 587
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 22.7 bits (47), Expect = 8.5
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 54 AKKLCESVEKALNA--IDIQGCNLALLNKVIFSIWECLLYPLEVRNALSTLQLVFIGKEK 111
AK L E +++ NA + I C +K F + E L ++ + + ++ + E+
Sbjct: 288 AKALKEEIKRIFNAPIVLIYNC---YQDKDAFLVLEIL------KSVVKKVLILELHNER 338
Query: 112 AFIGKVGDGLLAVLGKEHRLLREDKQD 138
+ G+L LG EH L E K++
Sbjct: 339 IIQLEKLKGILETLGLEHALFEELKEN 365
>ref|NP_223379.1| L-asparaginase II [Helicobacter pylori J99]
Length = 332
Score = 22.7 bits (47), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 44 LGSKKDSQIGAKKLCESVEKALNAIDIQG 72
LGS K ++G K+L +++ IQG
Sbjct: 26 LGSYKSGELGVKELLKAIPSLNKIARIQG 54
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 22.7 bits (47), Expect = 8.5
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 46 SKKDSQIGAKKLCESVEKALNAIDIQ 71
++K IGA++L ++EK L I +
Sbjct: 384 NQKSEDIGARRLHTTIEKVLEDISFE 409
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.142 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,111
Number of Sequences: 1491
Number of extensions: 10151
Number of successful extensions: 48
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 16
length of query: 228
length of database: 494,079
effective HSP length: 75
effective length of query: 153
effective length of database: 382,254
effective search space: 58484862
effective search space used: 58484862
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)