BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645060|ref|NP_207230.1| protein kinase C-like
protein [Helicobacter pylori 26695]
(296 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 28 0.22
ref|NP_223035.1| putative [Helicobacter pylori J99] 28 0.29
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 28 0.29
ref|NP_224109.1| putative [Helicobacter pylori J99] 28 0.38
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 27 0.64
ref|NP_223965.1| putative [Helicobacter pylori J99] 26 1.1
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 26 1.1
ref|NP_223995.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 25 2.4
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 25 3.2
ref|NP_223038.1| putative [Helicobacter pylori J99] 24 4.2
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 23 7.1
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 7.1
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 7.1
ref|NP_223856.1| putative role in outermembrane permeabilit... 23 9.3
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 23 9.3
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 23 9.3
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 28.5 bits (62), Expect = 0.22
Identities = 31/107 (28%), Positives = 51/107 (46%), Gaps = 14/107 (13%)
Query: 34 KDVAIKVVLRDGDF-IKDKESLKQYEKSV--LNLSFKPIESHFPMSIPLVTLKEKQGYVM 90
K++ + VV + F +K KE+LK+ KSV L++S PI M++ + + +
Sbjct: 603 KNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQI---KGISSLK 659
Query: 91 KMAEGYEPLKTFLK-------KPSILENEEKDG-IFRINNAIQELCK 129
+P +TFLK K I ++G IF I+N I + K
Sbjct: 660 TPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISK 706
>ref|NP_223035.1| putative [Helicobacter pylori J99]
Length = 266
Score = 28.1 bits (61), Expect = 0.29
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 25/99 (25%)
Query: 54 LKQYEKSVLNLSFKPIESHF------------PMSIPLVTLKEKQGYVMKMAEGYE-PLK 100
L +YEK F PI+ F + IP LK ++A+ Y+ PL
Sbjct: 122 LSEYEKD-----FMPIKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLF 176
Query: 101 TFLKKPS-------ILENEEKDGIFRINNAIQELCKDNH 132
++ + +LE + GIF I N I L KD H
Sbjct: 177 VLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYH 215
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 28.1 bits (61), Expect = 0.29
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 2 ELEEIVDSERNIHKTIEVLGKGGQGIVYRCLDKDVAIKVVLR-----DGDFI---KDKES 53
E+E + +N HK E GK + +Y + + +LR G++I + KE+
Sbjct: 364 EIERLSKDNKNYHKFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKGEWISLKEYKEN 423
Query: 54 LKQYEKSVLNLSFKPIESHFPMSIPLVTLKEKQGY------------VMKMAEGYEPLKT 101
LK+ +KS+ L + ++ + PL+ ++GY VM Y+ KT
Sbjct: 424 LKENQKSIYYLLGENLD--LLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYD--KT 479
Query: 102 FLKKPSILENEEKDGIFRINNAIQELCKD 130
+ S E+ ++ G+ I++ +++ KD
Sbjct: 480 PFRDASHSESLKELGLAEIHDEVKDQFKD 508
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 27.7 bits (60), Expect = 0.38
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 129 KDNHYMTLSLSYYSQTQGLRSRLKILTHLAKLLFRLQSKGLVYGDLNLNNVFYKDNSAFL 188
K N Y L +S+ Q L I + L + VY + N+ YKDNS +
Sbjct: 78 KSNQYTALLSIGFSKCQILSPIFLISLFFTAVYVGLNATPFVYMEEKTQNLIYKDNSLSV 137
Query: 189 IDADNVRYESE 199
+ V+Y +
Sbjct: 138 SEHLLVKYNDD 148
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 26.9 bits (58), Expect = 0.64
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 7/60 (11%)
Query: 45 GDFIKDKESLKQYEKSVLNLSFKPIESHFPMSIPLVTLKEKQGYVMKMAEGYEPLKTFLK 104
GD+ K++ L +E NL FKP + + +++ EK +K+ E + P+ K
Sbjct: 95 GDYFKEEAILFAWEFVTKNLGFKPKDLY-------ISVHEKDDEAVKLWEKFVPVDRIKK 147
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 26.2 bits (56), Expect = 1.1
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 84 EKQGYVMKMAEGYEPLKTFLKKPSILENEEKDGIFRINNAIQEL----CKDNHYMTLSLS 139
EKQ ++++ + + L L I + + I +N AI+ L + NH + L
Sbjct: 121 EKQKKILELKKTKQQLVINLMINGIENYKNQQEIELLNTAIKNLENTLYQANHSSSPDLI 180
Query: 140 YYSQTQGLRSRLKILTHLAKLLFRLQSKGLVYGDLNLNNVFYKDNSAFLIDADNVRYESE 199
++ + L+S L+I + L L S G+L +K+N I N + +E
Sbjct: 181 AIAKLEILKSLLEIEKN--DLEVALSSSHYSMGELT-----FKENEILSIAPKNFEFNNE 233
Query: 200 KALCVIFTPNY 210
+ L I NY
Sbjct: 234 QELHNISATNY 244
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 26.2 bits (56), Expect = 1.1
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 2 ELEEIVDSERNIHKTIEVLGKGGQGIVYRCLDKDVAIKVVLRDGDFIKDKESLKQYEKSV 61
++++++++ N IE++ + +RCLD +++ D K +E +EK +
Sbjct: 33 KMQKLLNNPENKVMLIELMDRS-----FRCLDNKARFEMIEHVLDKYKSREIFSSFEKWL 87
Query: 62 LNLSFKPIESHFP-MSIPLVTLK 83
L + F P MS+P K
Sbjct: 88 L-MGFLSFGKMLPDMSVPFFVNK 109
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 25.4 bits (54), Expect = 1.9
Identities = 13/47 (27%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 97 EPLKTFLKKPSILENEEKDGIFRINNAIQELCKDNHYMTLSLSYYSQ 143
E L++ L K ++LE E+KD I + + + +C + +YY +
Sbjct: 92 EKLESLLLKENLLELEQKDRIIALGHGL--VCLKKQSLIAPQTYYGR 136
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 25.0 bits (53), Expect = 2.4
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Query: 32 LDKDVAIKVVL-RDGDFIKDKESLKQYEKSVLNLSFKPIESH 72
L+K+ ++V+L + G IK+ +L+ + + LS PI+ H
Sbjct: 409 LEKEGVLRVLLNKRGKLIKEYRTLEPLKSLEIRLSEAPIDKH 450
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 24.6 bits (52), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 6/39 (15%)
Query: 82 LKEKQGYVMKMAEGY------EPLKTFLKKPSILENEEK 114
L +K YV K ++ Y E KTF+ +P + EEK
Sbjct: 295 LAKKYEYVDKKSKEYANEVVGEVTKTFIDRPDFITGEEK 333
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 24.3 bits (51), Expect = 4.2
Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Query: 34 KDVAIKVVLRDGDFIKDKESLKQYEKSVLNLSFKPIESHFPMSIPLVTLKEKQ 86
++ A+K+V + IK+ L + + L + F+ E I LKEKQ
Sbjct: 42 REQAVKIV--EKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQ 92
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 23.5 bits (49), Expect = 7.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 32 LDKDVAIKVVLRDGDFIKDKESLKQYEKSVLNLSFKPIESHFPMSIPLVTLKEKQGYVMK 91
+D+++++ + R DF KD L QY + FK ++ IP +T+ K
Sbjct: 174 IDENLSLSLFDRIKDFSKDCLDLAQYYAQLKASDFKDRINY--SHIPFITIDPKDAKDFD 231
Query: 92 MAEGYEPLKTFL 103
A Y+ K L
Sbjct: 232 DAIFYDKEKNTL 243
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 23.5 bits (49), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 118 FRINNAIQELCKDNHYMTLSLSYYSQTQGLRSRLKILTHLAK 159
F+I NA + L K + + LSY +GL S +I L K
Sbjct: 254 FQILNAFENLIKKARFKYIFLSY--NNEGLMSETEIKNILKK 293
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.5 bits (49), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 152 KILTHLAKLLFRLQSKGLVYGDLNLNNVFYKD 183
K L H++K+LF + K L Y + + F KD
Sbjct: 200 KELEHVSKVLFVVDRKDLDYQTMKEYDKFQKD 231
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 23.1 bits (48), Expect = 9.3
Identities = 15/61 (24%), Positives = 30/61 (48%), Gaps = 8/61 (13%)
Query: 141 YSQTQGLRSRLKILTHLAKLLFRLQSKGLVYG-----DLNLNNVFYKDNSAFLIDADNVR 195
Y + + + R+ TH+++ + LQ++ YG LNLN + +N+ N++
Sbjct: 333 YVRFEKVNKRITDATHMSRANYYLQTENNYYGLNIKYFLNLNKI---NNNRTFQSVPNLQ 389
Query: 196 Y 196
Y
Sbjct: 390 Y 390
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 23.1 bits (48), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 164 LQSKGLVYGDLNLNNVFYKDNSAFLIDADNVRYESEKA 201
+ +K L ++LN+ +N A L +DNV E K+
Sbjct: 126 INNKSLGVEPVDLNDFIANENDAILKASDNVMAEFAKS 163
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 23.1 bits (48), Expect = 9.3
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 3 LEEIVDSERNIHKTIEVLGK---------GGQGIVYRCLDKDVAIKVVLRDGDFIKDKES 53
L+ ++ E I + IE+LG+ G G+ + + +A+K+ ++ E
Sbjct: 176 LDPVIGREEEILRVIEILGRRKKNNPLLIGEAGVGKTSIAEALALKIAQKE-----VPEF 230
Query: 54 LKQYEKSVLNLS 65
L++YE L+L+
Sbjct: 231 LQEYEVYSLDLA 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,298
Number of Sequences: 1491
Number of extensions: 15749
Number of successful extensions: 55
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 17
length of query: 296
length of database: 494,079
effective HSP length: 77
effective length of query: 219
effective length of database: 379,272
effective search space: 83060568
effective search space used: 83060568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)