BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645061|ref|NP_207231.1| hypothetical protein
[Helicobacter pylori 26695]
(147 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 23 3.3
ref|NP_223268.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_222780.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223521.1| Hydrogenase expression/formation protein [... 22 5.7
ref|NP_222831.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222813.1| putative [Helicobacter pylori J99] 22 9.7
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.1 bits (48), Expect = 3.3
Identities = 10/41 (24%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Query: 33 RDYNRECEICPYCDAKKPVRLVATSYYQKSEVFYFVSNFTD 73
R+Y ++ ICP+C + T ++K YF +++ +
Sbjct: 274 REYVKDNSICPFCQKE-----TITEEFKKQLESYFDTSYQE 309
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 23.1 bits (48), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 109 QQEKILINNKRLDHYRI-----EIDLEKELTISYN 138
++ K+LI N + D Y+I E + ELT S N
Sbjct: 87 EESKVLIENAKNDGYKIGFKEGEEKMRNELTHSVN 121
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 22.7 bits (47), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 76 FLPTTLFKGIEVVKSEWEF 94
FL +L KG+ + K +W F
Sbjct: 6 FLILSLLKGVLLAKKDWNF 24
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.7 bits (47), Expect = 4.4
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 90 SEW-----EFAEIANNILIFHHDIQQEKILINNKRLDHYRIEIDLEKELT 134
+EW E ++ F +Q+EK K LD Y ++I +E+ T
Sbjct: 2 AEWKTDTEEVKKVVGRCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKT 51
>ref|NP_223521.1| Hydrogenase expression/formation protein [Helicobacter pylori
J99]
Length = 117
Score = 22.3 bits (46), Expect = 5.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 8 LFIESLEKASLQVLECENCSMTYYDRDYNRECEICPY 44
LF+ + E + L C++ + D EC+ C +
Sbjct: 43 LFVSAFETFREESLVCKDAILDIVDEKVELECKDCSH 79
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.9 bits (45), Expect = 7.4
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 109 QQEKILINNKRLDHYRIEIDLEKELTISYNGFLIKVQK 146
+++K ++ + IE++ +K+ TI+ LIK QK
Sbjct: 188 ERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQK 225
>ref|NP_222813.1| putative [Helicobacter pylori J99]
Length = 368
Score = 21.6 bits (44), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 10/46 (21%)
Query: 111 EKILINNKRLDHYRIEIDL-------EKEL-TISYNG--FLIKVQK 146
E ++ N +H++ E+DL E EL +Y G F +K+QK
Sbjct: 139 EFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFALKIQK 184
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,813
Number of Sequences: 1491
Number of extensions: 6469
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 147
length of database: 494,079
effective HSP length: 70
effective length of query: 77
effective length of database: 389,709
effective search space: 30007593
effective search space used: 30007593
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 44 (21.6 bits)