BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645062|ref|NP_207232.1| hypothetical protein
[Helicobacter pylori 26695]
(389 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 32 0.028
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 31 0.048
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.081
ref|NP_223787.1| putative [Helicobacter pylori J99] 30 0.11
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 29 0.24
ref|NP_223090.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223025.1| putative [Helicobacter pylori J99] 29 0.24
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 28 0.40
ref|NP_223172.1| putative [Helicobacter pylori J99] 28 0.53
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 27 1.2
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 27 1.2
ref|NP_223346.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 26 1.5
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 26 2.0
ref|NP_223631.1| GTPase in circumferential ring formation [... 25 2.6
ref|NP_223415.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 3.4
ref|NP_224137.1| putative [Helicobacter pylori J99] 24 5.8
ref|NP_223869.1| putative [Helicobacter pylori J99] 24 5.8
ref|NP_222981.1| putative [Helicobacter pylori J99] 24 5.8
ref|NP_222977.1| putative [Helicobacter pylori J99] 24 5.8
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 24 7.6
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 24 7.6
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 24 7.6
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 24 7.6
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 24 7.6
ref|NP_223327.1| putative [Helicobacter pylori J99] 24 7.6
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 24 7.6
ref|NP_222890.1| putative [Helicobacter pylori J99] 24 7.6
ref|NP_224153.1| putative [Helicobacter pylori J99] 23 9.9
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 23 9.9
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 23 9.9
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 23 9.9
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 23 9.9
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 9.9
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 23 9.9
ref|NP_223659.1| putative [Helicobacter pylori J99] 23 9.9
ref|NP_223389.1| putative [Helicobacter pylori J99] 23 9.9
ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99] 23 9.9
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 23 9.9
ref|NP_222831.1| putative [Helicobacter pylori J99] 23 9.9
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 32.0 bits (71), Expect = 0.028
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 201 ELVPGLCLFFQGSLEF-NDKT---TKTMRTSLLDQIQQDDK-SYLKIWEKYLIKSAQKSF 255
+++ GL L +QG ++ N K TK L D D K + LK Y K F
Sbjct: 46 KILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFY--KDFFSDF 103
Query: 256 NEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKS-QFKKGSDLGVLED----LD 310
+E+K + +L+ SV L+ FK AL K E L+ + + L + ++ +D
Sbjct: 104 DESKALNLLKRFSVP-----LKREFK-ALSKGMREKLQLILTLSRNASLYLFDEPVAGID 157
Query: 311 PQNEENLINLISEQKKQISKNNSQSIMIEDISGDDFIIDYDLSIKEGDAFHLNYMGDLNT 370
P E + LI+ K+ S+N S + + + +D + +KE GD+
Sbjct: 158 PIAREEIFELIA---KEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAF---GDVGE 211
Query: 371 LKKQYSALDKTKK 383
LKK YS+L+ K
Sbjct: 212 LKKGYSSLEAAYK 224
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 31.2 bits (69), Expect = 0.048
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 243 WEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKGSD 302
WEK L+K ++S EA +GV + + +G +++ F P + + +++ K G
Sbjct: 70 WEKNLLKEIERSIQEA-NIGV----NPNNDGETIKL-FFPPMTTEQRKLIAKDAKAMGEK 123
Query: 303 LGVLEDLDPQNEENLINLISEQKKQISKNNSQSI--MIEDISGDDFIIDYDLSIK 355
V Q+ N + + E+ K+IS++ S+ I+ I+ D+ I D S+K
Sbjct: 124 AKVAVRNTRQDANNKVKKL-EKDKEISEDESKKAQEQIQKIT-DEAIKKIDESVK 176
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 30.4 bits (67), Expect = 0.081
Identities = 39/146 (26%), Positives = 63/146 (42%), Gaps = 35/146 (23%)
Query: 2 LSFIKEDSIIKAYNLNTAK--LEPKDREK-LGLLKIEKNKIYFHLDEKRYLKLEIIGKTK 58
L + KE ++K NLN K + DREK + LLK L ++G K
Sbjct: 299 LGYGKESVLLKKNNLNAFKELKDLNDREKEIALLKA----------------LLLLGMQK 342
Query: 59 EKEIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNINF---KDTIIKK 115
+++ F + + ++N E E+ FFK +++ +F KD ++++
Sbjct: 343 RYKVEGYF-HDPLMLVFTHSVNMENSDAEI---FFKTLARVIENDDESDFSKAKDDLLEE 398
Query: 116 LL---------KDMGKDKKIEDFKET 132
L KD KD KIE FKE+
Sbjct: 399 LKNPEFLFSDGKDKEKDYKIEVFKES 424
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 30.0 bits (66), Expect = 0.11
Identities = 82/414 (19%), Positives = 166/414 (39%), Gaps = 67/414 (16%)
Query: 11 IKAYNLNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAFCSNA 70
I+ YN + + ++ + G+ + K K +L EK K E I K EK+IKN
Sbjct: 89 IEVYNKQFKEEQLRNSQVKGIFTLGK-KTNENL-EKIESKKESINKENEKKIKNE----- 141
Query: 71 FLAAQVLNLNQERQVLELKCHFFKHPIKILPEPL-----NINFKDTIIKKLLKDMGKDKK 125
+ QVL +E++ + +K+ K E K+ K+LK+ DK
Sbjct: 142 -ASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKH 200
Query: 126 -------IEDFKETCILKIAGFTYFVCVLPYEYENKEDKEN-----------SEEILKED 167
+E KE + + + +L + + + EN + +
Sbjct: 201 NQSEIVGLEKLKEKIEIVFSKNQTELALLECDLTDFDSIENHSIWEQKIVGSGDVAIANL 260
Query: 168 FRLLNTKGGLSVKRALINNRHSYEAIKLRPIKQELVPGLCLFFQGSLEFNDKTTKTMRTS 227
+ L+ + ++ R + + + I +E L +F S + + T K M+
Sbjct: 261 IKTLSNEDWVAQGREYVKDNSICPFCQKETITEEFKKQLESYFDTSYQESTDTIKKMKE- 319
Query: 228 LLDQIQQDDKSYLKIWEKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNLRIRFKPALGKN 287
D + D++ ++ E +IK+ Q + ++ K L+ E++ + LR + K N
Sbjct: 320 --DYTNKTDEALERLDE--IIKTEQNN-SQTK----LDTENLKRIIETLRSKIK----AN 366
Query: 288 KMEILKKSQ-----FKKGS---DLGVLEDLDPQNEENLINLIS-----EQKKQISKNNSQ 334
+ +++ KS+ FK S ++ ++DL + E + N E++K+ K +
Sbjct: 367 QQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTW 426
Query: 335 SIMIEDISGDDFIIDYDLSIKEGDAFHLNYMGDLNTLKKQYSALDKTKKGLKRQ 388
+I + D I+E + + +N L+K+ S + K L+ +
Sbjct: 427 KFLINEFKSD---------IQEYNKKYCGLEKGINNLEKEISENQEKVKKLENE 471
Score = 25.0 bits (53), Expect = 3.4
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 94 KHPIKILPEPL-----NINFKDTIIKKLLKDMGKDKKIEDFKETCILKIAGFTYFVCVLP 148
K+ + ++ +P+ NI F ++ L+KD+ K+ E I+ + TYF +
Sbjct: 554 KNKVLVIDDPISSLDSNILF---MVSVLVKDLMKETMEEKTNIKQIIILTHNTYFYKEIT 610
Query: 149 YEYENKE-DKENSEEILKEDFRLLNTKG 175
EY+ K + S I+K+D + KG
Sbjct: 611 LEYDLKRYQGKYSFWIIKKDNNVSKIKG 638
Score = 23.9 bits (50), Expect = 7.6
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 256 NEAKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKGSDLGVLEDLDPQNEE 315
NE+ ++ V + ++ N +++ LGK E L+K + KK E ++ +NE+
Sbjct: 84 NESLKIEVYNKQFKEEQLRNSQVKGIFTLGKKTNENLEKIESKK-------ESINKENEK 136
Query: 316 NLIN-----LISEQKKQISKNNSQS 335
+ N +++++K++ K+ + S
Sbjct: 137 KIKNEASLQVLTQKKEKEEKDFTDS 161
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 28.9 bits (63), Expect = 0.24
Identities = 21/79 (26%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Query: 258 AKEVGVLEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKGSDLGVLEDLDPQNEENL 317
AKE+ + + EG ++ F L + K+E S + + LG + L N E L
Sbjct: 47 AKELLIHRVSPGVDEGAKVKAEFLAQLSQKKLECPHISALEATTLLGTM--LGGYNVEPL 104
Query: 318 INLISEQKKQISKNNSQSI 336
I + Q K I+K +++++
Sbjct: 105 IVGLESQDKNIAKESAKAL 123
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 28.9 bits (63), Expect = 0.24
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 20 KLEPKDREKLGLLKIEKNKIYFHLDEKRYLKL-----EIIGKTKEKEIKNAFCSNAFLAA 74
+ E K K L+ EK + LD+ + L++ EI+G + K + F ++ + A
Sbjct: 69 RYEIKVTTKDNLILYEKESLV--LDKPKSLEVPLIRPEIMG-LEGKCLDYEFQASDWSYA 125
Query: 75 QVLNLNQERQVLELKCHFFKHPIKILPEPLNINFKDTII-------KKLLKDMGKDKKIE 127
N N+ E+ K I IL +I + + I K L + + KK +
Sbjct: 126 NFFNGNKASFKQEVCIDTIKPSIVILSRSPSIAYGGSAIVIFEALDKNLSQAFVRVKK-K 184
Query: 128 DFKETCILKIAGFTYFVCVLPYEYENKEDK 157
DFK +L+ F+ ++P+ YENK+ K
Sbjct: 185 DFKAFRLLEFKQRNVFIALVPWSYENKDFK 214
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 28.9 bits (63), Expect = 0.24
Identities = 17/72 (23%), Positives = 39/72 (53%), Gaps = 3/72 (4%)
Query: 266 IESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKGSDLGVLEDL---DPQNEENLINLIS 322
++ + K+ G+ +P+ + + + ++ + + +LG LE L +P NEE L+ ++
Sbjct: 107 LKVLQKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLN 166
Query: 323 EQKKQISKNNSQ 334
EQ+ + K +Q
Sbjct: 167 EQEGETPKEEAQ 178
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 28.1 bits (61), Expect = 0.40
Identities = 20/46 (43%), Positives = 23/46 (49%), Gaps = 6/46 (13%)
Query: 86 LELKCHFFKHPIKILPEPLNINFKDTIIKKLLKDMGKDKKIEDFKE 131
LE FKH IK E + KD KK++K KD KIE KE
Sbjct: 17 LEEAASLFKHHIKFYTEIIE---KD---KKVIKTFNKDFKIEHAKE 56
>ref|NP_223172.1| putative [Helicobacter pylori J99]
Length = 343
Score = 27.7 bits (60), Expect = 0.53
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 308 DLDPQNEENLINLISEQKKQ---ISK------------NNSQSIMIEDISGDDFIIDYDL 352
D+DP+ + +IN ++ K++ IS+ N+ S + +DI DFI + D
Sbjct: 66 DIDPKCDALIINALANPKRENYGISQDEPLIIVGNPPYNDRTSFIKQDIKNKDFIFEIDN 125
Query: 353 SIKEGD 358
+K D
Sbjct: 126 DLKSRD 131
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 26.6 bits (57), Expect = 1.2
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 118 KDMGKDKKIEDFKETCILKIAGFTYFVCVLPYEYENKEDKENSEEILKEDFRLLNTKGG- 176
KD+ K + EDFKE C+ T F + +++ +D E+ + KE RL KG
Sbjct: 352 KDIVKTYENEDFKERCL------TLFNALKSMDFQAYKDFESFK---KEAMRLSQLKGKD 402
Query: 177 --LSVKRALINNRHSYEAIKLRPIKQ 200
++ L N H E + P Q
Sbjct: 403 FFKPLRILLTGNSHGVELPLIFPYIQ 428
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (60%), Gaps = 4/36 (11%)
Query: 78 NLNQERQVLELKCHFFKHPIKILPEPLNINFKDTII 113
+ Q++ +LE F HPI P+PLN+ F+ +++
Sbjct: 298 SFTQKKMILEN----FSHPILKEPKPLNLKFEKSML 329
Score = 24.3 bits (51), Expect = 5.8
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 12 KAYNLNTAKLEPKDREKLGLLKIEKNKIYFH-----LDEKRYLKLEIIGKTKEKEIKNAF 66
K +L A E +D + LL++EK K FH L++ L I+ + ++
Sbjct: 533 KNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLELEKSYQQALNILKSEVASKDTSSM 592
Query: 67 CSNAFLAAQVLNLNQERQ 84
A+++LN ++ Q
Sbjct: 593 HKEIHKASEILNKHKTDQ 610
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 26.2 bits (56), Expect = 1.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 150 EYENKEDKENSEEILKEDFRLLNTK 174
++ENKED + +E+L++ F+ N K
Sbjct: 83 KHENKEDFASEKELLEDFFKYFNEK 107
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.2 bits (56), Expect = 1.5
Identities = 77/384 (20%), Positives = 144/384 (37%), Gaps = 63/384 (16%)
Query: 11 IKAYN--LNTAKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAFCS 68
++AYN + AK E + + L L+K E K +K + L+ + K E + C
Sbjct: 357 LEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKE-CL 415
Query: 69 NAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNIN------FKDTI--IKKLLKDM 120
++ ++ L+ + +K IK N K+ I +K+ D
Sbjct: 416 KLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDC 475
Query: 121 GKDKKIEDFKETCILKI------------AGFTYFVCVLPYEYENKEDKENSEEILKEDF 168
K+ K ++ ++ C+ I + Y CV N+++K+ E++L +
Sbjct: 476 LKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDCVS--RARNEKEKQECEKLLTPEA 533
Query: 169 RLLNTKGGLSVKRALINNRHSYEAIKLRP--------IKQELVPGLCLFFQGSLEFNDKT 220
+ L L + + E +K P K+ L Q E K
Sbjct: 534 KKLLENQALDCLKNAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKE 593
Query: 221 TKTMRTS-----LLDQIQQDDKSYL------------KIWEKYLIKSAQKSFNEAKEVGV 263
+ + T L ++ ++ K+YL K EK L A+K EAK+
Sbjct: 594 CEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVR 653
Query: 264 LEIESVSKEGGNLRIRFKPALGKNKMEILKKSQFKKGSDLGVLEDL-----DPQNEENLI 318
++ VSK K + + E L + KK + L+ L D + +E L
Sbjct: 654 AYLDCVSKA--------KNEAERKECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLK 705
Query: 319 NLISEQKKQISKNNSQSIMIEDIS 342
+L + +K++ S + ++ +S
Sbjct: 706 DLPKDLQKKVLAKESVRVYLDCVS 729
Score = 25.8 bits (55), Expect = 2.0
Identities = 20/101 (19%), Positives = 34/101 (32%)
Query: 284 LGKNKMEILKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKKQISKNNSQSIMIEDISG 343
LGK + E + + G + Q ++ + KN SI I +
Sbjct: 1717 LGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDD 1776
Query: 344 DDFIIDYDLSIKEGDAFHLNYMGDLNTLKKQYSALDKTKKG 384
DF YD+ I TL +++ + + KG
Sbjct: 1777 IDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKG 1817
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 25.8 bits (55), Expect = 2.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 146 VLPYEYE---NKEDKENSEEILKEDFRLLNTKGGLSVKRALI---NNRHSYEAIKLR 196
+ P +Y+ N E+ E +LK DFR+L T +K I N SYE R
Sbjct: 36 ITPKDYDLTSNALVNESKELLLKHDFRVLET----GIKHGTITALKNHQSYEITTFR 88
>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
Length = 385
Score = 25.4 bits (54), Expect = 2.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 136 KIAGFTYFVCVLPYEYENKEDKENSEEILKE 166
++ T + P++YE + ++ +EE LKE
Sbjct: 140 EVGALTIAIVTKPFKYEGNQKRKRAEEGLKE 170
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 25.4 bits (54), Expect = 2.6
Identities = 39/145 (26%), Positives = 58/145 (39%), Gaps = 32/145 (22%)
Query: 25 DREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAFCSNAFLAAQVLNLNQERQ 84
D+++ L +E F DEKRYL+ KEK+ L +ERQ
Sbjct: 87 DKKEAHLKHLEAQHKEFVRDEKRYLE-------KEKK----------------ELEKERQ 123
Query: 85 VLELKCHFFKHPIKILPEPLNINFKDTIIKKL--LKDMGKDKKIEDFKETCILKIAGFTY 142
+LE + FK I E D ++ + KD K +E +E + +
Sbjct: 124 ILEQERENFKKQRAICKE-AQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSAL-- 180
Query: 143 FVCVLPYEYENKED-KENSEEILKE 166
+ YE E KE+ K+ S IL E
Sbjct: 181 ---IRRYEKEAKEEGKKKSYAILAE 202
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.0 bits (53), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 286 KNKMEILKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKKQ 327
KN E++K+ + + + LED+ Q + N + I E K+
Sbjct: 197 KNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKK 238
>ref|NP_224137.1| putative [Helicobacter pylori J99]
Length = 79
Score = 24.3 bits (51), Expect = 5.8
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 329 SKNNSQSIM-IEDISGDDFII----DYDLSIKEGDAFHLNYMGDLNTLKKQYSALDKTKK 383
S+N + ++ + ++S DFI D+ +AF ++ LK+ +AL+K KK
Sbjct: 15 SQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKK 74
Query: 384 GL 385
GL
Sbjct: 75 GL 76
>ref|NP_223869.1| putative [Helicobacter pylori J99]
Length = 180
Score = 24.3 bits (51), Expect = 5.8
Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 5/57 (8%)
Query: 5 IKEDSIIKAYNLNTAKLEPKDREKLGLLKIE---KNKIYFHLD--EKRYLKLEIIGK 56
+KE ++ + N + PK+ L L IE +N +++H+ E LK ++ K
Sbjct: 74 LKERPLLSVIDFNASSFYPKNDANLSLATIELTYQNPMFWHVGRVENEGLKTLLLSK 130
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 24.3 bits (51), Expect = 5.8
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 250 SAQKSFNEAKEVGVLEIESVS--KEGGNLRIRFKPALGKNKMEILKKSQFKKGSDLGVLE 307
+AQK F++A + L + K G I +L NK ++ K+ L +++
Sbjct: 269 TAQKKFDQASKQASLIYQERKDPKFLGLEAIYHYESLSANKKKLTKEEM------LPIIQ 322
Query: 308 DLDPQNEENLINLISEQKKQISKNNSQSIMIEDISGDDFIIDYDLSIKEG 357
L+ +E L + K+ ++Q + G +IDYD+ +K G
Sbjct: 323 KLEQATKERQAWLAKTKDKE----DAQDAFFYNFLGYS-LIDYDMDVKRG 367
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.3 bits (51), Expect = 5.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 56 KTKEKEIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFK 94
K +K K FCS +++ V + QVL +K H K
Sbjct: 3 KGLKKAFKERFCSQVYISFNVDHNLLSAQVLRVKNHRIK 41
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 23.9 bits (50), Expect = 7.6
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 32 LKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAFCS 68
L+ E K YF EKRYL+ KT + N FC+
Sbjct: 17 LQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFCA 53
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 23.9 bits (50), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 292 LKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKK 326
LKK + KKG + E+ NEE I I +K+
Sbjct: 360 LKKERLKKGFNFNSFENKLYLNEEGRIEKIETEKE 394
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 23.9 bits (50), Expect = 7.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 109 KDTIIKKLLKDMGKDK--KIEDFKETCILKIAGFTYFVCVLPYEYENKED 156
K+ KK+L+ + K K E C KIA C+ P+ Y E+
Sbjct: 175 KNQFCKKILEIIRAQKIDKEPQLTEFCRSKIAPLKIEYCIFPHYYSLSEE 224
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 23.9 bits (50), Expect = 7.6
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 249 KSAQKSFNEAKEVGVLEIESVSKEGGNLR 277
K+ K++ +AK++G+ + ++GG ++
Sbjct: 124 KNVLKAYEKAKDLGMKTLSLAGRDGGKMK 152
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 23.9 bits (50), Expect = 7.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 144 VCVLPYEYENKEDKENSEEILKEDFRLL--NTKGGLSVK 180
VCV P +KED+ N+E +L E RL NT ++K
Sbjct: 140 VCV-PTSARSKEDRLNTELLLDEIVRLYSQNTTNNENIK 177
>ref|NP_223327.1| putative [Helicobacter pylori J99]
Length = 171
Score = 23.9 bits (50), Expect = 7.6
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 244 EKYLIKSAQKSFNEAKEVGVLEIESVSKEGGNL----RIRF-------KPALGKNKMEIL 292
E+ +I A F + +EV + +E++ ++ GNL + F P L N +
Sbjct: 91 ERDIITQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMF 150
Query: 293 KKSQFKKGSDLGVLEDLDPQNEEN 316
K+ F + + E+ D +EEN
Sbjct: 151 KQPPFNENN----FENFDNSDEEN 170
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 23.9 bits (50), Expect = 7.6
Identities = 15/66 (22%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Query: 285 GKNKMEILKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKKQISKNNSQSIMIEDISGD 344
GK+ ++L + ++G D+ L + ++ N I + +++ KNN+ + +E SG
Sbjct: 384 GKSAKDVLDRLLEEQGGDVDTLIEQMGLSQVNDTEAIVKVIEEVLKNNADKV-LEYKSGK 442
Query: 345 DFIIDY 350
D + +
Sbjct: 443 DKLFGF 448
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 23.9 bits (50), Expect = 7.6
Identities = 15/57 (26%), Positives = 32/57 (55%), Gaps = 5/57 (8%)
Query: 221 TKTMRTSLLDQIQQDDKSYLK-----IWEKYLIKSAQKSFNEAKEVGVLEIESVSKE 272
+K MR + ++++ K L+ + K I +A++SFN+A + GV ++ +K+
Sbjct: 152 SKIMRLDGVKHVEKNLKDNLEEMSDEVKNKGSIDNAKESFNKATDKGVEALKEKAKD 208
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 23.5 bits (49), Expect = 9.9
Identities = 29/101 (28%), Positives = 43/101 (41%), Gaps = 19/101 (18%)
Query: 217 NDKTTKTMRTSLLDQIQQDDKSYLKIWEKYLIKSAQKSF-NEAKEVGVLEIESVSKEGGN 275
N K T + + Q ++ LK EK K Q ++ +A E VLE+ K N
Sbjct: 265 NKKFTLSKKKKQKSQFLYLEEENLK--EKIAFKENQINYVRDAAEESVLEMFMPVK---N 319
Query: 276 LRIR-------------FKPALGKNKMEILKKSQFKKGSDL 303
+I+ FK LGKN+ E +K Q + +DL
Sbjct: 320 SKIKRPMNGYEVLYYKDFKIGLGKNQKENIKLLQDARANDL 360
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 23.5 bits (49), Expect = 9.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 19 AKLEPKDREKLGLLKIEKNKIYFHLDEKRYLKLEIIGKTKEKEIKNAF 66
AKL K + LGL IEK K L + K TK+K+ KN F
Sbjct: 425 AKLN-KGLQDLGLGLIEKEKTTIPLTPTKRFKCYYASNTKDKK-KNLF 470
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 23.5 bits (49), Expect = 9.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 161 EEILKEDFRLLNTKGGLSVKRALINNRHSYEAIKLRPIKQELVPG 205
EE KE FRLL G L N S +KL +++L+ G
Sbjct: 37 EEFQKEYFRLLKDFVGRPSPLTLCQNIVSNPKVKLYLKREDLIHG 81
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 23.5 bits (49), Expect = 9.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 265 EIESVSKEGGNLRIRFKPALGKNKMEIL 292
++ES +K GG + +F AL K+ +EIL
Sbjct: 52 KVESQTKAGGIGKQQFLDALEKSLLEIL 79
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 23.5 bits (49), Expect = 9.9
Identities = 22/89 (24%), Positives = 42/89 (46%), Gaps = 11/89 (12%)
Query: 249 KSAQKSFNEAKEVGVLEIESVSKEGGNLR---IRFKPALGKNKMEILKKSQFKKGSDLGV 305
++ Q+ FN+ + + +E LR I+ AL K+KM KS+ +K +
Sbjct: 574 RAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMP---KSEREK-----I 625
Query: 306 LEDLDPQNEENLINLISEQKKQISKNNSQ 334
+++LD + E NL E+ ++ +Q
Sbjct: 626 IKELDKKMRERAKNLDFEEAMRLRDEIAQ 654
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 9.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 302 DLGVLEDLDPQNEENLINLISEQKKQISKNNSQS---IMIEDISGDDFII 348
D+G + ++ + N+ L++E + SKN+ + I+D S D II
Sbjct: 655 DVGAMMEMAKSIKVNITTLMNESENTKSKNSPSDYVVLAIDDSSTDRAII 704
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 23.5 bits (49), Expect = 9.9
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 52 EIIGKTKEKEIKNAFCSNAFLAAQVLNLNQERQVLELKCHFFKHPIKILPEPLNINFKDT 111
EI+G E E N N + Q+LE+ F+H IK + +
Sbjct: 389 EILGLVIEAEKIQNILKNLGFKVSTKEPNSKPQILEVIVPNFRHDIKTIQD--------- 439
Query: 112 IIKKLLKDMGKDKKI 126
I +++L+ +G D +
Sbjct: 440 IAEEILRFVGIDNLV 454
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.5 bits (49), Expect = 9.9
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 221 TKTMRTSLLDQIQQDDKSYLKIWEKYLIKSAQKSFNE 257
TKT L+ I Q +S+L+ Y +++++ ++NE
Sbjct: 64 TKTASPVLIKNIGQMKRSHLENALNYALENSETAYNE 100
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 23.5 bits (49), Expect = 9.9
Identities = 12/45 (26%), Positives = 25/45 (54%)
Query: 155 EDKENSEEILKEDFRLLNTKGGLSVKRALINNRHSYEAIKLRPIK 199
E+ ++ + K +++N + K AL + HS++A+ +PIK
Sbjct: 332 EENTHAYSLEKVPKKIINARIKALNKIALKHQNHSFKALLNKPIK 376
>ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99]
Length = 255
Score = 23.5 bits (49), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 82 ERQVLELKCHFFKHPIKILPE 102
E ++LE H++ P++ILPE
Sbjct: 155 EGELLETCMHYYFTPLEILPE 175
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 23.5 bits (49), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 34 IEKNKIYFHLDEKRYLKLEIIGK 56
+EKNK+ H ++ YL E++ K
Sbjct: 450 LEKNKLVIHSNDALYLAKEMLPK 472
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.5 bits (49), Expect = 9.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 284 LGKNKMEILKKSQFKKGSDLGVLEDLDPQNEENLINLISEQKKQISKNN 332
+ K E++KK K L VL + + + L + + ++ KQ K N
Sbjct: 49 IAKKVRELVKKHPKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKEN 97
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,325
Number of Sequences: 1491
Number of extensions: 25042
Number of successful extensions: 133
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 46
length of query: 389
length of database: 494,079
effective HSP length: 79
effective length of query: 310
effective length of database: 376,290
effective search space: 116649900
effective search space used: 116649900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)