BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645063|ref|NP_207233.1| hypothetical protein
[Helicobacter pylori 26695]
(191 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 30 0.032
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 30 0.054
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 29 0.071
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 29 0.071
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 29 0.092
ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PR... 28 0.12
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 28 0.12
ref|NP_223371.1| putative abc transporter, ATP-binding prot... 28 0.16
ref|NP_223400.1| putative [Helicobacter pylori J99] 28 0.21
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 27 0.35
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 27 0.35
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 27 0.46
ref|NP_223192.1| cag island protein, DNA transfer protein [... 27 0.46
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 27 0.46
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 26 0.60
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 26 0.60
ref|NP_223617.1| putative [Helicobacter pylori J99] 26 0.78
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 1.0
ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99] 25 1.0
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 25 1.0
ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicoba... 25 1.0
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 25 1.0
ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pyl... 25 1.0
ref|NP_223403.1| putative abc transporter, ATP-binding prot... 25 1.3
ref|NP_223886.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223531.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 25 1.7
ref|NP_223117.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pyl... 24 2.3
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 24 2.3
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 24 3.0
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 24 3.0
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 24 3.0
ref|NP_223055.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 24 3.0
ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter py... 24 3.0
ref|NP_222733.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 23 3.9
ref|NP_223773.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223446.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223372.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 5.1
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 23 5.1
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 23 5.1
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 5.1
ref|NP_223020.1| putative abc transporter, ATP-binding prot... 23 5.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 6.6
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 23 6.6
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 23 6.6
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 6.6
ref|NP_223016.1| putative [Helicobacter pylori J99] 23 6.6
ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter py... 23 6.6
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 22 8.6
ref|NP_223783.1| putative [Helicobacter pylori J99] 22 8.6
ref|NP_223534.1| putative [Helicobacter pylori J99] 22 8.6
ref|NP_223399.1| putative [Helicobacter pylori J99] 22 8.6
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 30.4 bits (67), Expect = 0.032
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 9 LSSYQKRALKLTKRVRKKIFKNDPTENQKKAIK-----IALNTPDIAIIQGPPGTGKTTV 63
L S +K + LT++ + K DP + + I + T + I+ G PG GKT V
Sbjct: 156 LESLEKFGIDLTQKALEN--KLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAV 213
Query: 64 INAICERLF-EEYPK 77
+ + +R+ +E PK
Sbjct: 214 VEGLAQRIVNKEVPK 228
Score = 27.7 bits (60), Expect = 0.21
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 23/91 (25%)
Query: 5 LKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIK-----IALNTPDIA--------- 50
++++L S + R L + ++K++ Q+KA+K I N ++
Sbjct: 548 VQKMLQSEKNRVLNIESELQKRVV------GQEKALKAIAKAIKRNKAGLSDSNKPIGSF 601
Query: 51 IIQGPPGTGKTTVINAICERLFEEYPKDKNI 81
+ GP G GKT A+ + LF+ DKN+
Sbjct: 602 LFLGPTGVGKTESAKALAQFLFD---SDKNL 629
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 29.6 bits (65), Expect = 0.054
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
D +N KK + + P ++ GPPG GKT + A+
Sbjct: 179 DYLKNPKKYQDLGIFLPKGVLLVGPPGVGKTMIAKAL 215
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 29.3 bits (64), Expect = 0.071
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 10/77 (12%)
Query: 5 LKEILSS--YQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTT 62
L+EIL S +QK + LT + K I N + KK + +I G G+GK+
Sbjct: 492 LREILESELFQKSSSPLTLALGKDIVGNPFITDLKKLPHL--------LIAGTTGSGKSV 543
Query: 63 VINAICERLFEEYPKDK 79
+NA+ L + P D+
Sbjct: 544 GVNAMILSLLYKNPPDQ 560
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 29.3 bits (64), Expect = 0.071
Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 6/58 (10%)
Query: 130 NERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEFLKEIEKN 187
N+ +F E + +++ L GD+EN EK+L+ L R+YS E LKE ++N
Sbjct: 372 NKNYHKFYEPFGKVLKEGLY--GDFENKEKLLE----LLRFYSKDKGEWISLKEYKEN 423
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 28.9 bits (63), Expect = 0.092
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 6 KEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVIN 65
KE + Y L R +KK K D T+ I GPPG GKT++ N
Sbjct: 331 KERIVEYFATMQLLEMRHKKKPEKKDKTKGT------------ILCFYGPPGVGKTSLAN 378
Query: 66 AICERL 71
+I + +
Sbjct: 379 SIAKAI 384
>ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PROTEIN [Helicobacter
pylori J99]
Length = 248
Score = 28.5 bits (62), Expect = 0.12
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 40 IKIALNTPDIAIIQGPPGTGKTTVINAI 67
I LN ++A+I GP G GK+T + +
Sbjct: 23 INFTLNKGEVAVILGPSGCGKSTFLKCL 50
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 28.5 bits (62), Expect = 0.12
Identities = 17/74 (22%), Positives = 36/74 (47%)
Query: 112 FGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYY 171
+ K+ EE+ + E+ E +F E + L+ D+EN++K L+ ++++ Y
Sbjct: 24 YACKEQQGEEKQEASEKEGEIKEDFELKYQEMREQYLRVHADFENVKKRLERDKSMALEY 83
Query: 172 SSPISELEFLKEIE 185
+ L+ L I+
Sbjct: 84 AYEKIALDLLPVID 97
>ref|NP_223371.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 240
Score = 28.1 bits (61), Expect = 0.16
Identities = 30/131 (22%), Positives = 50/131 (37%), Gaps = 28/131 (21%)
Query: 15 RALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERL--- 71
+A L K+++K +D + + + + ++ + GP G GKTT IC L
Sbjct: 5 KAEHLNKQIKKTKIVSD--------VSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPS 56
Query: 72 ----------FEEYPKDKNIKGQILLCAQGHDATN--NARERIKVGGLPTFKFGAKKNAK 119
+YP K I Q + E + + G TF KN+K
Sbjct: 57 GGSVYLNDVDLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTF-----KNSK 111
Query: 120 EEQYKQDERLN 130
E + K + L+
Sbjct: 112 ESEEKMESLLD 122
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 27.7 bits (60), Expect = 0.21
Identities = 14/43 (32%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Query: 128 RLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRY 170
R ++LR F L++ + + L+K+ D EN++++LD E+ L +
Sbjct: 283 RSEQKLR-FKVPLLKDMLEYLKKVFDKENLDEVLDEEKILHAF 324
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 26.9 bits (58), Expect = 0.35
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 22 RVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNI 81
R + FKN P KK + + I G G K+ +I+ I + + YP D NI
Sbjct: 217 RTISRAFKNYPQTIFKKDLYLLE-----IIALGKLGIKKSLLID-IGTQWIKNYPTDPNI 270
Query: 82 KGQILLCAQGHDATNNARERIK 103
+ A+ D NN ++ ++
Sbjct: 271 PEALYYVAKALDENNNYKQAVR 292
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 26.9 bits (58), Expect = 0.35
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 5/88 (5%)
Query: 71 LFEEYPKDKNIKGQILLCAQGHDA--TNNARERIKVGGLPTFKFGAKKNAKEEQYKQDER 128
+ E+Y D LCA G D + E K F + K+E +K ER
Sbjct: 545 MIEKYGADSLRFTLANLCATGRDIKLSTTHLENNKNFANKLFNAASYLKLKQESFKDKER 604
Query: 129 LNE---RLREFAETLIESVRKKLQKLGD 153
LNE L +A++ + V K+++ D
Sbjct: 605 LNEYQTALGRYAKSRLNLVTKEVRNALD 632
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 26.6 bits (57), Expect = 0.46
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 116 KNAKEEQYKQD-ERLNERL-REFAETLIESVRKKLQKLGDYENIEKILDLEEALRRY 170
KNAK +Y + L ++L + T +++ +KL++ IEK+L EE L RY
Sbjct: 107 KNAKSGRYTEGGSTLTQQLVKNMVLTREKTLTRKLKEAIISIRIEKVLSKEEILERY 163
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 26.6 bits (57), Expect = 0.46
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Query: 31 DPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNI 81
D E AIK + I+ G G+GKTT I +I E + PK++ I
Sbjct: 155 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI----PKEERI 201
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 26.6 bits (57), Expect = 0.46
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 47 PDIAIIQGPPGTGKTTVINAI 67
P ++ GPPGTGKT + A+
Sbjct: 203 PKGVLLVGPPGTGKTLLAKAV 223
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 26.2 bits (56), Expect = 0.60
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 43 ALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCA 89
A P + ++ G G+GKTT + Y K KN K +LLCA
Sbjct: 90 AQTPPTVVLMAGLQGSGKTTTTAKLA-----HYLKTKNKK--VLLCA 129
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 26.2 bits (56), Expect = 0.60
Identities = 15/47 (31%), Positives = 28/47 (58%), Gaps = 1/47 (2%)
Query: 121 EQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEAL 167
E++ + ++L + + + E L + +K++K+ E IEKI EEAL
Sbjct: 486 ERFFKAKKLQDMVLQDTEPLFSKI-EKIEKIEKIEKIEKIEKGEEAL 531
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.8 bits (55), Expect = 0.78
Identities = 34/159 (21%), Positives = 59/159 (36%), Gaps = 19/159 (11%)
Query: 30 NDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCA 89
NDP ++++ K L D+ I P G T + LF+ + ++ + +
Sbjct: 263 NDPIASREERTKALLKDCDVVFIVSPSGQFLTDSDMS----LFDRVSHKEGLQEIYFVAS 318
Query: 90 QGHDATNNARERIKVG-GLPTFKFGAKKN----------AKEEQYKQDERLNERLREFAE 138
Q A + E K LPT A+K+ A E+Y + E+ ++
Sbjct: 319 QADSAVGSMSEVEKSNHHLPTAFENAQKSLSSQLNNIMGALIEKYPNQREVFEKAKQNGV 378
Query: 139 TLIE----SVRKKLQKLGDYENIEKILDLEEALRRYYSS 173
L S+ K + +E +K + ALR S
Sbjct: 379 ILTSGVCFSMHKDFENQASWERNQKTEEYHNALRNLRDS 417
Score = 25.4 bits (54), Expect = 1.0
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 69 ERLFEEYPKDKN--IKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQD 126
E E+Y ++ N ++ ++ + +N A+E I+ G N + K D
Sbjct: 118 ENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVG----------NKMLGRNKSD 167
Query: 127 ERLNERLREFAETLIESVRKKLQKLGDYENIEK 159
E + +R A+ +E K + YE I+K
Sbjct: 168 EEIEKRAERIAKNELEKDTKLVSSHDQYEKIKK 200
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 25.4 bits (54), Expect = 1.0
Identities = 19/81 (23%), Positives = 36/81 (43%), Gaps = 6/81 (7%)
Query: 116 KNAKEEQYKQDERLNERLREFAETLI------ESVRKKLQKLGDYENIEKILDLEEALRR 169
K++ E + +++ ++R F E ES+ L+ L EN K ++ E L+R
Sbjct: 262 KSSDENGERDGDKILRKIRSFLERKQLPLEKRESIISSLEPLLKNENNNKAINGESRLKR 321
Query: 170 YYSSPISELEFLKEIEKNESF 190
+S + L +I + F
Sbjct: 322 CFSEIVDNLGVYYKIGLSTDF 342
>ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99]
Length = 166
Score = 25.4 bits (54), Expect = 1.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 23 VRKKIFKNDPTENQKKAIKIALNTPDIAIIQG 54
++K FK + + + KA+K+ PD+ ++ G
Sbjct: 1 MQKVTFKEETYQLEGKALKVGDKAPDVKLVNG 32
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 25.4 bits (54), Expect = 1.0
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 60 KTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAK 119
K +I +FE+ K ++KG+I AQG + E + V G P+ N
Sbjct: 288 KRKIIGETFIEVFEKEAKKHHLKGKIEFLAQG-TLYPDVIESVSVKG-PSKVIKTHHNVG 345
Query: 120 EEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELE 179
D +L E LRE + + + K+L D+ +R + P +
Sbjct: 346 GLPEWMDFKLIEPLRELFKDEVRLLGKELGVSQDF-----------LMRHPFPGPGLAIR 394
Query: 180 FLKEIEKNE 188
L EI +N+
Sbjct: 395 ILGEINENK 403
>ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicobacter pylori J99]
Length = 438
Score = 25.4 bits (54), Expect = 1.0
Identities = 14/54 (25%), Positives = 28/54 (50%), Gaps = 3/54 (5%)
Query: 50 AIIQGPPGTGKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIK 103
A+I PP TGKT ++ + + + +P+ + I ILL + + + + +K
Sbjct: 193 ALIVAPPRTGKTELMKELAQGITSNHPEVELI---ILLVDERPEEVTDMQRSVK 243
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/91 (18%), Positives = 44/91 (47%), Gaps = 7/91 (7%)
Query: 1 MDEVLKEILSSYQKRALKLTKRV------RKKIFKNDPTENQKKAIKIA-LNTPDIAIIQ 53
+++ KE+L++ +K ++ K V +++ K T+++ + + + ++
Sbjct: 36 LNQTQKEVLNALKKPLPQVQKSVSIAEIEHEEVIKFSSTQSELDIVLGGGIAKGGLYLVG 95
Query: 54 GPPGTGKTTVINAICERLFEEYPKDKNIKGQ 84
G PG GK+T++ + L + K + G+
Sbjct: 96 GSPGVGKSTLLLKVASGLAKNQQKVLYVSGE 126
>ref|NP_222785.1| UREASE ACCESSORY PROTEIN [Helicobacter pylori J99]
Length = 199
Score = 25.4 bits (54), Expect = 1.0
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 54 GPPGTGKTTVINAICERLFEEY 75
GP G+GKT +I A+ + ++Y
Sbjct: 8 GPVGSGKTALIEALTRHMSKDY 29
>ref|NP_223403.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 223
Score = 25.0 bits (53), Expect = 1.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 38 KAIKIALNTPDIAIIQGPPGTGKTTVINA 66
K + + D I GP G+GK+T++ +
Sbjct: 22 KHANLRIKRKDFVFISGPSGSGKSTLLRS 50
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 6 KEILSSYQKRALKLTKRVRKKIFK 29
KEI+ +Y K AL+L + K++F+
Sbjct: 287 KEIVENYAKNALRLKEAGYKRVFE 310
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 24.6 bits (52), Expect = 1.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 107 LPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKKLQK 150
LPT K ++E+QYK+ NE+ +E L++ + LQK
Sbjct: 3 LPTPK---SLRSREKQYKKLGLTNEQAKERTNELLKEIPNILQK 43
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 24.6 bits (52), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 37 KKAIKIALNTPDIAIIQGPPGTGKTTVINAICERLFEEYPK 77
K +K P + +I G G GKTT I + + +++ K
Sbjct: 76 KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 24.6 bits (52), Expect = 1.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 50 AIIQGPPGTGKTTVINAICERL 71
A GPPG GKT++ I L
Sbjct: 40 AFFYGPPGVGKTSLAQIIARSL 61
>ref|NP_223278.1| ASPARTYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 579
Score = 24.3 bits (51), Expect = 2.3
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 60 KTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGL--PTFKFGAKKN 117
K+ ++ +C+ + Y K ++ + +L A+G + R++ GL P K G +
Sbjct: 41 KSGLVQLVCDPSSKAYEKALEVRSEFVLVAKG-------KARLRGAGLENPKLKTGKIEI 93
Query: 118 AKEEQYKQDERLNERLREFAETLIESVRKK-----LQKLGDYE 155
EE +++ + +++ E +R K L+ L YE
Sbjct: 94 VLEELVIENKSATPPIEIGNKSVNEDLRLKYRYLDLRSLNAYE 136
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 24.3 bits (51), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 48 DIAIIQGPPGTGKTTVINAICERL 71
D + GPPG GKT++ + I + +
Sbjct: 54 DHMLFFGPPGLGKTSISHIIAKEM 77
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 23.9 bits (50), Expect = 3.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 51 IIQGPPGTGKTTVINAICERLFEEYPK 77
+ G G GKT ++NAI E++ K
Sbjct: 147 LFYGGTGLGKTHILNAIGNHALEKHKK 173
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 23.9 bits (50), Expect = 3.0
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 13/54 (24%)
Query: 20 TKRVRKKIFKND--------PTENQKKAIKIALNTPDIAIIQGPPGTGKTTVIN 65
TK +K+I +N+ P N +K T +I GP GK TV+N
Sbjct: 344 TKNDKKEISQNNNSNTEVINPPNNTQKT-----ETEPTQVIDGPFAGGKDTVVN 392
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 23.9 bits (50), Expect = 3.0
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 22/107 (20%)
Query: 59 GKTTVINAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNA 118
G +I+ I F+ P DK ++ L + H N K+ KN
Sbjct: 502 GAKDIIHTI-SHTFKLLPSDKRLQWVQKLRDESHRYAINFHRSTKL-----------KNM 549
Query: 119 KEEQYKQDERLNERLREFAETLIESVRKKLQKLGDYENIEKILDLEE 165
K+ +++ + E SV+K L G +E IEK D E+
Sbjct: 550 KQIALLKEKGIGEA----------SVKKLLDYFGSFEAIEKASDQEK 586
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 23.9 bits (50), Expect = 3.0
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 20/140 (14%)
Query: 55 PPGTGKTTVINAICERLFEEYPKDKN---IKGQILLCAQGHDATNNARERIKVGGLPTFK 111
P + V + I E L E Y KDKN ++ +++ ++ + +ER+
Sbjct: 557 PKDESNSAVGSLIHELLKEAYEKDKNPHALEERLIWLSETRENV-TPKERLDT------- 608
Query: 112 FGAKKNAKEEQYKQDERLNER-----LREFAETLIESVRKKLQKLGDYENIEKILDLEEA 166
A K + K+ ER N L + ET+I+ V K G + I+K D E
Sbjct: 609 LVALKKIQAFYKKERERFNAEITILDLEKSFETIIQGVIFK----GRIDRIDKTADNEII 664
Query: 167 LRRYYSSPISELEFLKEIEK 186
L Y +L+ + E ++
Sbjct: 665 LLDYKFKSDLKLDSMSEKQR 684
Score = 22.3 bits (46), Expect = 8.6
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 131 ERLREFAETLIESVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELEF 180
E+ E E + + KKL++LG Y +KI+ + + + + S +E+
Sbjct: 127 EKHLEVLEMIYDRYVKKLEELGFY---DKIMQKKPTILKEFFEHFSSIEW 173
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 23.9 bits (50), Expect = 3.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 45 NTPDIAIIQGPPGTGKTTVINAICERL 71
N ++ I+ GP G GK+T+ + E++
Sbjct: 3 NDFNLLILSGPSGAGKSTLTKYLQEKI 29
>ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter pylori J99]
Length = 306
Score = 23.9 bits (50), Expect = 3.0
Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 1/85 (1%)
Query: 65 NAICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYK 124
+A C L E+ K N QI + + + + R V GLP K K + ++ K
Sbjct: 221 SAFCCHLEREFIKGLNGGCQIPIGVHANLMGDEVKIRA-VLGLPNGKEVIAKEKQGDKTK 279
Query: 125 QDERLNERLREFAETLIESVRKKLQ 149
+ + E L EF ++ + + +K Q
Sbjct: 280 AFDLVQELLEEFLQSGAKEILEKAQ 304
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 23.9 bits (50), Expect = 3.0
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 127 ERLNERLREFAETLIESVRKKLQKLGDYENIEKILD-----------LEEALRRYYSSPI 175
E L +R + + + VRK ++++G+ + ILD L+E L R S+ +
Sbjct: 115 EVLGQRPKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLRPMSAKL 174
Query: 176 SELEFLKE 183
E F+++
Sbjct: 175 LEPTFMEK 182
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Query: 25 KKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVINAI 67
+KI++N + K + + L DI + G G GK+T+I I
Sbjct: 9 EKIYENG--FHALKGVNLELKKGDILGVIGYSGAGKSTLIRLI 49
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.5 bits (49), Expect = 3.9
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 107 LPTFKFGAKKNAKEEQYKQDERLNERLR------------EFAETLIESVRKKLQKLGDY 154
L F+ KNA++++ K ++ RLR E + L +++ + QKL
Sbjct: 97 LNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESV 156
Query: 155 ENIEKILDLE 164
+N K LDL+
Sbjct: 157 KN--KTLDLQ 164
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 23.5 bits (49), Expect = 3.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 51 IIQGPPGTGKTTVIN 65
I++G PG GK+ +IN
Sbjct: 225 ILEGSPGCGKSMIIN 239
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.5 bits (49), Expect = 3.9
Identities = 19/72 (26%), Positives = 31/72 (42%), Gaps = 18/72 (25%)
Query: 26 KIFKNDPTENQKKAIKIALNTPDIA---------------IIQGPPGTGKTTVINAICER 70
++ KN+PT + I ++TP IA I+QG ++ N CE+
Sbjct: 135 ELAKNNPTTT---CLGIEIHTPSIAQALKQIELLDLKNLHILQGDGRLVLESMPNHRCEK 191
Query: 71 LFEEYPKDKNIK 82
+F +P N K
Sbjct: 192 IFVHFPVPWNEK 203
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 23.5 bits (49), Expect = 3.9
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 49 IAIIQGPPGTGKTTVINAICERL 71
+ +++G G+GKTT++ A + L
Sbjct: 23 VVLLKGVVGSGKTTLVQACLKHL 45
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.1 bits (48), Expect = 5.1
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 56 PGTGKTTVINAICERLFEEYPK 77
PG T+I ++C ++ +E+ K
Sbjct: 543 PGFNPKTLIESVCSKVLKEFEK 564
Score = 23.1 bits (48), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 5 LKEILSSYQKRALKLTKRVRK 25
L EI+SSY L+L K V++
Sbjct: 779 LNEIISSYSNSLLELDKEVKE 799
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 49 IAIIQGPPGTGKTTVINAICERLFEEYPKDKNI 81
IA+I GP G GK+T +C+ L EE D +
Sbjct: 350 IALI-GPNGVGKST----LCKILVEELKPDTGV 377
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 23.1 bits (48), Expect = 5.1
Identities = 12/43 (27%), Positives = 19/43 (43%)
Query: 21 KRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTV 63
K + KI EN K I + + + G G+GK+T+
Sbjct: 4 KTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTL 46
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 5.1
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 49 IAIIQGPPGTGKTTVINAICER 70
I ++ GP G GKTT + + R
Sbjct: 254 ILMLVGPTGVGKTTTLAKLAAR 275
>ref|NP_223020.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 233
Score = 23.1 bits (48), Expect = 5.1
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 7/38 (18%)
Query: 37 KKAIKIALNTPDIAI-------IQGPPGTGKTTVINAI 67
K K ALN D + I G G GK+T+IN I
Sbjct: 10 KTMFKNALNIQDFSFKNHTSTAIIGTNGAGKSTLINTI 47
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.7 bits (47), Expect = 6.6
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 121 EQYKQDERLNERLREFAETLIE-SVRKKLQKLGDYENIEKILDLEEALRRYYSSPISELE 179
+ K+ + ++++E+ + + + L L + I KI DL+ P ++ E
Sbjct: 663 DDLKKIPNIKKKIQEYKDLVAQYKDPNPLYPLNKADLINKIQDLKNTFSLTLKDPKTKAE 722
Query: 180 FLKEIEKN 187
K IEK+
Sbjct: 723 LEKTIEKH 730
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/47 (27%), Positives = 24/47 (50%)
Query: 5 LKEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAI 51
LK++ ++YQ+ ++ K + + P+ N K + ALN AI
Sbjct: 27 LKQLDNTYQETNQQVLKNLDEIFSTTSPSANNKIGQEDALNIKKAAI 73
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 22.7 bits (47), Expect = 6.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 124 KQDERLNERLREFAETLIESVRKKLQKLGDYE-----NIEKILDLEEALRRYY 171
K+ E N L + T+ S + L Y N+E + LEE ++ YY
Sbjct: 368 KEKENYNGLLVDKETTIKRSYKGTLISENSYSKKTPINLEDLRSLEEEIKSYY 420
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 6.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 23 VRKKIFKNDPTENQKKAIKIALNT 46
++++I N PT+N K+ K LNT
Sbjct: 57 IKEQIQANQPTKNPKQDNKDDLNT 80
>ref|NP_223016.1| putative [Helicobacter pylori J99]
Length = 122
Score = 22.7 bits (47), Expect = 6.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 YPKDKNIKGQILLCAQGHDATNNARERIKVGGL 107
Y D+N++G + + +A R R+K GL
Sbjct: 21 YRSDENLRGSNAVISANENARERKRARLKRVGL 53
>ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter pylori J99]
Length = 89
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 11 SYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQ 53
S +KR + KR + F +N KA++ A+ D+A Q
Sbjct: 6 SAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDVAKAQ 48
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 22.3 bits (46), Expect = 8.6
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 17/83 (20%)
Query: 5 LKEILSSY---QKRALKLT--------KRV--RKKIFKNDPTENQ---KKAIKIALNTPD 48
LK +L +Y Q++A K+ KR+ ++K+ K D ++ + ++ L+ +
Sbjct: 91 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVELSKSN 150
Query: 49 IAIIQGPPGTGKTTVINAICERL 71
I +I GP G+GKT + + + L
Sbjct: 151 ILLI-GPTGSGKTLMAQTLAKHL 172
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 22.3 bits (46), Expect = 8.6
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 6 KEILSSYQKRALKLTKRVRKKIFKNDPTENQKKAIKIALNTPDIAIIQGPPGTGKTTVIN 65
KE+L SYQ +L+K V+K N + + ++ + A+++ +G V+
Sbjct: 138 KELLESYQMTQEELSKIVKK---SRAHVANIMRLLTLSSKVQN-ALLEEKITSGHAKVLV 193
Query: 66 AICERLFEEYPKDKNIKGQILLCAQGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQ 125
+ E E +I GQ L Q D + FK A + K+ +KQ
Sbjct: 194 GLEEEKQELIL--NSIIGQKLSVRQTEDLARD------------FKINANFDNKKHGFKQ 239
Query: 126 DERL--NERLREFAETLIESVRKK 147
+ L + L F ++L + + K
Sbjct: 240 TQTLIAEDELERFNQSLWDRYKLK 263
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/58 (17%), Positives = 29/58 (49%)
Query: 90 QGHDATNNARERIKVGGLPTFKFGAKKNAKEEQYKQDERLNERLREFAETLIESVRKK 147
+ + NA++++ G+ + K A+ + K ++ + E+L+ E + S+ ++
Sbjct: 454 ENQEELKNAKQKLNALGVKSKKIIAQHQSLNHLVKNNQVIMEKLKNATEEIKRSLMQQ 511
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 22.3 bits (46), Expect = 8.6
Identities = 26/106 (24%), Positives = 45/106 (41%), Gaps = 25/106 (23%)
Query: 51 IIQGPPGTGKTTVINAICERLFEEYPKDKNI-----------KGQILLCAQG------HD 93
++ G G GK+++INA+ + + K I KG IL +G HD
Sbjct: 49 LLMGATGVGKSSLINALFGKEITKTGVGKPITQHLEKYIDEEKGLILWDTKGIEDKDYHD 108
Query: 94 ATNNARERIKVGGLPTFKFGAKKNAKEEQY----KQDERLNERLRE 135
+ ++ ++ +FK +K A + Y + R+ ER RE
Sbjct: 109 TMQSIKKEME----DSFKTLDEKEAIDVAYLCVKETSSRVQERERE 150
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,649
Number of Sequences: 1491
Number of extensions: 10080
Number of successful extensions: 99
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 63
length of query: 191
length of database: 494,079
effective HSP length: 73
effective length of query: 118
effective length of database: 385,236
effective search space: 45457848
effective search space used: 45457848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)